MD15G1234400.v1.1

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000495
Physical Location & Seq
Forward (+)
19239101 .. 19241924
2824 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1234400.v1.1.491

Sequence Viewer

Length: 954 bp
ATGAAGTTGCAAACCCTTATCATTTTGTCCCTAAGTTTGCTGCTAGGGATCTCAGCAGAGCAATGTGGGAGTCAAGCTGGTGGTGCCGTGTGCCCAAATGGGCTGTGTTGTAGCCAGTTTGGGTGGTGTGGCACCACATCCGACTACTGCGCAGCTGGTTGCCAGAGCCAGTGTAGCTCAACCCCTAAACCTACTCCAACCCCAACCCCAAGTGGCGGTGGTGGTGACGTCAGCAGCCTCGTTAGCTCATCTGTTTTCGACCAAATGCTTAAGTATCGAAACGATGGGAGATGCCCTAGTAATGGTTTTTACAAGTATGATGCTTTCATTGCTGCTGCTCGGTCCTTTAATGGGTTTGGCACAACTGGGGATGTTGCTACTCGCAAAAAGGAGCTGGCTGCTTTTTTGGCTCAAACCTCTCATGAGACTACTGGAGGATGGGCAAGTGCACCAGATGGTCCTTATGCATGGGGATATTGCTTTGTCAATGAGAAAAACCAGGATGTGTATTGTACACCGTCCAGCCAATATCCATGTGCTGCCGGCAAGAAATATTATGGCAGAGGACCCATCCAACTCACCCACAACTACAACTATGGTCAAGCGGGCCAAGCAATCGGAAAGGATCTGATAAACAACCCGGATCTAGTGGCCACAGACCCGGTTGTATCATTCAGGACAGCTATATGGTTTTGGATGACTCCACAGGGAAACAAGCCATCAAGCCATGATGTAATCACTGGTAGGTGGAGCCCATCTAGTGCAGACAAATCAGCCGGTCGGGTTCCTGGGTATGGAGTGATCACCAACATCATCAATGGAGGGCTTGAATGCGGCAAAGGTCAGGATGCTAGGGTTGCTAGTCGGATCGGGTTCTACAGAAGGTACTGTGAGATATTGCAAGTCAGCCCGGGAGACAATTTGGATTGTTATAATCAAAGGCCTTTTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

318

Amino Acids

33.84

Weight (kDa)

8.3

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chitin_bind_1 PF00187 21 - 58 4.7e-15 Chitin recognition protein
Glyco_hydro_19 PF00182 80 - 310 2.3e-132 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 933
AatII GACGTC 1 cut(s) 231
Acc16I TGCGCA 1 cut(s) 151
AccB1I GGYRCC 2 cut(s) 83, 131
AciI CCGC 3 cut(s) 216, 605, 834
AclWI GGATC 4 cut(s) 56, 633, 651, 875
AcoI YGGCCR 1 cut(s) 651
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 2 cut(s) 514, 887
AfiI CCNNNNNNNGG 4 cut(s) 215, 302, 351, 794
AflII CTTAAG 1 cut(s) 269
AgsI TTSAA 1 cut(s) 830
AjnI CCWGG 2 cut(s) 498, 787
AluBI AGCT 6 cut(s) 77, 155, 177, 246, 394, 683
AluI AGCT 6 cut(s) 77, 155, 177, 246, 394, 683
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 2 cut(s) 419, 909
Alw44I GTGCAC 1 cut(s) 447
AlwI GGATC 4 cut(s) 56, 633, 651, 875
Ama87I CYCGRG 1 cut(s) 910
AoxI GGCC 3 cut(s) 607, 651, 941
ApaLI GTGCAC 1 cut(s) 447
ApeKI GCWGC 7 cut(s) 40, 152, 234, 332, 335, 398, 539
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 4 cut(s) 342, 458, 566, 607
AsuC2I CCSGG 4 cut(s) 641, 662, 911, 912
AsuHPI GGTGA 3 cut(s) 236, 571, 796
AvaI CYCGRG 1 cut(s) 910
AvaII GGWCC 3 cut(s) 342, 458, 566
BaeGI GKGCMC 2 cut(s) 95, 451
BalI TGGCCA 1 cut(s) 653
BanI GGYRCC 2 cut(s) 83, 131
BanII GRGCYC 1 cut(s) 755
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 7 cut(s) 27, 164, 246, 319, 322, 385, 526
BccI CCATC 6 cut(s) 278, 432, 449, 578, 727, 763
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 2 cut(s) 500, 789
BclI TGATCA 1 cut(s) 801
BcnI CCSGG 4 cut(s) 641, 662, 911, 912
BcoDI GTCTC 2 cut(s) 419, 909
BfaI CTAG 6 cut(s) 44, 297, 647, 759, 852, 861
BfmI CTRYAG 1 cut(s) 877
BfrI CTTAAG 1 cut(s) 269
BisI GCNGC 8 cut(s) 41, 153, 235, 333, 336, 399, 540, 835
BlsI GCNGC 8 cut(s) 42, 154, 236, 334, 337, 400, 541, 836
Bme1390I CCNGG 6 cut(s) 500, 641, 662, 789, 911, 912
Bme18I GGWCC 3 cut(s) 342, 458, 566
BmeT110I CYCGRG 1 cut(s) 910
BmgT120I GGNCC 4 cut(s) 342, 458, 566, 607
BmiI GGNNCC 5 cut(s) 85, 133, 568, 752, 786
BmrFI CCNGG 6 cut(s) 500, 641, 662, 789, 911, 912
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 3 cut(s) 281, 310, 838
BmuI ACTGGG 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 453
BpuMI CCSGG 4 cut(s) 641, 662, 911, 912
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 788, 910
Bsc4I CCNNNNNNNGG 4 cut(s) 215, 302, 351, 794
Bse118I RCCGGY 2 cut(s) 542, 776
Bse1I ACTGG 5 cut(s) 115, 169, 370, 436, 745
Bse3DI GCAATG 2 cut(s) 68, 327
BseBI CCWGG 2 cut(s) 500, 789
BseDI CCNNGG 2 cut(s) 788, 910
BseGI GGATG 7 cut(s) 137, 376, 443, 508, 570, 702, 853
BseLI CCNNNNNNNGG 4 cut(s) 215, 302, 351, 794
BseMI GCAATG 2 cut(s) 68, 327
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 5 cut(s) 115, 169, 370, 436, 745
BseSI GKGCMC 2 cut(s) 95, 451
BseXI GCAGC 7 cut(s) 27, 164, 246, 319, 322, 385, 526
BsgI GTGCAG 1 cut(s) 783
Bsh1285I CGRYCG 1 cut(s) 781
BshFI GGCC 3 cut(s) 609, 653, 943
BshNI GGYRCC 2 cut(s) 83, 131
BsiEI CGRYCG 1 cut(s) 781
BsiHKAI GWGCWC 1 cut(s) 451
BsiHKCI CYCGRG 1 cut(s) 910
BsiSI CCGG 5 cut(s) 543, 641, 662, 777, 911
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 4 cut(s) 215, 302, 351, 794
BsmAI GTCTC 2 cut(s) 419, 909
BsmFI GGGAC 1 cut(s) 13
BsmI GAATGC 1 cut(s) 836
BsnI GGCC 3 cut(s) 609, 653, 943
BsoBI CYCGRG 1 cut(s) 910
Bsp1286I GDGCHC 3 cut(s) 95, 451, 755
Bsp1407I TGTACA 1 cut(s) 512
Bsp143I GATC 5 cut(s) 48, 625, 643, 801, 867
BspACI CCGC 3 cut(s) 216, 605, 834
BspANI GGCC 3 cut(s) 609, 653, 943
BspCNI CTCAG 1 cut(s) 65
BspHI TCATGA 1 cut(s) 421
BspLI GGNNCC 5 cut(s) 85, 133, 568, 752, 786
BspPI GGATC 4 cut(s) 56, 633, 651, 875
BspT107I GGYRCC 2 cut(s) 83, 131
BspTI CTTAAG 1 cut(s) 269
BsrDI GCAATG 2 cut(s) 68, 327
BsrFI RCCGGY 2 cut(s) 542, 776
BsrGI TGTACA 1 cut(s) 512
BsrI ACTGG 5 cut(s) 115, 169, 370, 436, 745
BssAI RCCGGY 2 cut(s) 542, 776
BssECI CCNNGG 2 cut(s) 788, 910
BssMI GATC 5 cut(s) 48, 625, 643, 801, 867
BssNI GRCGYC 1 cut(s) 228
Bst2UI CCWGG 2 cut(s) 500, 789
Bst4CI ACNGT 2 cut(s) 519, 890
BstACI GRCGYC 1 cut(s) 228
BstAFI CTTAAG 1 cut(s) 269
BstAUI TGTACA 1 cut(s) 512
BstC8I GCNNGC 3 cut(s) 396, 544, 607
BstDEI CTNAG 2 cut(s) 32, 52
BstF5I GGATG 7 cut(s) 137, 376, 443, 508, 570, 702, 853
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 5 cut(s) 51, 628, 646, 804, 870
BstMAI GTCTC 2 cut(s) 419, 909
BstMBI GATC 5 cut(s) 48, 625, 643, 801, 867
BstMCI CGRYCG 1 cut(s) 781
BstMWI GCNNNNNNNGC 7 cut(s) 83, 174, 243, 329, 407, 611, 857
BstNI CCWGG 2 cut(s) 500, 789
BstSCI CCNGG 6 cut(s) 498, 639, 660, 787, 909, 910
BstSFI CTRYAG 1 cut(s) 877
BstSLI GKGCMC 2 cut(s) 95, 451
BstV1I GCAGC 7 cut(s) 27, 164, 246, 319, 322, 385, 526
BstX2I RGATCY 3 cut(s) 48, 625, 643
BstYI RGATCY 3 cut(s) 48, 625, 643
BsuRI GGCC 3 cut(s) 609, 653, 943
BtsCI GGATG 7 cut(s) 137, 376, 443, 508, 570, 702, 853
BtsIMutI CAGTG 2 cut(s) 176, 738
Cac8I GCNNGC 3 cut(s) 396, 544, 607
CciI TCATGA 1 cut(s) 421
CfoI GCGC 1 cut(s) 152
Cfr10I RCCGGY 2 cut(s) 542, 776
Cfr13I GGNCC 4 cut(s) 342, 458, 566, 607
Cfr9I CCCGGG 1 cut(s) 910
Csp6I GTAC 2 cut(s) 513, 886
CviAII CATG 4 cut(s) 422, 468, 534, 728
CviQI GTAC 2 cut(s) 513, 886
DdeI CTNAG 2 cut(s) 32, 52
DpnI GATC 5 cut(s) 50, 627, 645, 803, 869
DpnII GATC 5 cut(s) 48, 625, 643, 801, 867
EaeI YGGCCR 1 cut(s) 651
Eco147I AGGCCT 1 cut(s) 943
Eco24I GRGCYC 1 cut(s) 755
Eco47I GGWCC 3 cut(s) 342, 458, 566
Eco88I CYCGRG 1 cut(s) 910
EcoO109I RGGNCCY 1 cut(s) 566
EcoRII CCWGG 2 cut(s) 498, 787
EcoT22I ATGCAT 1 cut(s) 469
EcoT38I GRGCYC 1 cut(s) 755
FaeI CATG 4 cut(s) 425, 471, 537, 731
FaqI GGGAC 1 cut(s) 13
FatI CATG 4 cut(s) 421, 467, 533, 727
FauI CCCGC 1 cut(s) 598
FbaI TGATCA 1 cut(s) 801
Fnu4HI GCNGC 8 cut(s) 41, 153, 235, 333, 336, 399, 540, 835
FokI GGATG 7 cut(s) 124, 383, 450, 515, 557, 709, 860
FriOI GRGCYC 1 cut(s) 755
Fsp4HI GCNGC 8 cut(s) 41, 153, 235, 333, 336, 399, 540, 835
FspBI CTAG 6 cut(s) 44, 297, 647, 759, 852, 861
FspI TGCGCA 1 cut(s) 151
GlaI GCGC 1 cut(s) 151
GluI GCNGC 8 cut(s) 41, 153, 235, 333, 336, 399, 540, 835
GsuI CTGGAG 1 cut(s) 453
HaeIII GGCC 3 cut(s) 609, 653, 943
HapII CCGG 5 cut(s) 543, 641, 662, 777, 911
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 4 cut(s) 425, 471, 537, 731
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 2 cut(s) 70, 700
HpaII CCGG 5 cut(s) 543, 641, 662, 777, 911
HphI GGTGA 3 cut(s) 236, 571, 796
Hpy166II GTNNAC 2 cut(s) 449, 515
Hpy188I TCNGA 4 cut(s) 142, 620, 630, 867
Hpy188III TCNNGA 3 cut(s) 422, 676, 845
Hpy8I GTNNAC 2 cut(s) 449, 515
HpyAV CCTTC 1 cut(s) 876
HpyCH4III ACNGT 2 cut(s) 519, 890
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 5 cut(s) 10, 449, 467, 764, 901
HpyF10VI GCNNNNNNNGC 7 cut(s) 83, 174, 243, 329, 407, 611, 857
HpyF3I CTNAG 2 cut(s) 32, 52
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 4 cut(s) 425, 471, 537, 731
HspAI GCGC 1 cut(s) 150
KroI GCCGGC 1 cut(s) 542
KroNI GCCGGC 1 cut(s) 544
Ksp22I TGATCA 1 cut(s) 801
Kzo9I GATC 5 cut(s) 48, 625, 643, 801, 867
LmnI GCTCC 2 cut(s) 391, 750
Lsp1109I GCAGC 7 cut(s) 27, 164, 246, 319, 322, 385, 526
LweI GCATC 3 cut(s) 281, 310, 838
MaeI CTAG 6 cut(s) 44, 297, 647, 759, 852, 861
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 224
MalI GATC 5 cut(s) 50, 627, 645, 803, 869
MboI GATC 5 cut(s) 48, 625, 643, 801, 867
MflI RGATCY 3 cut(s) 48, 625, 643
MhlI GDGCHC 3 cut(s) 95, 451, 755
MlsI TGGCCA 1 cut(s) 653
MluCI AATT 1 cut(s) 919
MluNI TGGCCA 1 cut(s) 653
MlyI GAGTC 2 cut(s) 79, 694
MmeI TCCRAC 4 cut(s) 165, 221, 598, 845
MnlI CCTC 5 cut(s) 248, 427, 428, 557, 815
Mox20I TGGCCA 1 cut(s) 653
Mph1103I ATGCAT 1 cut(s) 469
MroNI GCCGGC 1 cut(s) 542
MscI TGGCCA 1 cut(s) 653
MseI TTAA 2 cut(s) 270, 348
Msp20I TGGCCA 1 cut(s) 653
MspA1I CMGCKG 1 cut(s) 155
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 5 cut(s) 543, 641, 662, 777, 911
MspR9I CCNGG 6 cut(s) 500, 641, 662, 789, 911, 912
Mva1269I GAATGC 1 cut(s) 836
MvaI CCWGG 2 cut(s) 500, 789
MwoI GCNNNNNNNGC 7 cut(s) 83, 174, 243, 329, 407, 611, 857
NaeI GCCGGC 1 cut(s) 544
NciI CCSGG 4 cut(s) 641, 662, 911, 912
NdeII GATC 5 cut(s) 48, 625, 643, 801, 867
NgoMIV GCCGGC 1 cut(s) 542
NlaIII CATG 4 cut(s) 425, 471, 537, 731
NlaIV GGNNCC 5 cut(s) 85, 133, 568, 752, 786
NmuCI GTSAC 1 cut(s) 224
NsbI TGCGCA 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 469
PagI TCATGA 1 cut(s) 421
PceI AGGCCT 1 cut(s) 943
PctI GAATGC 1 cut(s) 836
PdiI GCCGGC 1 cut(s) 544
PkrI GCNGC 8 cut(s) 42, 154, 236, 334, 337, 400, 541, 836
PleI GAGTC 2 cut(s) 78, 694
PpsI GAGTC 2 cut(s) 78, 694
PpuMI RGGWCCY 1 cut(s) 566
PsiI TTATAA 1 cut(s) 933
Psp5II RGGWCCY 1 cut(s) 566
Psp6I CCWGG 2 cut(s) 498, 787
PspGI CCWGG 2 cut(s) 498, 787
PspN4I GGNNCC 5 cut(s) 85, 133, 568, 752, 786
PspPI GGNCC 4 cut(s) 342, 458, 566, 607
PspPPI RGGWCCY 1 cut(s) 566
PsuI RGATCY 3 cut(s) 48, 625, 643
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 2 cut(s) 514, 887
RsaNI GTAC 2 cut(s) 513, 886
SaqAI TTAA 2 cut(s) 270, 348
SatI GCNGC 8 cut(s) 41, 153, 235, 333, 336, 399, 540, 835
Sau3AI GATC 5 cut(s) 48, 625, 643, 801, 867
Sau96I GGNCC 4 cut(s) 342, 458, 566, 607
SchI GAGTC 2 cut(s) 79, 694
ScrFI CCNGG 6 cut(s) 500, 641, 662, 789, 911, 912
SduI GDGCHC 3 cut(s) 95, 451, 755
SfaNI GCATC 3 cut(s) 281, 310, 838
SfcI CTRYAG 1 cut(s) 877
SinI GGWCC 3 cut(s) 342, 458, 566
SmaI CCCGGG 1 cut(s) 912
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 1 cut(s) 919
SseBI AGGCCT 1 cut(s) 943
SsiI CCGC 3 cut(s) 216, 605, 834
SspI AATATT 1 cut(s) 554
SspMI CTAG 6 cut(s) 44, 297, 647, 759, 852, 861
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 6 cut(s) 498, 639, 660, 787, 909, 910
TaaI ACNGT 2 cut(s) 519, 890
TaiI ACGT 1 cut(s) 231
TaqI TCGA 2 cut(s) 258, 277
TaqII GACCGA 1 cut(s) 330
TasI AATT 1 cut(s) 919
TatI WGTACW 1 cut(s) 512
TauI GCSGC 1 cut(s) 837
Tru1I TTAA 2 cut(s) 270, 348
Tru9I TTAA 2 cut(s) 270, 348
TscAI CASTG 2 cut(s) 176, 745
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 7 cut(s) 40, 152, 234, 332, 335, 398, 539
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 17, 316
TspMI CCCGGG 1 cut(s) 910
TspRI CASTG 2 cut(s) 176, 745
Vha464I CTTAAG 1 cut(s) 269
VneI GTGCAC 1 cut(s) 447
VpaK11BI GGWCC 3 cut(s) 342, 458, 566
XmaI CCCGGG 1 cut(s) 910
XspI CTAG 6 cut(s) 44, 297, 647, 759, 852, 861
ZraI GACGTC 1 cut(s) 229
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.