RLG00000013114

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000495
Physical Location & Seq
Forward (+)
26342151 .. 26343788
1638 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013114

Sequence Viewer

Length: 924 bp
ATGTTGTACTTGGCCTTGTCATATGTTTCTCTTCTATTGTCCTTTAATATCCTAGGAGGCTCAGCAGAGGAATGTGGATGGCAAGTAGGAGGTGCTTGGTGCCCGGGAGGGCAATGCTGCAGCCAGTATGGCTGGTGTGGCACTACACCTGATTATTGCGGCAACGGTTGCCAAAGCCAATGCGGCGGCGGCGGCAGTGACATTGGGGGTCTAGTATCACAGAACACCTTTGATCAGATAATTAAGCATCGAAACGATGGTGGTTGCCCTGCCAAATGGTTTTATACTTACGATGCTTTTATTGCAGCTGCCAAGGCTTTCCCCGGCTTTGCCACTACTGGTGACACTGCCACCCGTAAAAGGGAGATTGCTGCTTTCTTTGCCCAAACTTCTCATGAAACTAGTGGGGGATGGGGGACCGCACCTGATGGACCATATTCATGGGGCTATTGTTATAACAAGGAGCAAAATCCACGAGCTTACTGTGCCTGGGATCCAAATTATCCATGTGCTGCTGGTAAGCAGTATTATGGCCGTGGAGCGAACCTGTTGAACGACCCGGACCTTGTTGCCACAGACCCTGTCATCTCCTTCAAGACAGCAATCTGGTTCTGGATGACCCCTCAGTCACCCAAGCATTCATGCCATGATGTCATCACCTGGAGATGGAACCCTTCCGGAGCTGATCAGTCAGCGGGTAGGTATTCCGGGTATGGTACGATCACAAATATCATCAACGGTGGACTCGAATGTGGTAAAGGATGGGATGGGAGAGTGGCGGACCGCATTGGGTTTTTCAAGAGGTACTGTGATTTGCTTGGGATTGGTTATGGTGACAACCTTGACTGTTATAATCAGAAGCCTTTTGGGTCTGGACTCAGTACTTATTATTCATCCTCAAGAGAGTCGATCGATGTAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

308

Amino Acids

33.34

Weight (kDa)

5.55

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chitin_bind_1 PF00187 24 - 61 2.6e-13 Chitin recognition protein
Glyco_hydro_19 PF00182 71 - 180 2.9e-50 Chitinase class I
Glyco_hydro_19 PF00182 180 - 283 1.3e-53 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 456, 852
AasI GACNNNNNNGTC 1 cut(s) 625
AccB1I GGYRCC 1 cut(s) 99
AccIII TCCGGA 1 cut(s) 677
AciI CCGC 9 cut(s) 159, 183, 186, 189, 192, 420, 695, 779, 784
AclWI GGATC 2 cut(s) 488, 501
AcoI YGGCCR 1 cut(s) 532
AfaI GTAC 4 cut(s) 8, 718, 806, 883
AfiI CCNNNNNNNGG 3 cut(s) 360, 361, 666
AgsI TTSAA 3 cut(s) 553, 595, 799
AhlI ACTAGT 1 cut(s) 401
AjnI CCWGG 2 cut(s) 488, 659
AluBI AGCT 3 cut(s) 308, 479, 683
AluI AGCT 3 cut(s) 308, 479, 683
AlwI GGATC 2 cut(s) 488, 501
AlwNI CAGNNNCTG 1 cut(s) 581
Ama87I CYCGRG 1 cut(s) 103
Aor13HI TCCGGA 1 cut(s) 677
AoxI GGCC 2 cut(s) 12, 532
ApeKI GCWGC 6 cut(s) 117, 120, 305, 308, 371, 512
AspA2I CCTAGG 1 cut(s) 52
AspS9I GGNCC 4 cut(s) 417, 431, 562, 781
AsuC2I CCSGG 5 cut(s) 104, 105, 324, 560, 709
AsuHPI GGTGA 4 cut(s) 353, 621, 649, 845
AvaI CYCGRG 1 cut(s) 103
AvaII GGWCC 4 cut(s) 417, 431, 562, 781
AvrII CCTAGG 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 104
BamHI GGATCC 1 cut(s) 493
BanI GGYRCC 1 cut(s) 99
BauI CACGAG 1 cut(s) 474
BbvI GCAGC 6 cut(s) 104, 132, 295, 317, 358, 499
BccI CCATC 7 cut(s) 72, 251, 405, 422, 660, 756, 761
BceAI ACGGC 1 cut(s) 519
BciT130I CCWGG 2 cut(s) 490, 661
BclI TGATCA 2 cut(s) 232, 685
BcnI CCSGG 5 cut(s) 104, 105, 324, 560, 709
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 3 cut(s) 53, 212, 402
BfmI CTRYAG 1 cut(s) 118
BglI GCCNNNNNGGC 2 cut(s) 129, 183
BlnI CCTAGG 1 cut(s) 52
BlpI GCTNAGC 1 cut(s) 61
BmcAI AGTACT 1 cut(s) 883
Bme1390I CCNGG 7 cut(s) 104, 105, 324, 490, 560, 661, 709
Bme18I GGWCC 4 cut(s) 417, 431, 562, 781
BmeT110I CYCGRG 1 cut(s) 103
BmgT120I GGNCC 4 cut(s) 417, 431, 562, 781
BmiI GGNNCC 4 cut(s) 101, 418, 495, 671
BmrFI CCNGG 7 cut(s) 104, 105, 324, 490, 560, 661, 709
BmsI GCATC 2 cut(s) 256, 283
BpmI CTGGAG 1 cut(s) 682
Bpu1102I GCTNAGC 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 883
BpuMI CCSGG 5 cut(s) 104, 105, 324, 560, 709
Bsa29I ATCGAT 1 cut(s) 912
BsaJI CCNNGG 6 cut(s) 52, 103, 312, 322, 489, 535
BsaWI WCCGGW 1 cut(s) 677
Bsc4I CCNNNNNNNGG 3 cut(s) 360, 361, 666
Bse1I ACTGG 2 cut(s) 124, 343
Bse3DI GCAATG 1 cut(s) 119
BseAI TCCGGA 1 cut(s) 677
BseBI CCWGG 2 cut(s) 490, 661
BseCI ATCGAT 1 cut(s) 912
BseDI CCNNGG 6 cut(s) 52, 103, 312, 322, 489, 535
BseGI GGATG 6 cut(s) 83, 416, 621, 767, 772, 893
BseLI CCNNNNNNNGG 3 cut(s) 360, 361, 666
BseMI GCAATG 1 cut(s) 119
BseMII CTCAG 3 cut(s) 75, 638, 892
BseNI ACTGG 2 cut(s) 124, 343
BseSI GKGCMC 1 cut(s) 104
BseXI GCAGC 6 cut(s) 104, 132, 295, 317, 358, 499
Bsh1285I CGRYCG 1 cut(s) 912
BshFI GGCC 2 cut(s) 14, 534
BshNI GGYRCC 1 cut(s) 99
BshVI ATCGAT 1 cut(s) 912
BsiEI CGRYCG 1 cut(s) 912
BsiHKCI CYCGRG 1 cut(s) 103
BsiSI CCGG 5 cut(s) 104, 324, 560, 678, 708
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 3 cut(s) 360, 361, 666
BsmFI GGGAC 1 cut(s) 430
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 2 cut(s) 14, 534
BsoBI CYCGRG 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 104
Bsp13I TCCGGA 1 cut(s) 677
Bsp143I GATC 5 cut(s) 232, 493, 685, 720, 909
Bsp1720I GCTNAGC 1 cut(s) 61
BspACI CCGC 9 cut(s) 159, 183, 186, 189, 192, 420, 695, 779, 784
BspANI GGCC 2 cut(s) 14, 534
BspCNI CTCAG 3 cut(s) 74, 637, 891
BspDI ATCGAT 1 cut(s) 912
BspEI TCCGGA 1 cut(s) 677
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 4 cut(s) 101, 418, 495, 671
BspMAI CTGCAG 1 cut(s) 122
BspPI GGATC 2 cut(s) 488, 501
BspT107I GGYRCC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 119
BsrI ACTGG 2 cut(s) 124, 343
BssECI CCNNGG 6 cut(s) 52, 103, 312, 322, 489, 535
BssMI GATC 5 cut(s) 232, 493, 685, 720, 909
BssSI CACGAG 1 cut(s) 474
BssT1I CCWWGG 2 cut(s) 52, 312
Bst2BI CACGAG 1 cut(s) 474
Bst2UI CCWGG 2 cut(s) 490, 661
Bst4CI ACNGT 5 cut(s) 167, 485, 740, 809, 848
Bst6I CTCTTC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 168
BstDEI CTNAG 3 cut(s) 61, 624, 878
BstDSI CCRYGG 1 cut(s) 535
BstF5I GGATG 6 cut(s) 83, 416, 621, 767, 772, 893
BstKTI GATC 5 cut(s) 235, 496, 688, 723, 912
BstMBI GATC 5 cut(s) 232, 493, 685, 720, 909
BstMCI CGRYCG 1 cut(s) 912
BstNI CCWGG 2 cut(s) 490, 661
BstSCI CCNGG 7 cut(s) 102, 103, 322, 488, 558, 659, 707
BstSFI CTRYAG 1 cut(s) 118
BstSLI GKGCMC 1 cut(s) 104
BstV1I GCAGC 6 cut(s) 104, 132, 295, 317, 358, 499
BstX2I RGATCY 1 cut(s) 493
BstXI CCANNNNNNTGG 1 cut(s) 441
BstYI RGATCY 1 cut(s) 493
Bsu15I ATCGAT 1 cut(s) 912
BsuRI GGCC 2 cut(s) 14, 534
BsuTUI ATCGAT 1 cut(s) 912
BtgI CCRYGG 1 cut(s) 535
BtsCI GGATG 6 cut(s) 83, 416, 621, 767, 772, 893
BtsI GCAGTG 2 cut(s) 202, 345
BtsIMutI CAGTG 2 cut(s) 202, 345
CaiI CAGNNNCTG 1 cut(s) 581
CciI TCATGA 1 cut(s) 394
Cfr13I GGNCC 4 cut(s) 417, 431, 562, 781
Cfr9I CCCGGG 1 cut(s) 103
ClaI ATCGAT 1 cut(s) 912
CpoI CGGWCCG 1 cut(s) 781
Csp6I GTAC 4 cut(s) 7, 717, 805, 882
CspI CGGWCCG 1 cut(s) 781
CviAII CATG 5 cut(s) 395, 441, 507, 642, 647
CviQI GTAC 4 cut(s) 7, 717, 805, 882
DdeI CTNAG 3 cut(s) 61, 624, 878
DpnI GATC 5 cut(s) 234, 495, 687, 722, 911
DpnII GATC 5 cut(s) 232, 493, 685, 720, 909
DrdI GACNNNNNNGTC 1 cut(s) 625
DseDI GACNNNNNNGTC 1 cut(s) 625
EaeI YGGCCR 1 cut(s) 532
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EciI GGCGGA 1 cut(s) 794
Eco130I CCWWGG 2 cut(s) 52, 312
Eco47I GGWCC 4 cut(s) 417, 431, 562, 781
Eco88I CYCGRG 1 cut(s) 103
EcoRII CCWGG 2 cut(s) 488, 659
EcoT14I CCWWGG 2 cut(s) 52, 312
ErhI CCWWGG 2 cut(s) 52, 312
FaeI CATG 5 cut(s) 398, 444, 510, 645, 650
FaqI GGGAC 1 cut(s) 430
FatI CATG 5 cut(s) 394, 440, 506, 641, 646
FauI CCCGC 1 cut(s) 688
FauNDI CATATG 1 cut(s) 22
FbaI TGATCA 2 cut(s) 232, 685
FokI GGATG 6 cut(s) 90, 423, 628, 774, 779, 880
FspBI CTAG 3 cut(s) 53, 212, 402
GsuI CTGGAG 1 cut(s) 682
HaeIII GGCC 2 cut(s) 14, 534
HapII CCGG 5 cut(s) 104, 324, 560, 678, 708
Hin1II CATG 5 cut(s) 398, 444, 510, 645, 650
HinfI GANTC 3 cut(s) 744, 876, 905
HpaII CCGG 5 cut(s) 104, 324, 560, 678, 708
HphI GGTGA 4 cut(s) 353, 621, 649, 845
Hpy166II GTNNAC 1 cut(s) 743
Hpy188I TCNGA 2 cut(s) 237, 858
Hpy188III TCNNGA 7 cut(s) 395, 595, 613, 678, 799, 873, 900
Hpy8I GTNNAC 1 cut(s) 743
HpyAV CCTTC 2 cut(s) 601, 684
HpyCH4III ACNGT 5 cut(s) 167, 485, 740, 809, 848
HpyCH4V TGCA 2 cut(s) 120, 305
HpyF3I CTNAG 3 cut(s) 61, 624, 878
Hsp92II CATG 5 cut(s) 398, 444, 510, 645, 650
Kpn2I TCCGGA 1 cut(s) 677
Ksp22I TGATCA 2 cut(s) 232, 685
Kzo9I GATC 5 cut(s) 232, 493, 685, 720, 909
LmnI GCTCC 3 cut(s) 463, 539, 680
Lsp1109I GCAGC 6 cut(s) 104, 132, 295, 317, 358, 499
LweI GCATC 2 cut(s) 256, 283
MaeI CTAG 3 cut(s) 53, 212, 402
MaeIII GTNAC 4 cut(s) 197, 341, 627, 833
MalI GATC 5 cut(s) 234, 495, 687, 722, 911
MboI GATC 5 cut(s) 232, 493, 685, 720, 909
MboII GAAGA 1 cut(s) 23
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 2 cut(s) 240, 499
MlyI GAGTC 3 cut(s) 738, 870, 914
MnlI CCTC 7 cut(s) 50, 61, 83, 101, 633, 795, 907
MroI TCCGGA 1 cut(s) 677
MseI TTAA 2 cut(s) 45, 243
MslI CAYNNNNRTG 1 cut(s) 439
MspA1I CMGCKG 2 cut(s) 308, 695
MspI CCGG 5 cut(s) 104, 324, 560, 678, 708
MspR9I CCNGG 7 cut(s) 104, 105, 324, 490, 560, 661, 709
Mva1269I GAATGC 1 cut(s) 637
MvaI CCWGG 2 cut(s) 490, 661
NciI CCSGG 5 cut(s) 104, 105, 324, 560, 709
NdeI CATATG 1 cut(s) 22
NdeII GATC 5 cut(s) 232, 493, 685, 720, 909
NlaIII CATG 5 cut(s) 398, 444, 510, 645, 650
NlaIV GGNNCC 4 cut(s) 101, 418, 495, 671
NmuCI GTSAC 4 cut(s) 197, 341, 627, 833
PagI TCATGA 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 744
PctI GAATGC 1 cut(s) 637
PflFI GACNNNGTC 1 cut(s) 581
Ple19I CGATCG 1 cut(s) 912
PleI GAGTC 3 cut(s) 738, 870, 913
PpsI GAGTC 3 cut(s) 738, 870, 913
PsiI TTATAA 2 cut(s) 456, 852
Psp6I CCWGG 2 cut(s) 488, 659
PspGI CCWGG 2 cut(s) 488, 659
PspN4I GGNNCC 4 cut(s) 101, 418, 495, 671
PspPI GGNCC 4 cut(s) 417, 431, 562, 781
PstI CTGCAG 1 cut(s) 122
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 1 cut(s) 493
PsyI GACNNNGTC 1 cut(s) 581
PvuI CGATCG 1 cut(s) 912
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 4 cut(s) 8, 718, 806, 883
RsaNI GTAC 4 cut(s) 7, 717, 805, 882
RseI CAYNNNNRTG 1 cut(s) 439
Rsr2I CGGWCCG 1 cut(s) 781
RsrII CGGWCCG 1 cut(s) 781
SaqAI TTAA 2 cut(s) 45, 243
Sau3AI GATC 5 cut(s) 232, 493, 685, 720, 909
Sau96I GGNCC 4 cut(s) 417, 431, 562, 781
ScaI AGTACT 1 cut(s) 883
SchI GAGTC 3 cut(s) 738, 870, 914
ScrFI CCNGG 7 cut(s) 104, 105, 324, 490, 560, 661, 709
SduI GDGCHC 1 cut(s) 104
SfaNI GCATC 2 cut(s) 256, 283
SfcI CTRYAG 1 cut(s) 118
SinI GGWCC 4 cut(s) 417, 431, 562, 781
SmaI CCCGGG 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 439
SmlI CTYRAG 1 cut(s) 898
SmoI CTYRAG 1 cut(s) 898
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 2 cut(s) 240, 499
SsiI CCGC 9 cut(s) 159, 183, 186, 189, 192, 420, 695, 779, 784
SspMI CTAG 3 cut(s) 53, 212, 402
StyD4I CCNGG 7 cut(s) 102, 103, 322, 488, 558, 659, 707
StyI CCWWGG 2 cut(s) 52, 312
TaaI ACNGT 5 cut(s) 167, 485, 740, 809, 848
TaqI TCGA 4 cut(s) 250, 747, 908, 912
TasI AATT 2 cut(s) 240, 499
TatI WGTACW 2 cut(s) 6, 881
TauI GCSGC 5 cut(s) 162, 186, 189, 192, 195
Tru1I TTAA 2 cut(s) 45, 243
Tru9I TTAA 2 cut(s) 45, 243
TscAI CASTG 2 cut(s) 202, 352
TseFI GTSAC 4 cut(s) 197, 341, 627, 833
TseI GCWGC 6 cut(s) 117, 120, 305, 308, 371, 512
Tsp45I GTSAC 4 cut(s) 197, 341, 627, 833
TspDTI ATGAA 4 cut(s) 411, 429, 630, 882
TspMI CCCGGG 1 cut(s) 103
TspRI CASTG 2 cut(s) 202, 352
Tth111I GACNNNGTC 1 cut(s) 581
VpaK11BI GGWCC 4 cut(s) 417, 431, 562, 781
XmaI CCCGGG 1 cut(s) 103
XmaJI CCTAGG 1 cut(s) 52
XspI CTAG 3 cut(s) 53, 212, 402
ZrmI AGTACT 1 cut(s) 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.