Rmu_sc0008442.1_g000009

Endochitinase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008442.1
Physical Location & Seq
Forward (+)
28108 .. 29495
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008442.1_g000009.1.cds

Sequence Viewer

Length: 957 bp
atgaaaatgaagctacatacctttatcatcgtctccctcactttgttgctaggtatctccgcagaacaatgcggtagacaagccggtggagctacctgcccgaatgggctatgttgtagcgagtttggctggtgtggcagcacagccgattactgtactaaaaactgccaaagccaatgtagttcaggcggtggctcaaccccttctccgactccaagtggcagcggcggcgatgttgccggcctcgttagctcctctctctttgatcaaatgctcaagtatcgcaacgatgcacggtgcaagggcaacggtttctacaagtatgatgctttcattgctgctgctcgatcattcgctgggtttggcaccactggagatgatgcaacgcgcaagaaggagctcgctgctttcttagctcaaacctctcatgagaccactggtggatggccaagtgcaccagatggtccttatgcatggggttattgctttgtcaatgaaaacaaccaggatgtgcattgtacatccccagaatatccatgtgctcctggcaagaaatactatggtcgaggacccattcaactcacccacaattacaactatgatcaagcgggtaaagcaatcggagcggatctaataaacaatccggacttagtggccacagacccggttgtatcattcaagacagcaatatggttttggatgactccacaatcaaacaaaccatcaagccacgacgtcattaccggccgttggaacccatctgatgcagataaatccgcgggtcgggtccctgggtatggtgtgattactaacatcatcaatggtggacttgaatgtgggcatggtcaagatgataaggtggcggataggatcgggttctatacgaggtacacgggcatattgggagtgagccctggagacaacttggattgctatagccaaaggccctttgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

318

Amino Acids

33.94

Weight (kDa)

6.29

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 738
Acc36I ACCTGC 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 626
AccI GTMKAC 1 cut(s) 76
AccII CGCG 2 cut(s) 388, 779
AccIII TCCGGA 1 cut(s) 643
AclWI GGATC 2 cut(s) 636, 878
AcoI YGGCCR 3 cut(s) 446, 654, 745
AcyI GRCGYC 1 cut(s) 735
AfaI GTAC 3 cut(s) 157, 520, 890
AfiI CCNNNNNNNGG 3 cut(s) 750, 783, 797
AgsI TTSAA 3 cut(s) 578, 679, 833
AjnI CCWGG 4 cut(s) 504, 544, 790, 913
AluBI AGCT 5 cut(s) 13, 92, 252, 400, 416
AluI AGCT 5 cut(s) 13, 92, 252, 400, 416
Alw21I GWGCWC 3 cut(s) 402, 457, 544
Alw26I GTCTC 3 cut(s) 37, 425, 912
Alw44I GTGCAC 1 cut(s) 453
AlwI GGATC 2 cut(s) 636, 878
Aor13HI TCCGGA 1 cut(s) 643
AoxI GGCC 5 cut(s) 241, 446, 654, 745, 944
ApaLI GTGCAC 1 cut(s) 453
ApeKI GCWGC 5 cut(s) 138, 222, 338, 341, 404
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 4 cut(s) 464, 569, 787, 945
AsuC2I CCSGG 1 cut(s) 665
AsuHPI GGTGA 1 cut(s) 574
AvaII GGWCC 3 cut(s) 464, 569, 787
BaeGI GKGCMC 1 cut(s) 457
BalI TGGCCA 2 cut(s) 448, 656
BanI GGYRCC 1 cut(s) 365
BanII GRGCYC 2 cut(s) 402, 914
Bbv12I GWGCWC 3 cut(s) 402, 457, 544
BbvI GCAGC 5 cut(s) 150, 234, 325, 328, 391
BccI CCATC 4 cut(s) 438, 455, 730, 766
BceAI ACGGC 1 cut(s) 732
BciT130I CCWGG 4 cut(s) 506, 546, 792, 915
BclI TGATCA 2 cut(s) 265, 601
BcnI CCSGG 1 cut(s) 665
BcoDI GTCTC 3 cut(s) 37, 425, 912
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 934
BfuAI ACCTGC 1 cut(s) 104
BisI GCNGC 7 cut(s) 139, 223, 226, 229, 339, 342, 405
BlsI GCNGC 7 cut(s) 140, 224, 227, 230, 340, 343, 406
Bme1390I CCNGG 5 cut(s) 506, 546, 665, 792, 915
Bme18I GGWCC 3 cut(s) 464, 569, 787
BmgT120I GGNCC 4 cut(s) 464, 569, 787, 945
BmiI GGNNCC 5 cut(s) 367, 571, 755, 788, 789
BmrFI CCNGG 5 cut(s) 506, 546, 665, 792, 915
BmsI GCATC 4 cut(s) 280, 316, 370, 754
BpmI CTGGAG 2 cut(s) 393, 936
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 665
BsaHI GRCGYC 1 cut(s) 735
BsaI GGTCTC 1 cut(s) 425
BsaJI CCNNGG 4 cut(s) 777, 790, 791, 913
BsaWI WCCGGW 1 cut(s) 643
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 3 cut(s) 750, 783, 797
Bse118I RCCGGY 3 cut(s) 83, 239, 743
Bse1I ACTGG 2 cut(s) 376, 442
Bse3DI GCAATG 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 643
BseBI CCWGG 4 cut(s) 506, 546, 792, 915
BseDI CCNNGG 4 cut(s) 777, 790, 791, 913
BseGI GGATG 4 cut(s) 449, 514, 521, 705
BseLI CCNNNNNNNGG 3 cut(s) 750, 783, 797
BseMI GCAATG 1 cut(s) 333
BseNI ACTGG 2 cut(s) 376, 442
BseRI GAGGAG 1 cut(s) 244
BseSI GKGCMC 1 cut(s) 457
BseX3I CGGCCG 1 cut(s) 745
BseXI GCAGC 5 cut(s) 150, 234, 325, 328, 391
BseYI CCCAGC 1 cut(s) 356
Bsh1236I CGCG 2 cut(s) 388, 779
Bsh1285I CGRYCG 1 cut(s) 748
BshFI GGCC 5 cut(s) 243, 448, 656, 747, 946
BshNI GGYRCC 1 cut(s) 365
BsiEI CGRYCG 1 cut(s) 748
BsiHKAI GWGCWC 3 cut(s) 402, 457, 544
BsiSI CCGG 5 cut(s) 84, 240, 644, 665, 744
BslFI GGGAC 1 cut(s) 773
BslI CCNNNNNNNGG 3 cut(s) 750, 783, 797
BsmAI GTCTC 3 cut(s) 37, 425, 912
BsmBI CGTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 773
BsnI GGCC 5 cut(s) 243, 448, 656, 747, 946
Bso31I GGTCTC 1 cut(s) 425
Bsp1286I GDGCHC 4 cut(s) 402, 457, 544, 914
Bsp13I TCCGGA 1 cut(s) 643
Bsp1407I TGTACA 1 cut(s) 518
Bsp143I GATC 5 cut(s) 265, 347, 601, 628, 870
BspANI GGCC 5 cut(s) 243, 448, 656, 747, 946
BspEI TCCGGA 1 cut(s) 643
BspFNI CGCG 2 cut(s) 388, 779
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 5 cut(s) 367, 571, 755, 788, 789
BspMI ACCTGC 1 cut(s) 104
BspPI GGATC 2 cut(s) 636, 878
BspT107I GGYRCC 1 cut(s) 365
BspTNI GGTCTC 1 cut(s) 425
BsrBI CCGCTC 1 cut(s) 626
BsrDI GCAATG 1 cut(s) 333
BsrFI RCCGGY 3 cut(s) 83, 239, 743
BsrGI TGTACA 1 cut(s) 518
BsrI ACTGG 2 cut(s) 376, 442
BssAI RCCGGY 3 cut(s) 83, 239, 743
BssECI CCNNGG 4 cut(s) 777, 790, 791, 913
BssMI GATC 5 cut(s) 265, 347, 601, 628, 870
BssNI GRCGYC 1 cut(s) 735
Bst2UI CCWGG 4 cut(s) 506, 546, 792, 915
Bst4CI ACNGT 3 cut(s) 155, 297, 311
BstACI GRCGYC 1 cut(s) 735
BstAUI TGTACA 1 cut(s) 518
BstC8I GCNNGC 2 cut(s) 241, 402
BstDEI CTNAG 2 cut(s) 412, 649
BstDSI CCRYGG 1 cut(s) 777
BstF5I GGATG 4 cut(s) 449, 514, 521, 705
BstFNI CGCG 2 cut(s) 388, 779
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 5 cut(s) 268, 350, 604, 631, 873
BstMAI GTCTC 3 cut(s) 37, 425, 912
BstMBI GATC 5 cut(s) 265, 347, 601, 628, 870
BstMCI CGRYCG 1 cut(s) 748
BstMWI GCNNNNNNNGC 9 cut(s) 89, 126, 135, 228, 249, 335, 413, 614, 623
BstNI CCWGG 4 cut(s) 506, 546, 792, 915
BstSCI CCNGG 5 cut(s) 504, 544, 663, 790, 913
BstSFI CTRYAG 1 cut(s) 934
BstSLI GKGCMC 1 cut(s) 457
BstUI CGCG 2 cut(s) 388, 779
BstV1I GCAGC 5 cut(s) 150, 234, 325, 328, 391
BstX2I RGATCY 1 cut(s) 628
BstYI RGATCY 1 cut(s) 628
BstZI CGGCCG 1 cut(s) 745
BsuRI GGCC 5 cut(s) 243, 448, 656, 747, 946
BtgI CCRYGG 1 cut(s) 777
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 4 cut(s) 449, 514, 521, 705
BtsIMutI CAGTG 2 cut(s) 369, 435
BveI ACCTGC 1 cut(s) 104
Cac8I GCNNGC 2 cut(s) 241, 402
CciI TCATGA 1 cut(s) 427
CfoI GCGC 1 cut(s) 390
Cfr10I RCCGGY 3 cut(s) 83, 239, 743
Cfr13I GGNCC 4 cut(s) 464, 569, 787, 945
Cfr42I CCGCGG 1 cut(s) 780
Csp6I GTAC 3 cut(s) 156, 519, 889
CviAII CATG 4 cut(s) 428, 474, 537, 842
CviQI GTAC 3 cut(s) 156, 519, 889
DdeI CTNAG 2 cut(s) 412, 649
DpnI GATC 5 cut(s) 267, 349, 603, 630, 872
DpnII GATC 5 cut(s) 265, 347, 601, 628, 870
EaeI YGGCCR 3 cut(s) 446, 654, 745
EagI CGGCCG 1 cut(s) 745
EciI GGCGGA 1 cut(s) 878
Ecl136II GAGCTC 1 cut(s) 400
EclXI CGGCCG 1 cut(s) 745
Eco24I GRGCYC 2 cut(s) 402, 914
Eco31I GGTCTC 1 cut(s) 425
Eco47I GGWCC 3 cut(s) 464, 569, 787
Eco52I CGGCCG 1 cut(s) 745
Eco53kI GAGCTC 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 400
EcoO109I RGGNCCY 3 cut(s) 569, 787, 945
EcoRII CCWGG 4 cut(s) 504, 544, 790, 913
EcoT22I ATGCAT 1 cut(s) 475
EcoT38I GRGCYC 2 cut(s) 402, 914
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 4 cut(s) 431, 477, 540, 845
FaqI GGGAC 1 cut(s) 773
FatI CATG 4 cut(s) 427, 473, 536, 841
FauI CCCGC 2 cut(s) 601, 772
FbaI TGATCA 2 cut(s) 265, 601
FblI GTMKAC 1 cut(s) 76
Fnu4HI GCNGC 7 cut(s) 139, 223, 226, 229, 339, 342, 405
FokI GGATG 4 cut(s) 456, 508, 521, 712
FriOI GRGCYC 2 cut(s) 402, 914
Fsp4HI GCNGC 7 cut(s) 139, 223, 226, 229, 339, 342, 405
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 389
GluI GCNGC 7 cut(s) 139, 223, 226, 229, 339, 342, 405
GsaI CCCAGC 1 cut(s) 360
GsuI CTGGAG 2 cut(s) 393, 936
HaeIII GGCC 5 cut(s) 243, 448, 656, 747, 946
HapII CCGG 5 cut(s) 84, 240, 644, 665, 744
HhaI GCGC 1 cut(s) 390
Hin1I GRCGYC 1 cut(s) 735
Hin1II CATG 4 cut(s) 431, 477, 540, 845
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HinfI GANTC 2 cut(s) 211, 703
HpaII CCGG 5 cut(s) 84, 240, 644, 665, 744
HphI GGTGA 1 cut(s) 574
Hpy166II GTNNAC 4 cut(s) 77, 455, 827, 891
Hpy188I TCNGA 3 cut(s) 210, 623, 763
Hpy188III TCNNGA 4 cut(s) 428, 644, 679, 848
Hpy8I GTNNAC 4 cut(s) 77, 455, 827, 891
Hpy99I CGWCG 1 cut(s) 737
HpyAV CCTTC 2 cut(s) 213, 388
HpyCH4III ACNGT 3 cut(s) 155, 297, 311
HpyCH4IV ACGT 1 cut(s) 735
HpyCH4V TGCA 7 cut(s) 293, 300, 383, 455, 473, 514, 767
HpyF10VI GCNNNNNNNGC 9 cut(s) 89, 126, 135, 228, 249, 335, 413, 614, 623
HpyF3I CTNAG 2 cut(s) 412, 649
HpySE526I ACGT 1 cut(s) 735
Hsp92I GRCGYC 1 cut(s) 735
Hsp92II CATG 4 cut(s) 431, 477, 540, 845
HspAI GCGC 1 cut(s) 388
KflI GGGWCCC 1 cut(s) 787
Kpn2I TCCGGA 1 cut(s) 643
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
Ksp22I TGATCA 2 cut(s) 265, 601
KspI CCGCGG 1 cut(s) 780
Kzo9I GATC 5 cut(s) 265, 347, 601, 628, 870
LmnI GCTCC 5 cut(s) 89, 257, 397, 547, 623
Lsp1109I GCAGC 5 cut(s) 150, 234, 325, 328, 391
LweI GCATC 4 cut(s) 280, 316, 370, 754
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 735
MalI GATC 5 cut(s) 267, 349, 603, 630, 872
MbiI CCGCTC 1 cut(s) 626
MboI GATC 5 cut(s) 265, 347, 601, 628, 870
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 4 cut(s) 402, 457, 544, 914
MlsI TGGCCA 2 cut(s) 448, 656
MluCI AATT 1 cut(s) 589
MluNI TGGCCA 2 cut(s) 448, 656
MlyI GAGTC 2 cut(s) 205, 697
MmeI TCCRAC 2 cut(s) 233, 731
MnlI CCTC 6 cut(s) 47, 254, 265, 433, 560, 879
Mox20I TGGCCA 2 cut(s) 448, 656
Mph1103I ATGCAT 1 cut(s) 475
MroI TCCGGA 1 cut(s) 643
MroNI GCCGGC 1 cut(s) 239
MscI TGGCCA 2 cut(s) 448, 656
Msp20I TGGCCA 2 cut(s) 448, 656
MspA1I CMGCKG 2 cut(s) 225, 779
MspI CCGG 5 cut(s) 84, 240, 644, 665, 744
MspR9I CCNGG 5 cut(s) 506, 546, 665, 792, 915
MvaI CCWGG 4 cut(s) 506, 546, 792, 915
MvnI CGCG 2 cut(s) 388, 779
MwoI GCNNNNNNNGC 9 cut(s) 89, 126, 135, 228, 249, 335, 413, 614, 623
NaeI GCCGGC 1 cut(s) 241
NciI CCSGG 1 cut(s) 665
NdeII GATC 5 cut(s) 265, 347, 601, 628, 870
NgoMIV GCCGGC 1 cut(s) 239
NlaIII CATG 4 cut(s) 431, 477, 540, 845
NlaIV GGNNCC 5 cut(s) 367, 571, 755, 788, 789
NsiI ATGCAT 1 cut(s) 475
PagI TCATGA 1 cut(s) 427
PasI CCCWGGG 1 cut(s) 791
PdiI GCCGGC 1 cut(s) 241
PkrI GCNGC 7 cut(s) 140, 224, 227, 230, 340, 343, 406
PleI GAGTC 2 cut(s) 205, 697
PpsI GAGTC 2 cut(s) 205, 697
PpuMI RGGWCCY 2 cut(s) 569, 787
Psp124BI GAGCTC 1 cut(s) 402
Psp5II RGGWCCY 2 cut(s) 569, 787
Psp6I CCWGG 4 cut(s) 504, 544, 790, 913
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 4 cut(s) 504, 544, 790, 913
PspN4I GGNNCC 5 cut(s) 367, 571, 755, 788, 789
PspPI GGNCC 4 cut(s) 464, 569, 787, 945
PspPPI RGGWCCY 2 cut(s) 569, 787
PsuI RGATCY 1 cut(s) 628
RsaI GTAC 3 cut(s) 157, 520, 890
RsaNI GTAC 3 cut(s) 156, 519, 889
SacI GAGCTC 1 cut(s) 402
SacII CCGCGG 1 cut(s) 780
SatI GCNGC 7 cut(s) 139, 223, 226, 229, 339, 342, 405
Sau3AI GATC 5 cut(s) 265, 347, 601, 628, 870
Sau96I GGNCC 4 cut(s) 464, 569, 787, 945
SchI GAGTC 2 cut(s) 205, 697
ScrFI CCNGG 5 cut(s) 506, 546, 665, 792, 915
SduI GDGCHC 4 cut(s) 402, 457, 544, 914
SfaNI GCATC 4 cut(s) 280, 316, 370, 754
SfcI CTRYAG 1 cut(s) 934
Sfr303I CCGCGG 1 cut(s) 780
SgrBI CCGCGG 1 cut(s) 780
SinI GGWCC 3 cut(s) 464, 569, 787
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 1 cut(s) 589
SspMI CTAG 1 cut(s) 50
SstI GAGCTC 1 cut(s) 402
StyD4I CCNGG 5 cut(s) 504, 544, 663, 790, 913
TaaI ACNGT 3 cut(s) 155, 297, 311
TaiI ACGT 1 cut(s) 738
TaqI TCGA 2 cut(s) 346, 565
TasI AATT 1 cut(s) 589
TatI WGTACW 2 cut(s) 155, 518
TauI GCSGC 2 cut(s) 228, 231
TscAI CASTG 2 cut(s) 376, 442
TseI GCWGC 5 cut(s) 138, 222, 338, 341, 404
TspDTI ATGAA 4 cut(s) 17, 23, 322, 510
TspRI CASTG 2 cut(s) 376, 442
VneI GTGCAC 1 cut(s) 453
VpaK11BI GGWCC 3 cut(s) 464, 569, 787
XmiI GTMKAC 1 cut(s) 76
XspI CTAG 1 cut(s) 50
ZraI GACGTC 1 cut(s) 736
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.