Rh2AG115100

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000495
Physical Location & Seq
Forward (+)
10304892 .. 10306825
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG115100.1

Sequence Viewer

Length: 825 bp
ATGATGACACCATCTTCAATTTTCCACAACGACTCAGAAAAGCACAATAATGCGGAGGCGGTACAGCAGTACCTTATCTTCAAGAAGAAACTTAGCCAAGCCAACCACCATTTTGAAGAAAATGGTCAAGGAAAACCGCGTTCCACATCGACTATATATACACCATTAAATCTCACACATAGTACTATACCATCAAAAGCCTCCATGAAAATGAAGCTACATAACTTTATCATCGTCTCCCTCACTTTGTTGCTAGGTATCTCCGCAGAACAATGCGGTAGACAAGCCGGTGGAGCTACCTGCCCGAATGGGCTATGTTGTAGCGAGTTTGGCTGGTGTGGCAGCACAGCCGATTACTGTACTAAAAACTGCCAAAGCCAATGTAGTTCAGGCGGTGGCTCAACCCCTTCTCCGACTCCAAGTGGCGGCGGCGGCGATGTTGCCGGCCTCGTTAGCTCCTCTCTCTTTGATCAAATGCTCAAGTATCGCAACGATGCACGGTGCAAGGGCAACGGTTTCTACAAGTATGATGCTTTCATTGCTGCTGCTCGATCATTCGCTGGGTTTGGCACCACTGGAGATGATGCAACGCGCAAGAAGGAGCTCGCTGCTTTCTTAGCTCAAACCTCTCATGAGACCACTGGTGGATGGCCAAGTGCACCAGATGGTCCTTATGCATGGGGTTATTGCTTTGTCAATGAAAACAACCAGGATGTGCATTGTACATCCCCAGAATATCCATGTGCTCCTGGCAAGAAATACTATGGTCGAGGACCCATTCAACTCACCCAGTATGTCTCTTTTCATCCATTATATTCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

274

Amino Acids

29.57

Weight (kDa)

7.94

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chitin_bind_1 PF00187 91 - 128 1.8e-14 Chitin recognition protein
Glyco_hydro_19 PF00182 150 - 268 1.8e-54 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 308
AccB1I GGYRCC 1 cut(s) 569
AccI GTMKAC 1 cut(s) 280
AccII CGCG 2 cut(s) 139, 592
AciI CCGC 9 cut(s) 53, 59, 137, 264, 276, 393, 426, 429, 432
AcoI YGGCCR 1 cut(s) 650
AfaI GTAC 5 cut(s) 63, 71, 184, 361, 724
AfiI CCNNNNNNNGG 1 cut(s) 425
AgsI TTSAA 4 cut(s) 18, 82, 116, 782
AjnI CCWGG 2 cut(s) 708, 748
AluBI AGCT 5 cut(s) 217, 296, 456, 604, 620
AluI AGCT 5 cut(s) 217, 296, 456, 604, 620
Alw21I GWGCWC 3 cut(s) 606, 661, 748
Alw26I GTCTC 3 cut(s) 241, 629, 802
Alw44I GTGCAC 1 cut(s) 657
AoxI GGCC 2 cut(s) 445, 650
ApaLI GTGCAC 1 cut(s) 657
ApeKI GCWGC 4 cut(s) 342, 542, 545, 608
AspLEI GCGC 1 cut(s) 594
AspS9I GGNCC 2 cut(s) 668, 773
AsuHPI GGTGA 1 cut(s) 778
AvaII GGWCC 2 cut(s) 668, 773
BaeGI GKGCMC 1 cut(s) 661
BaeI ACNNNNGTAYC 4 cut(s) 53, 53, 86, 86
BalI TGGCCA 1 cut(s) 652
BanI GGYRCC 1 cut(s) 569
BanII GRGCYC 1 cut(s) 606
BarI GAAGNNNNNNTAC 2 cut(s) 62, 94
Bbv12I GWGCWC 3 cut(s) 606, 661, 748
BbvI GCAGC 4 cut(s) 354, 529, 532, 595
BccI CCATC 4 cut(s) 19, 199, 642, 659
BciT130I CCWGG 2 cut(s) 710, 750
BclI TGATCA 1 cut(s) 469
BcoDI GTCTC 3 cut(s) 241, 629, 802
BfaI CTAG 1 cut(s) 254
BfuAI ACCTGC 1 cut(s) 308
BisI GCNGC 7 cut(s) 343, 427, 430, 433, 543, 546, 609
BlsI GCNGC 7 cut(s) 344, 428, 431, 434, 544, 547, 610
BmcAI AGTACT 1 cut(s) 184
Bme1390I CCNGG 2 cut(s) 710, 750
Bme18I GGWCC 2 cut(s) 668, 773
BmgT120I GGNCC 2 cut(s) 668, 773
BmiI GGNNCC 2 cut(s) 571, 775
BmrFI CCNGG 2 cut(s) 710, 750
BmrI ACTGGG 1 cut(s) 784
BmsI GCATC 3 cut(s) 484, 520, 574
BmuI ACTGGG 1 cut(s) 784
BpmI CTGGAG 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 464
BsaI GGTCTC 1 cut(s) 629
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse118I RCCGGY 2 cut(s) 287, 443
Bse1I ACTGG 3 cut(s) 580, 646, 790
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 2 cut(s) 710, 750
BseGI GGATG 4 cut(s) 653, 718, 725, 805
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 3 cut(s) 580, 646, 790
BseRI GAGGAG 1 cut(s) 448
BseSI GKGCMC 1 cut(s) 661
BseXI GCAGC 4 cut(s) 354, 529, 532, 595
BseYI CCCAGC 1 cut(s) 560
Bsh1236I CGCG 2 cut(s) 139, 592
BshFI GGCC 2 cut(s) 447, 652
BshNI GGYRCC 1 cut(s) 569
BsiHKAI GWGCWC 3 cut(s) 606, 661, 748
BsiSI CCGG 2 cut(s) 288, 444
BslI CCNNNNNNNGG 1 cut(s) 425
BsmAI GTCTC 3 cut(s) 241, 629, 802
BsmBI CGTCTC 1 cut(s) 241
BsnI GGCC 2 cut(s) 447, 652
Bso31I GGTCTC 1 cut(s) 629
Bsp1286I GDGCHC 3 cut(s) 606, 661, 748
Bsp1407I TGTACA 1 cut(s) 722
Bsp143I GATC 2 cut(s) 469, 551
BspACI CCGC 9 cut(s) 53, 59, 137, 264, 276, 393, 426, 429, 432
BspANI GGCC 2 cut(s) 447, 652
BspCNI CTCAG 1 cut(s) 47
BspFNI CGCG 2 cut(s) 139, 592
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 2 cut(s) 571, 775
BspMI ACCTGC 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 569
BspTNI GGTCTC 1 cut(s) 629
BsrDI GCAATG 1 cut(s) 537
BsrFI RCCGGY 2 cut(s) 287, 443
BsrGI TGTACA 1 cut(s) 722
BsrI ACTGG 3 cut(s) 580, 646, 790
BssAI RCCGGY 2 cut(s) 287, 443
BssMI GATC 2 cut(s) 469, 551
Bst2UI CCWGG 2 cut(s) 710, 750
Bst4CI ACNGT 3 cut(s) 359, 501, 515
BstAUI TGTACA 1 cut(s) 722
BstC8I GCNNGC 2 cut(s) 445, 606
BstDEI CTNAG 3 cut(s) 34, 92, 616
BstF5I GGATG 4 cut(s) 653, 718, 725, 805
BstFNI CGCG 2 cut(s) 139, 592
BstHHI GCGC 1 cut(s) 594
BstKTI GATC 2 cut(s) 472, 554
BstMAI GTCTC 3 cut(s) 241, 629, 802
BstMBI GATC 2 cut(s) 469, 551
BstMWI GCNNNNNNNGC 7 cut(s) 293, 330, 339, 432, 453, 539, 617
BstNI CCWGG 2 cut(s) 710, 750
BstSCI CCNGG 2 cut(s) 708, 748
BstSLI GKGCMC 1 cut(s) 661
BstUI CGCG 2 cut(s) 139, 592
BstV1I GCAGC 4 cut(s) 354, 529, 532, 595
BsuRI GGCC 2 cut(s) 447, 652
BtgZI GCGATG 1 cut(s) 450
BtsCI GGATG 4 cut(s) 653, 718, 725, 805
BtsIMutI CAGTG 2 cut(s) 573, 639
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 2 cut(s) 445, 606
CciI TCATGA 1 cut(s) 631
CfoI GCGC 1 cut(s) 594
Cfr10I RCCGGY 2 cut(s) 287, 443
Cfr13I GGNCC 2 cut(s) 668, 773
Csp6I GTAC 5 cut(s) 62, 70, 183, 360, 723
CviAII CATG 4 cut(s) 205, 632, 678, 741
CviQI GTAC 5 cut(s) 62, 70, 183, 360, 723
DdeI CTNAG 3 cut(s) 34, 92, 616
DpnI GATC 2 cut(s) 471, 553
DpnII GATC 2 cut(s) 469, 551
EaeI YGGCCR 1 cut(s) 650
Ecl136II GAGCTC 1 cut(s) 604
Eco24I GRGCYC 1 cut(s) 606
Eco31I GGTCTC 1 cut(s) 629
Eco47I GGWCC 2 cut(s) 668, 773
Eco53kI GAGCTC 1 cut(s) 604
EcoICRI GAGCTC 1 cut(s) 604
EcoO109I RGGNCCY 1 cut(s) 773
EcoRII CCWGG 2 cut(s) 708, 748
EcoT22I ATGCAT 1 cut(s) 679
EcoT38I GRGCYC 1 cut(s) 606
Esp3I CGTCTC 1 cut(s) 241
FaeI CATG 4 cut(s) 208, 635, 681, 744
FatI CATG 4 cut(s) 204, 631, 677, 740
FbaI TGATCA 1 cut(s) 469
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 7 cut(s) 343, 427, 430, 433, 543, 546, 609
FokI GGATG 4 cut(s) 660, 712, 725, 792
FriOI GRGCYC 1 cut(s) 606
Fsp4HI GCNGC 7 cut(s) 343, 427, 430, 433, 543, 546, 609
FspBI CTAG 1 cut(s) 254
GlaI GCGC 1 cut(s) 593
GluI GCNGC 7 cut(s) 343, 427, 430, 433, 543, 546, 609
GsaI CCCAGC 1 cut(s) 564
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 2 cut(s) 447, 652
HapII CCGG 2 cut(s) 288, 444
HhaI GCGC 1 cut(s) 594
Hin1II CATG 4 cut(s) 208, 635, 681, 744
Hin6I GCGC 1 cut(s) 592
HinP1I GCGC 1 cut(s) 592
HinfI GANTC 2 cut(s) 32, 415
HpaII CCGG 2 cut(s) 288, 444
HphI GGTGA 1 cut(s) 778
Hpy166II GTNNAC 2 cut(s) 281, 659
Hpy188I TCNGA 3 cut(s) 37, 414, 820
Hpy188III TCNNGA 2 cut(s) 82, 632
Hpy8I GTNNAC 2 cut(s) 281, 659
HpyAV CCTTC 2 cut(s) 417, 592
HpyCH4III ACNGT 3 cut(s) 359, 501, 515
HpyCH4V TGCA 6 cut(s) 497, 504, 587, 659, 677, 718
HpyF10VI GCNNNNNNNGC 7 cut(s) 293, 330, 339, 432, 453, 539, 617
HpyF3I CTNAG 3 cut(s) 34, 92, 616
Hsp92II CATG 4 cut(s) 208, 635, 681, 744
HspAI GCGC 1 cut(s) 592
KroI GCCGGC 1 cut(s) 443
KroNI GCCGGC 1 cut(s) 445
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 2 cut(s) 469, 551
LmnI GCTCC 4 cut(s) 293, 461, 601, 751
Lsp1109I GCAGC 4 cut(s) 354, 529, 532, 595
LweI GCATC 3 cut(s) 484, 520, 574
MaeI CTAG 1 cut(s) 254
MalI GATC 2 cut(s) 471, 553
MboI GATC 2 cut(s) 469, 551
MboII GAAGA 4 cut(s) 6, 70, 97, 128
MhlI GDGCHC 3 cut(s) 606, 661, 748
MlsI TGGCCA 1 cut(s) 652
MluCI AATT 1 cut(s) 18
MluNI TGGCCA 1 cut(s) 652
MlyI GAGTC 2 cut(s) 26, 409
MmeI TCCRAC 1 cut(s) 437
MnlI CCTC 7 cut(s) 49, 211, 251, 458, 469, 637, 764
Mox20I TGGCCA 1 cut(s) 652
Mph1103I ATGCAT 1 cut(s) 679
MroNI GCCGGC 1 cut(s) 443
MscI TGGCCA 1 cut(s) 652
MseI TTAA 2 cut(s) 167, 823
MslI CAYNNNNRTG 2 cut(s) 48, 209
Msp20I TGGCCA 1 cut(s) 652
MspI CCGG 2 cut(s) 288, 444
MspR9I CCNGG 2 cut(s) 710, 750
MvaI CCWGG 2 cut(s) 710, 750
MvnI CGCG 2 cut(s) 139, 592
MwoI GCNNNNNNNGC 7 cut(s) 293, 330, 339, 432, 453, 539, 617
NaeI GCCGGC 1 cut(s) 445
NdeII GATC 2 cut(s) 469, 551
NgoMIV GCCGGC 1 cut(s) 443
NlaIII CATG 4 cut(s) 208, 635, 681, 744
NlaIV GGNNCC 2 cut(s) 571, 775
NsiI ATGCAT 1 cut(s) 679
PagI TCATGA 1 cut(s) 631
PdiI GCCGGC 1 cut(s) 445
PkrI GCNGC 7 cut(s) 344, 428, 431, 434, 544, 547, 610
PleI GAGTC 2 cut(s) 26, 409
PpsI GAGTC 2 cut(s) 26, 409
PpuMI RGGWCCY 1 cut(s) 773
Psp124BI GAGCTC 1 cut(s) 606
Psp5II RGGWCCY 1 cut(s) 773
Psp6I CCWGG 2 cut(s) 708, 748
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 2 cut(s) 708, 748
PspN4I GGNNCC 2 cut(s) 571, 775
PspPI GGNCC 2 cut(s) 668, 773
PspPPI RGGWCCY 1 cut(s) 773
RsaI GTAC 5 cut(s) 63, 71, 184, 361, 724
RsaNI GTAC 5 cut(s) 62, 70, 183, 360, 723
RseI CAYNNNNRTG 2 cut(s) 48, 209
SacI GAGCTC 1 cut(s) 606
SaqAI TTAA 2 cut(s) 167, 823
SatI GCNGC 7 cut(s) 343, 427, 430, 433, 543, 546, 609
Sau3AI GATC 2 cut(s) 469, 551
Sau96I GGNCC 2 cut(s) 668, 773
ScaI AGTACT 1 cut(s) 184
SchI GAGTC 2 cut(s) 26, 409
ScrFI CCNGG 2 cut(s) 710, 750
SduI GDGCHC 3 cut(s) 606, 661, 748
SetI ASST 9 cut(s) 75, 219, 259, 298, 302, 458, 606, 622, 629
SfaNI GCATC 3 cut(s) 484, 520, 574
SinI GGWCC 2 cut(s) 668, 773
SmiMI CAYNNNNRTG 2 cut(s) 48, 209
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 1 cut(s) 18
SsiI CCGC 9 cut(s) 53, 59, 137, 264, 276, 393, 426, 429, 432
SspMI CTAG 1 cut(s) 254
SstI GAGCTC 1 cut(s) 606
StyD4I CCNGG 2 cut(s) 708, 748
TaaI ACNGT 3 cut(s) 359, 501, 515
TaqI TCGA 3 cut(s) 149, 550, 769
TasI AATT 1 cut(s) 18
TatI WGTACW 3 cut(s) 182, 359, 722
TauI GCSGC 3 cut(s) 429, 432, 435
Tru1I TTAA 2 cut(s) 167, 823
Tru9I TTAA 2 cut(s) 167, 823
TscAI CASTG 2 cut(s) 580, 646
TseI GCWGC 4 cut(s) 342, 542, 545, 608
TspDTI ATGAA 5 cut(s) 221, 227, 526, 714, 794
TspRI CASTG 2 cut(s) 580, 646
VneI GTGCAC 1 cut(s) 657
VpaK11BI GGWCC 2 cut(s) 668, 773
XmiI GTMKAC 1 cut(s) 280
XspI CTAG 1 cut(s) 254
ZrmI AGTACT 1 cut(s) 184
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.