FvH4_1g10643

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000495
Physical Location & Seq
Forward (+)
5830126 .. 5831442
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10643.t1

Sequence Viewer

Length: 948 bp
ATGAAGTTTCATACTCTTATCATCTTCTCCCTGACTTTGGTGATTGGGGCATCGGCAGAGCAATGTGGGAGGCAAGCCGGAGGGGCAACGTGTCCAAATCGGCTCTGTTGCAGCCAATTTGGGTATTGTGGCAACACAGGCGAATACTGTGGAACTGGTTGCCAAAGCCAATGTAGCTCTGGAGGTGGTGGCTCAACCCCGACACCAACCCCAAGTGGTGGTGATGTTAGCAGTATCATTAGCGCTTCTCTCTTTGATCAAATGCTCAAGTACCGAAACGATGGCCGGTGCAAAAGTAACGGGTTCTATAAGTATGATGCTTTCATTACTGCTGCCCGATCCTTCAATGGGTTTGGTACTACTGGAGATGTTGCTACACGCAAGAAGGAAATAGCTGCTTTCTTGGGTCAAACGTCACATGAGACTACTGGAGGATGGCCAACTGCACCAGATGGCCCTTATGCTTGGGGATATTGCTTTATCAGGGAACTCAACCAGGCTGACTATTGCACTCCATCAGCCCAGTATCCATGCGCTCCCGGCAGAAAATATTACGGCCGAGGACCTATTCAACTTACTCACAACTACAACTACGCTCAAGCGGGTCAAGCAATCGGTGTGGATCTGATAAATAACCCGGACCTAGTGGCCACAGACCCGGTTGTATCATTCAAGACAGCAGTATGGTTCTGGATGACCCCTCAAGGAAACAAACCATCAAGCCACGACGTTATCATCGGACGTTGGAACCCATCTAGTGCAGACAGAGCGGCGGGTCGGGTTCCCGGGTATGGTGTGATCACTAACATAGTGAATGGCGCACTTGAGTGTGGACGTGGTGCAGATGCTAGGGTGGCGGATCGGATCGGGTTCTACAGGAGGTACTGTGACATATTTGGAGTCAGCCCTGGGGATAACTTGGATTGTTATAACCAAAGATCGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

316

Amino Acids

33.82

Weight (kDa)

8.31

Isoelectric Point (pI)

31.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chitin_bind_1 PF00187 21 - 58 6.3e-14 Chitin recognition protein
Glyco_hydro_19 PF00182 79 - 309 4.6e-132 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 930
AccB7I CCANNNNNTGG 1 cut(s) 218
AccBSI CCGCTC 1 cut(s) 770
AciI CCGC 4 cut(s) 602, 770, 773, 857
AclWI GGATC 4 cut(s) 333, 630, 867, 872
AcoI YGGCCR 4 cut(s) 283, 437, 556, 648
AfaI GTAC 3 cut(s) 272, 358, 884
AfeI AGCGCT 1 cut(s) 244
AfiI CCNNNNNNNGG 4 cut(s) 37, 218, 348, 791
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 3 cut(s) 346, 572, 673
AjiI CACGTC 1 cut(s) 836
AjnI CCWGG 2 cut(s) 495, 907
AleI CACNNNNGTG 1 cut(s) 826
AluBI AGCT 2 cut(s) 177, 395
AluI AGCT 2 cut(s) 177, 395
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 4 cut(s) 333, 630, 867, 872
Ama87I CYCGRG 1 cut(s) 785
Aor51HI AGCGCT 1 cut(s) 244
AoxI GGCC 5 cut(s) 283, 437, 454, 556, 648
ApeKI GCWGC 3 cut(s) 111, 332, 395
AspLEI GCGC 3 cut(s) 245, 536, 821
AspS9I GGNCC 3 cut(s) 455, 563, 640
AsuC2I CCSGG 5 cut(s) 540, 638, 659, 786, 787
AsuHPI GGTGA 2 cut(s) 52, 233
AvaI CYCGRG 1 cut(s) 785
AvaII GGWCC 2 cut(s) 563, 640
BalI TGGCCA 2 cut(s) 439, 650
BbvI GCAGC 3 cut(s) 123, 319, 382
BccI CCATC 6 cut(s) 275, 429, 446, 523, 724, 760
BceAI ACGGC 1 cut(s) 571
BciT130I CCWGG 2 cut(s) 497, 909
BciVI GTATCC 1 cut(s) 537
BclI TGATCA 2 cut(s) 256, 798
BcnI CCSGG 5 cut(s) 540, 638, 659, 786, 787
BcoDI GTCTC 1 cut(s) 416
BfaI CTAG 3 cut(s) 644, 756, 849
BfmI CTRYAG 1 cut(s) 874
BfoI RGCGCY 1 cut(s) 246
BfuI GTATCC 1 cut(s) 537
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 4 cut(s) 112, 333, 396, 771
BlsI GCNGC 4 cut(s) 113, 334, 397, 772
Bme1390I CCNGG 7 cut(s) 497, 540, 638, 659, 786, 787, 909
Bme18I GGWCC 2 cut(s) 563, 640
BmeT110I CYCGRG 1 cut(s) 785
BmgBI CACGTC 1 cut(s) 836
BmgT120I GGNCC 3 cut(s) 455, 563, 640
BmiI GGNNCC 2 cut(s) 749, 783
BmrFI CCNGG 7 cut(s) 497, 540, 638, 659, 786, 787, 909
BmrI ACTGGG 1 cut(s) 517
BmsI GCATC 3 cut(s) 59, 307, 835
BmuI ACTGGG 1 cut(s) 517
BpmI CTGGAG 3 cut(s) 201, 384, 450
BpuEI CTTGAG 4 cut(s) 251, 582, 687, 845
BpuMI CCSGG 5 cut(s) 540, 638, 659, 786, 787
BsaJI CCNNGG 4 cut(s) 559, 785, 907, 908
BsaXI ACNNNNNCTCC 2 cut(s) 871, 901
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 218, 348, 791
Bse118I RCCGGY 1 cut(s) 285
Bse1I ACTGG 4 cut(s) 160, 367, 433, 523
Bse3DI GCAATG 1 cut(s) 68
BseBI CCWGG 2 cut(s) 497, 909
BseDI CCNNGG 4 cut(s) 559, 785, 907, 908
BseGI GGATG 2 cut(s) 440, 699
BseLI CCNNNNNNNGG 4 cut(s) 37, 218, 348, 791
BseMI GCAATG 1 cut(s) 68
BseNI ACTGG 4 cut(s) 160, 367, 433, 523
BseX3I CGGCCG 1 cut(s) 556
BseXI GCAGC 3 cut(s) 123, 319, 382
BsgI GTGCAG 3 cut(s) 429, 780, 861
Bsh1285I CGRYCG 1 cut(s) 559
BshFI GGCC 5 cut(s) 285, 439, 456, 558, 650
BsiEI CGRYCG 1 cut(s) 559
BsiHKCI CYCGRG 1 cut(s) 785
BsiSI CCGG 6 cut(s) 78, 286, 540, 638, 659, 786
BslI CCNNNNNNNGG 4 cut(s) 37, 218, 348, 791
BsmAI GTCTC 1 cut(s) 416
BsnI GGCC 5 cut(s) 285, 439, 456, 558, 650
BsoBI CYCGRG 1 cut(s) 785
Bsp143I GATC 7 cut(s) 256, 338, 622, 798, 859, 864, 938
BspACI CCGC 4 cut(s) 602, 770, 773, 857
BspANI GGCC 5 cut(s) 285, 439, 456, 558, 650
BspLI GGNNCC 2 cut(s) 749, 783
BspPI GGATC 4 cut(s) 333, 630, 867, 872
BsrBI CCGCTC 1 cut(s) 770
BsrDI GCAATG 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 285
BsrI ACTGG 4 cut(s) 160, 367, 433, 523
BssAI RCCGGY 1 cut(s) 285
BssECI CCNNGG 4 cut(s) 559, 785, 907, 908
BssMI GATC 7 cut(s) 256, 338, 622, 798, 859, 864, 938
Bst2UI CCWGG 2 cut(s) 497, 909
Bst4CI ACNGT 2 cut(s) 149, 887
BstC8I GCNNGC 1 cut(s) 75
BstF5I GGATG 2 cut(s) 440, 699
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 3 cut(s) 245, 536, 821
BstKTI GATC 7 cut(s) 259, 341, 625, 801, 862, 867, 941
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 7 cut(s) 256, 338, 622, 798, 859, 864, 938
BstMCI CGRYCG 1 cut(s) 559
BstMWI GCNNNNNNNGC 7 cut(s) 83, 138, 174, 540, 608, 767, 854
BstNI CCWGG 2 cut(s) 497, 909
BstSCI CCNGG 7 cut(s) 495, 538, 636, 657, 784, 785, 907
BstSFI CTRYAG 1 cut(s) 874
BstV1I GCAGC 3 cut(s) 123, 319, 382
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BstZI CGGCCG 1 cut(s) 556
BsuI GTATCC 1 cut(s) 537
BsuRI GGCC 5 cut(s) 285, 439, 456, 558, 650
BtrI CACGTC 1 cut(s) 836
BtsCI GGATG 2 cut(s) 440, 699
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 3 cut(s) 245, 536, 821
Cfr10I RCCGGY 1 cut(s) 285
Cfr13I GGNCC 3 cut(s) 455, 563, 640
Cfr9I CCCGGG 1 cut(s) 785
Csp6I GTAC 3 cut(s) 271, 357, 883
CspCI CAANNNNNGTGG 2 cut(s) 600, 635
CviAII CATG 2 cut(s) 419, 531
CviQI GTAC 3 cut(s) 271, 357, 883
DpnI GATC 7 cut(s) 258, 340, 624, 800, 861, 866, 940
DpnII GATC 7 cut(s) 256, 338, 622, 798, 859, 864, 938
EaeI YGGCCR 4 cut(s) 283, 437, 556, 648
EagI CGGCCG 1 cut(s) 556
EciI GGCGGA 1 cut(s) 872
EclXI CGGCCG 1 cut(s) 556
Eco47I GGWCC 2 cut(s) 563, 640
Eco47III AGCGCT 1 cut(s) 244
Eco52I CGGCCG 1 cut(s) 556
Eco88I CYCGRG 1 cut(s) 785
EcoO109I RGGNCCY 1 cut(s) 563
EcoRII CCWGG 2 cut(s) 495, 907
FaeI CATG 2 cut(s) 422, 534
FatI CATG 2 cut(s) 418, 530
FauI CCCGC 2 cut(s) 595, 766
FbaI TGATCA 2 cut(s) 256, 798
Fnu4HI GCNGC 4 cut(s) 112, 333, 396, 771
FokI GGATG 2 cut(s) 447, 706
Fsp4HI GCNGC 4 cut(s) 112, 333, 396, 771
FspBI CTAG 3 cut(s) 644, 756, 849
GlaI GCGC 3 cut(s) 244, 535, 820
GluI GCNGC 4 cut(s) 112, 333, 396, 771
GsuI CTGGAG 3 cut(s) 201, 384, 450
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 5 cut(s) 285, 439, 456, 558, 650
HapII CCGG 6 cut(s) 78, 286, 540, 638, 659, 786
HhaI GCGC 3 cut(s) 245, 536, 821
Hin1II CATG 2 cut(s) 422, 534
Hin6I GCGC 3 cut(s) 243, 534, 819
HinP1I GCGC 3 cut(s) 243, 534, 819
HinfI GANTC 1 cut(s) 900
HpaII CCGG 6 cut(s) 78, 286, 540, 638, 659, 786
HphI GGTGA 2 cut(s) 52, 233
Hpy166II GTNNAC 1 cut(s) 833
Hpy188I TCNGA 3 cut(s) 627, 740, 864
Hpy188III TCNNGA 3 cut(s) 180, 673, 691
Hpy8I GTNNAC 1 cut(s) 833
Hpy99I CGWCG 1 cut(s) 731
HpyAV CCTTC 2 cut(s) 352, 379
HpyCH4III ACNGT 2 cut(s) 149, 887
HpyCH4IV ACGT 5 cut(s) 89, 413, 729, 742, 835
HpyCH4V TGCA 6 cut(s) 111, 291, 446, 510, 761, 842
HpyF10VI GCNNNNNNNGC 7 cut(s) 83, 138, 174, 540, 608, 767, 854
HpySE526I ACGT 5 cut(s) 89, 413, 729, 742, 835
Hsp92II CATG 2 cut(s) 422, 534
HspAI GCGC 3 cut(s) 243, 534, 819
Ksp22I TGATCA 2 cut(s) 256, 798
Kzo9I GATC 7 cut(s) 256, 338, 622, 798, 859, 864, 938
LmnI GCTCC 1 cut(s) 541
Lsp1109I GCAGC 3 cut(s) 123, 319, 382
LweI GCATC 3 cut(s) 59, 307, 835
MaeI CTAG 3 cut(s) 644, 756, 849
MaeII ACGT 5 cut(s) 89, 413, 729, 742, 835
MaeIII GTNAC 3 cut(s) 296, 414, 887
MalI GATC 7 cut(s) 258, 340, 624, 800, 861, 866, 940
MbiI CCGCTC 1 cut(s) 770
MboI GATC 7 cut(s) 256, 338, 622, 798, 859, 864, 938
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 622
MlsI TGGCCA 2 cut(s) 439, 650
MluCI AATT 1 cut(s) 116
MluNI TGGCCA 2 cut(s) 439, 650
MlyI GAGTC 1 cut(s) 909
MmeI TCCRAC 1 cut(s) 725
MnlI CCTC 7 cut(s) 63, 74, 176, 425, 554, 711, 873
Mox20I TGGCCA 2 cut(s) 439, 650
MscI TGGCCA 2 cut(s) 439, 650
MslI CAYNNNNRTG 1 cut(s) 826
Msp20I TGGCCA 2 cut(s) 439, 650
MspI CCGG 6 cut(s) 78, 286, 540, 638, 659, 786
MspR9I CCNGG 7 cut(s) 497, 540, 638, 659, 786, 787, 909
MvaI CCWGG 2 cut(s) 497, 909
MwoI GCNNNNNNNGC 7 cut(s) 83, 138, 174, 540, 608, 767, 854
NciI CCSGG 5 cut(s) 540, 638, 659, 786, 787
NdeII GATC 7 cut(s) 256, 338, 622, 798, 859, 864, 938
NlaIII CATG 2 cut(s) 422, 534
NlaIV GGNNCC 2 cut(s) 749, 783
NmeAIII GCCGAG 1 cut(s) 584
NmuCI GTSAC 2 cut(s) 414, 887
OliI CACNNNNGTG 1 cut(s) 826
PasI CCCWGGG 1 cut(s) 908
PflMI CCANNNNNTGG 1 cut(s) 218
PkrI GCNGC 4 cut(s) 113, 334, 397, 772
PleI GAGTC 1 cut(s) 908
PpsI GAGTC 1 cut(s) 908
PpuMI RGGWCCY 1 cut(s) 563
PsiI TTATAA 1 cut(s) 930
Psp5II RGGWCCY 1 cut(s) 563
Psp6I CCWGG 2 cut(s) 495, 907
PspGI CCWGG 2 cut(s) 495, 907
PspN4I GGNNCC 2 cut(s) 749, 783
PspPI GGNCC 3 cut(s) 455, 563, 640
PspPPI RGGWCCY 1 cut(s) 563
PsuI RGATCY 1 cut(s) 622
RsaI GTAC 3 cut(s) 272, 358, 884
RsaNI GTAC 3 cut(s) 271, 357, 883
RseI CAYNNNNRTG 1 cut(s) 826
SatI GCNGC 4 cut(s) 112, 333, 396, 771
Sau3AI GATC 7 cut(s) 256, 338, 622, 798, 859, 864, 938
Sau96I GGNCC 3 cut(s) 455, 563, 640
SchI GAGTC 1 cut(s) 909
ScrFI CCNGG 7 cut(s) 497, 540, 638, 659, 786, 787, 909
SfaNI GCATC 3 cut(s) 59, 307, 835
SfcI CTRYAG 1 cut(s) 874
SinI GGWCC 2 cut(s) 563, 640
SmaI CCCGGG 1 cut(s) 787
SmiMI CAYNNNNRTG 1 cut(s) 826
SmlI CTYRAG 4 cut(s) 266, 597, 702, 824
SmoI CTYRAG 4 cut(s) 266, 597, 702, 824
Sse9I AATT 1 cut(s) 116
SsiI CCGC 4 cut(s) 602, 770, 773, 857
SspI AATATT 1 cut(s) 551
SspMI CTAG 3 cut(s) 644, 756, 849
StyD4I CCNGG 7 cut(s) 495, 538, 636, 657, 784, 785, 907
TaaI ACNGT 2 cut(s) 149, 887
TaiI ACGT 5 cut(s) 92, 416, 732, 745, 838
TasI AATT 1 cut(s) 116
TauI GCSGC 1 cut(s) 773
TseFI GTSAC 2 cut(s) 414, 887
TseI GCWGC 3 cut(s) 111, 332, 395
Tsp45I GTSAC 2 cut(s) 414, 887
TspDTI ATGAA 2 cut(s) 17, 313
TspMI CCCGGG 1 cut(s) 785
Van91I CCANNNNNTGG 1 cut(s) 218
VpaK11BI GGWCC 2 cut(s) 563, 640
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
XmaI CCCGGG 1 cut(s) 785
XspI CTAG 3 cut(s) 644, 756, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.