Rh6CG243400

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000495
Physical Location & Seq
Reverse (-)
41002714 .. 41019102
16389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG243400.1

Sequence Viewer

Length: 459 bp
ATGGCTGGTGTGGCACTACACCTCATTATTGCGGCAACGGTTGCCAAAGCCAATGCGGCCGCGGGTCTAGTATCACAGAACACCTTTGATCAGATACTTAAGCATCGAAACGATGGTGGTTGCCCTGCCAAATGGTTTTATACTTATGATGCTTTTATTGCAGCTGCCAAGGCTTTCCCCGGCTTTGCTACTACTGGTGACACTGCCACCCGTAAAAGGGAGATTGCTGCTTTCTTAGCCCAAACTTCTCATGAAACTACTGTTTTTGAGGCTGTTTGTTACCTTGTGGTCATTCAGAAAGCATATAGGTTTTCCGAAATTCCAAGCAGATCAATAAAACAAACAAGACAAAAGGTATGTAATTTACTTATCTATCATCAGTGGAGGAAGACCGCTGAGGCAGCTCCTGCTATTTTGACAGAACAGATCATAATGATGGTGCACACAGTTCAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

152

Amino Acids

16.77

Weight (kDa)

9.4

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 23 - 94 1.4e-30 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 62
AciI CCGC 5 cut(s) 32, 56, 60, 62, 393
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 2 cut(s) 318, 453
AfiI CCNNNNNNNGG 2 cut(s) 216, 217
AflII CTTAAG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 452
AluBI AGCT 2 cut(s) 164, 404
AluI AGCT 2 cut(s) 164, 404
Alw21I GWGCWC 1 cut(s) 444
Alw44I GTGCAC 1 cut(s) 440
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 1 cut(s) 57
ApaLI GTGCAC 1 cut(s) 440
ApeKI GCWGC 4 cut(s) 161, 164, 227, 401
ApoI RAATTY 2 cut(s) 318, 453
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 209
BaeGI GKGCMC 1 cut(s) 444
BbsI GAAGAC 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 444
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 4 cut(s) 151, 173, 214, 413
BccI CCATC 2 cut(s) 107, 430
BclI TGATCA 1 cut(s) 88
BcnI CCSGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 98
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 7 cut(s) 33, 57, 60, 162, 165, 228, 402
BlsI GCNGC 7 cut(s) 34, 58, 61, 163, 166, 229, 403
Bme1390I CCNGG 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 2 cut(s) 112, 139
BpiI GAAGAC 1 cut(s) 395
Bpu10I CCTNAGC 1 cut(s) 396
BpuMI CCSGG 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 60, 168, 178
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 217
Bse1I ACTGG 1 cut(s) 199
BseDI CCNNGG 3 cut(s) 60, 168, 178
BseLI CCNNNNNNNGG 2 cut(s) 216, 217
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 444
BseX3I CGGCCG 1 cut(s) 57
BseXI GCAGC 4 cut(s) 151, 173, 214, 413
Bsh1236I CGCG 1 cut(s) 62
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 444
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 2 cut(s) 216, 217
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 3 cut(s) 88, 329, 426
BspACI CCGC 5 cut(s) 32, 56, 60, 62, 393
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 388
BspFNI CGCG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 250
BspTI CTTAAG 1 cut(s) 98
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 3 cut(s) 60, 168, 178
BssMI GATC 3 cut(s) 88, 329, 426
BssT1I CCWWGG 1 cut(s) 168
Bst4CI ACNGT 3 cut(s) 40, 262, 448
BstAFI CTTAAG 1 cut(s) 98
BstAPI GCANNNNNTGC 2 cut(s) 41, 407
BstDEI CTNAG 2 cut(s) 235, 396
BstDSI CCRYGG 1 cut(s) 60
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 3 cut(s) 91, 332, 429
BstMBI GATC 3 cut(s) 88, 329, 426
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 8 cut(s) 11, 41, 56, 158, 170, 236, 401, 407
BstSCI CCNGG 1 cut(s) 178
BstSLI GKGCMC 1 cut(s) 444
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 4 cut(s) 151, 173, 214, 413
BstV2I GAAGAC 1 cut(s) 395
BstZI CGGCCG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 201, 386
CaiI CAGNNNCTG 1 cut(s) 407
CciI TCATGA 1 cut(s) 250
CciNI GCGGCCGC 1 cut(s) 57
Cfr42I CCGCGG 1 cut(s) 63
CviAII CATG 1 cut(s) 251
CviJI RGCY 9 cut(s) 5, 50, 59, 164, 173, 183, 239, 272, 404
CviKI_1 RGCY 9 cut(s) 5, 50, 59, 164, 173, 183, 239, 272, 404
DdeI CTNAG 2 cut(s) 235, 396
DpnI GATC 3 cut(s) 90, 331, 428
DpnII GATC 3 cut(s) 88, 329, 426
EaeI YGGCCR 1 cut(s) 57
EagI CGGCCG 1 cut(s) 57
EclXI CGGCCG 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 168
Eco52I CGGCCG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 1 cut(s) 254
FaiI YATR 7 cut(s) 141, 147, 252, 304, 306, 358, 431
FatI CATG 1 cut(s) 250
FauI CCCGC 1 cut(s) 55
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 7 cut(s) 33, 57, 60, 162, 165, 228, 402
Fsp4HI GCNGC 7 cut(s) 33, 57, 60, 162, 165, 228, 402
FspBI CTAG 1 cut(s) 68
GluI GCNGC 7 cut(s) 33, 57, 60, 162, 165, 228, 402
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 180
Hin1II CATG 1 cut(s) 254
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 3 cut(s) 93, 297, 316
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 442
HpyCH4III ACNGT 3 cut(s) 40, 262, 448
HpyCH4V TGCA 2 cut(s) 161, 442
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 41, 56, 158, 170, 236, 401, 407
HpyF3I CTNAG 2 cut(s) 235, 396
Hsp92II CATG 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 88
KspI CCGCGG 1 cut(s) 63
Kzo9I GATC 3 cut(s) 88, 329, 426
LmnI GCTCC 1 cut(s) 409
LpnPI CCDG 4 cut(s) 138, 180, 193, 420
Lsp1109I GCAGC 4 cut(s) 151, 173, 214, 413
LweI GCATC 2 cut(s) 112, 139
MaeI CTAG 1 cut(s) 68
MaeIII GTNAC 2 cut(s) 197, 278
MalI GATC 3 cut(s) 90, 331, 428
MboI GATC 3 cut(s) 88, 329, 426
MboII GAAGA 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 3 cut(s) 318, 361, 453
MnlI CCTC 4 cut(s) 32, 262, 378, 391
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 434
MspA1I CMGCKG 3 cut(s) 62, 164, 395
MspCI CTTAAG 1 cut(s) 98
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 8 cut(s) 11, 41, 56, 158, 170, 236, 401, 407
NciI CCSGG 1 cut(s) 180
NdeII GATC 3 cut(s) 88, 329, 426
NlaIII CATG 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 197
NotI GCGGCCGC 1 cut(s) 57
PagI TCATGA 1 cut(s) 250
PkrI GCNGC 7 cut(s) 34, 58, 61, 163, 166, 229, 403
PstNI CAGNNNCTG 1 cut(s) 407
PvuII CAGCTG 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 434
SacII CCGCGG 1 cut(s) 63
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 7 cut(s) 33, 57, 60, 162, 165, 228, 402
Sau3AI GATC 3 cut(s) 88, 329, 426
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 1 cut(s) 444
SetI ASST 7 cut(s) 24, 86, 166, 285, 311, 357, 406
SfaNI GCATC 2 cut(s) 112, 139
Sfr303I CCGCGG 1 cut(s) 63
SgrBI CCGCGG 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 3 cut(s) 318, 361, 453
SsiI CCGC 5 cut(s) 32, 56, 60, 62, 393
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 178
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 3 cut(s) 40, 262, 448
TaqI TCGA 1 cut(s) 106
TasI AATT 3 cut(s) 318, 361, 453
TauI GCSGC 3 cut(s) 35, 59, 62
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 2 cut(s) 208, 386
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 4 cut(s) 161, 164, 227, 401
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 2 cut(s) 208, 386
Vha464I CTTAAG 1 cut(s) 98
VneI GTGCAC 1 cut(s) 440
XapI RAATTY 2 cut(s) 318, 453
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.