RLG00000016737

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000495
Physical Location & Seq
Forward (+)
9565282 .. 9566602
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016737

Sequence Viewer

Length: 924 bp
ATGAAAATGAAGCTACACTCCTTTATCATCGTCTCCCTCACTTTGTTGCCAGGTATCTCCGCAGAACAATGTGGTAGACAAGCCGGTGGAGCTACCTGCCCGAATGGGCTATGTTGTAGCGAGTTTGGCTGGTGTGGCAGCACAGCCGATTACTGTACTAAAAACTGCCAAAGCCAATGTAGTTCAGGCGGCGGCTCAACCCCTTCTCCGACTCCAGGTGGCGGCGGCGGCGATGTTGCCGGCCTCGTTAGCACCTCTCTCTTCGATCAAATGCTCAAGTATCGCAACGATGCACGGTGCAAGGGCAACGGTTTCTACAAGTATGATGCTTTCATTGCTGCTGCTCGATCATTCCCTGGGTTTGGCACCACTGGAGATGATGCAACGCGCAAGAAGGAGCTCGCTGCTTTCTTAGCTCAAACCTCTCATGAGACCACTGTGCGTGTCATTAATTATATGGTTGATTATGTTGGTGGATGGCCAAGTGCACCAGATGGTCCTTATGCATGGGGTTATTGCTTTGTCAATGAAAACGACCAGGATGTGCATTGTACAAACCCAGAATATCCATGTGCTCCTGGCAAGAAATACTACGGTCGAGGACCCATTCAACTCACCCACAATTACAACTATGATCAAGCGGGTAAAGCAATCGGAGCGGATCTAATAAACAATCCGAACTTAGTGGCCACAGACCCGGTTGTATCATTCAAGACAGCAATATGGCTTTGGATGACTCCACAATCAAACAAACCATCAAGCCACGACGTCATTACCGGCCGTTGGAACCCATCTGATGCTGATAGATCCGCGGGTCGGGTCCCTGGATATGGTGTGATTACTAACATCATCAATGGTGGACTTGAATGTGGGCATGGTCAAGATGATAAGGTGGCGGATAGGATCGGGTTCTATACGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

308

Amino Acids

32.91

Weight (kDa)

6.57

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chitin_bind_1 PF00187 23 - 60 2.2e-14 Chitin recognition protein
Glyco_hydro_19 PF00182 82 - 307 2.7e-113 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 771
Acc36I ACCTGC 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 659
AccI GTMKAC 1 cut(s) 76
AccII CGCG 2 cut(s) 388, 812
AclWI GGATC 3 cut(s) 669, 801, 911
AcoI YGGCCR 3 cut(s) 479, 687, 778
AcyI GRCGYC 1 cut(s) 768
AfaI GTAC 2 cut(s) 157, 553
AfiI CCNNNNNNNGG 6 cut(s) 215, 221, 362, 783, 816, 830
AgsI TTSAA 3 cut(s) 611, 712, 866
AjnI CCWGG 6 cut(s) 49, 214, 355, 537, 577, 823
AluBI AGCT 4 cut(s) 13, 92, 400, 416
AluI AGCT 4 cut(s) 13, 92, 400, 416
Alw21I GWGCWC 3 cut(s) 402, 490, 577
Alw26I GTCTC 2 cut(s) 37, 425
Alw44I GTGCAC 1 cut(s) 486
AlwI GGATC 3 cut(s) 669, 801, 911
AoxI GGCC 4 cut(s) 241, 479, 687, 778
ApaLI GTGCAC 1 cut(s) 486
ApeKI GCWGC 4 cut(s) 138, 338, 341, 404
AseI ATTAAT 1 cut(s) 450
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 3 cut(s) 497, 602, 820
AsuC2I CCSGG 1 cut(s) 698
AsuHPI GGTGA 1 cut(s) 607
AvaII GGWCC 3 cut(s) 497, 602, 820
BaeGI GKGCMC 1 cut(s) 490
BalI TGGCCA 2 cut(s) 481, 689
BanI GGYRCC 1 cut(s) 365
BanII GRGCYC 1 cut(s) 402
Bbv12I GWGCWC 3 cut(s) 402, 490, 577
BbvI GCAGC 4 cut(s) 150, 325, 328, 391
BccI CCATC 4 cut(s) 471, 488, 763, 799
BceAI ACGGC 1 cut(s) 765
BciT130I CCWGG 6 cut(s) 51, 216, 357, 539, 579, 825
BclI TGATCA 1 cut(s) 634
BcnI CCSGG 1 cut(s) 698
BcoDI GTCTC 2 cut(s) 37, 425
BfuAI ACCTGC 1 cut(s) 104
BisI GCNGC 9 cut(s) 139, 190, 193, 223, 226, 229, 339, 342, 405
BlsI GCNGC 9 cut(s) 140, 191, 194, 224, 227, 230, 340, 343, 406
Bme1390I CCNGG 7 cut(s) 51, 216, 357, 539, 579, 698, 825
Bme18I GGWCC 3 cut(s) 497, 602, 820
BmgT120I GGNCC 3 cut(s) 497, 602, 820
BmiI GGNNCC 5 cut(s) 367, 604, 788, 821, 822
BmrFI CCNGG 7 cut(s) 51, 216, 357, 539, 579, 698, 825
BmsI GCATC 4 cut(s) 280, 316, 370, 787
BpmI CTGGAG 2 cut(s) 198, 393
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 698
BsaHI GRCGYC 1 cut(s) 768
BsaI GGTCTC 1 cut(s) 425
BsaJI CCNNGG 4 cut(s) 355, 356, 810, 823
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 6 cut(s) 215, 221, 362, 783, 816, 830
Bse118I RCCGGY 3 cut(s) 83, 239, 776
Bse1I ACTGG 1 cut(s) 376
Bse3DI GCAATG 1 cut(s) 333
BseBI CCWGG 6 cut(s) 51, 216, 357, 539, 579, 825
BseDI CCNNGG 4 cut(s) 355, 356, 810, 823
BseGI GGATG 3 cut(s) 482, 547, 738
BseLI CCNNNNNNNGG 6 cut(s) 215, 221, 362, 783, 816, 830
BseMI GCAATG 1 cut(s) 333
BseNI ACTGG 1 cut(s) 376
BseSI GKGCMC 1 cut(s) 490
BseX3I CGGCCG 1 cut(s) 778
BseXI GCAGC 4 cut(s) 150, 325, 328, 391
Bsh1236I CGCG 2 cut(s) 388, 812
Bsh1285I CGRYCG 2 cut(s) 598, 781
BshFI GGCC 4 cut(s) 243, 481, 689, 780
BshNI GGYRCC 1 cut(s) 365
BsiEI CGRYCG 2 cut(s) 598, 781
BsiHKAI GWGCWC 3 cut(s) 402, 490, 577
BsiSI CCGG 4 cut(s) 84, 240, 698, 777
BslFI GGGAC 1 cut(s) 806
BslI CCNNNNNNNGG 6 cut(s) 215, 221, 362, 783, 816, 830
BsmAI GTCTC 2 cut(s) 37, 425
BsmBI CGTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 806
BsnI GGCC 4 cut(s) 243, 481, 689, 780
Bso31I GGTCTC 1 cut(s) 425
Bsp1286I GDGCHC 3 cut(s) 402, 490, 577
Bsp1407I TGTACA 1 cut(s) 551
Bsp143I GATC 6 cut(s) 265, 347, 634, 661, 806, 903
BspANI GGCC 4 cut(s) 243, 481, 689, 780
BspFNI CGCG 2 cut(s) 388, 812
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 5 cut(s) 367, 604, 788, 821, 822
BspMI ACCTGC 1 cut(s) 104
BspPI GGATC 3 cut(s) 669, 801, 911
BspT107I GGYRCC 1 cut(s) 365
BspTNI GGTCTC 1 cut(s) 425
BsrBI CCGCTC 1 cut(s) 659
BsrDI GCAATG 1 cut(s) 333
BsrFI RCCGGY 3 cut(s) 83, 239, 776
BsrGI TGTACA 1 cut(s) 551
BsrI ACTGG 1 cut(s) 376
BssAI RCCGGY 3 cut(s) 83, 239, 776
BssECI CCNNGG 4 cut(s) 355, 356, 810, 823
BssMI GATC 6 cut(s) 265, 347, 634, 661, 806, 903
BssNI GRCGYC 1 cut(s) 768
Bst2UI CCWGG 6 cut(s) 51, 216, 357, 539, 579, 825
Bst4CI ACNGT 5 cut(s) 155, 297, 311, 439, 596
Bst6I CTCTTC 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 768
BstAUI TGTACA 1 cut(s) 551
BstC8I GCNNGC 2 cut(s) 241, 402
BstDEI CTNAG 2 cut(s) 412, 682
BstDSI CCRYGG 1 cut(s) 810
BstF5I GGATG 3 cut(s) 482, 547, 738
BstFNI CGCG 2 cut(s) 388, 812
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 6 cut(s) 268, 350, 637, 664, 809, 906
BstMAI GTCTC 2 cut(s) 37, 425
BstMBI GATC 6 cut(s) 265, 347, 634, 661, 806, 903
BstMCI CGRYCG 2 cut(s) 598, 781
BstMWI GCNNNNNNNGC 9 cut(s) 89, 126, 135, 228, 249, 335, 413, 647, 656
BstNI CCWGG 6 cut(s) 51, 216, 357, 539, 579, 825
BstSCI CCNGG 7 cut(s) 49, 214, 355, 537, 577, 696, 823
BstSLI GKGCMC 1 cut(s) 490
BstUI CGCG 2 cut(s) 388, 812
BstV1I GCAGC 4 cut(s) 150, 325, 328, 391
BstX2I RGATCY 2 cut(s) 661, 806
BstYI RGATCY 2 cut(s) 661, 806
BstZI CGGCCG 1 cut(s) 778
BsuRI GGCC 4 cut(s) 243, 481, 689, 780
BtgI CCRYGG 1 cut(s) 810
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 3 cut(s) 482, 547, 738
BtsIMutI CAGTG 2 cut(s) 369, 435
BveI ACCTGC 1 cut(s) 104
Cac8I GCNNGC 2 cut(s) 241, 402
CciI TCATGA 1 cut(s) 427
CfoI GCGC 1 cut(s) 390
Cfr10I RCCGGY 3 cut(s) 83, 239, 776
Cfr13I GGNCC 3 cut(s) 497, 602, 820
Cfr42I CCGCGG 1 cut(s) 813
Csp6I GTAC 2 cut(s) 156, 552
CviAII CATG 4 cut(s) 428, 507, 570, 875
CviQI GTAC 2 cut(s) 156, 552
DdeI CTNAG 2 cut(s) 412, 682
DpnI GATC 6 cut(s) 267, 349, 636, 663, 808, 905
DpnII GATC 6 cut(s) 265, 347, 634, 661, 806, 903
EaeI YGGCCR 3 cut(s) 479, 687, 778
EagI CGGCCG 1 cut(s) 778
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 911
Ecl136II GAGCTC 1 cut(s) 400
EclXI CGGCCG 1 cut(s) 778
Eco24I GRGCYC 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 425
Eco47I GGWCC 3 cut(s) 497, 602, 820
Eco52I CGGCCG 1 cut(s) 778
Eco53kI GAGCTC 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 400
EcoO109I RGGNCCY 2 cut(s) 602, 820
EcoRII CCWGG 6 cut(s) 49, 214, 355, 537, 577, 823
EcoT22I ATGCAT 1 cut(s) 508
EcoT38I GRGCYC 1 cut(s) 402
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 4 cut(s) 431, 510, 573, 878
FaqI GGGAC 1 cut(s) 806
FatI CATG 4 cut(s) 427, 506, 569, 874
FauI CCCGC 2 cut(s) 634, 805
FbaI TGATCA 1 cut(s) 634
FblI GTMKAC 1 cut(s) 76
Fnu4HI GCNGC 9 cut(s) 139, 190, 193, 223, 226, 229, 339, 342, 405
FokI GGATG 3 cut(s) 489, 554, 745
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 9 cut(s) 139, 190, 193, 223, 226, 229, 339, 342, 405
GlaI GCGC 1 cut(s) 389
GluI GCNGC 9 cut(s) 139, 190, 193, 223, 226, 229, 339, 342, 405
GsuI CTGGAG 2 cut(s) 198, 393
HaeIII GGCC 4 cut(s) 243, 481, 689, 780
HapII CCGG 4 cut(s) 84, 240, 698, 777
HhaI GCGC 1 cut(s) 390
Hin1I GRCGYC 1 cut(s) 768
Hin1II CATG 4 cut(s) 431, 510, 573, 878
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HinfI GANTC 2 cut(s) 211, 736
HpaII CCGG 4 cut(s) 84, 240, 698, 777
HphI GGTGA 1 cut(s) 607
Hpy166II GTNNAC 3 cut(s) 77, 488, 860
Hpy188I TCNGA 4 cut(s) 210, 656, 678, 796
Hpy188III TCNNGA 3 cut(s) 428, 712, 881
Hpy8I GTNNAC 3 cut(s) 77, 488, 860
Hpy99I CGWCG 1 cut(s) 770
HpyAV CCTTC 2 cut(s) 213, 388
HpyCH4III ACNGT 5 cut(s) 155, 297, 311, 439, 596
HpyCH4IV ACGT 1 cut(s) 768
HpyCH4V TGCA 6 cut(s) 293, 300, 383, 488, 506, 547
HpyF10VI GCNNNNNNNGC 9 cut(s) 89, 126, 135, 228, 249, 335, 413, 647, 656
HpyF3I CTNAG 2 cut(s) 412, 682
HpySE526I ACGT 1 cut(s) 768
Hsp92I GRCGYC 1 cut(s) 768
Hsp92II CATG 4 cut(s) 431, 510, 573, 878
HspAI GCGC 1 cut(s) 388
KflI GGGWCCC 1 cut(s) 820
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 634
KspI CCGCGG 1 cut(s) 813
Kzo9I GATC 6 cut(s) 265, 347, 634, 661, 806, 903
LmnI GCTCC 4 cut(s) 89, 397, 580, 656
Lsp1109I GCAGC 4 cut(s) 150, 325, 328, 391
LweI GCATC 4 cut(s) 280, 316, 370, 787
MaeII ACGT 1 cut(s) 768
MalI GATC 6 cut(s) 267, 349, 636, 663, 808, 905
MbiI CCGCTC 1 cut(s) 659
MboI GATC 6 cut(s) 265, 347, 634, 661, 806, 903
MboII GAAGA 1 cut(s) 253
MflI RGATCY 2 cut(s) 661, 806
MhlI GDGCHC 3 cut(s) 402, 490, 577
MlsI TGGCCA 2 cut(s) 481, 689
MluCI AATT 2 cut(s) 451, 622
MluNI TGGCCA 2 cut(s) 481, 689
MlyI GAGTC 2 cut(s) 205, 730
MmeI TCCRAC 2 cut(s) 233, 764
MnlI CCTC 6 cut(s) 47, 254, 265, 433, 593, 912
Mox20I TGGCCA 2 cut(s) 481, 689
Mph1103I ATGCAT 1 cut(s) 508
MroNI GCCGGC 1 cut(s) 239
MscI TGGCCA 2 cut(s) 481, 689
MseI TTAA 1 cut(s) 450
Msp20I TGGCCA 2 cut(s) 481, 689
MspA1I CMGCKG 1 cut(s) 812
MspI CCGG 4 cut(s) 84, 240, 698, 777
MspR9I CCNGG 7 cut(s) 51, 216, 357, 539, 579, 698, 825
MvaI CCWGG 6 cut(s) 51, 216, 357, 539, 579, 825
MvnI CGCG 2 cut(s) 388, 812
MwoI GCNNNNNNNGC 9 cut(s) 89, 126, 135, 228, 249, 335, 413, 647, 656
NaeI GCCGGC 1 cut(s) 241
NciI CCSGG 1 cut(s) 698
NdeII GATC 6 cut(s) 265, 347, 634, 661, 806, 903
NgoMIV GCCGGC 1 cut(s) 239
NlaIII CATG 4 cut(s) 431, 510, 573, 878
NlaIV GGNNCC 5 cut(s) 367, 604, 788, 821, 822
NsiI ATGCAT 1 cut(s) 508
PagI TCATGA 1 cut(s) 427
PasI CCCWGGG 1 cut(s) 356
PdiI GCCGGC 1 cut(s) 241
PkrI GCNGC 9 cut(s) 140, 191, 194, 224, 227, 230, 340, 343, 406
PleI GAGTC 2 cut(s) 205, 730
PpsI GAGTC 2 cut(s) 205, 730
PpuMI RGGWCCY 2 cut(s) 602, 820
PshBI ATTAAT 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 402
Psp5II RGGWCCY 2 cut(s) 602, 820
Psp6I CCWGG 6 cut(s) 49, 214, 355, 537, 577, 823
PspGI CCWGG 6 cut(s) 49, 214, 355, 537, 577, 823
PspN4I GGNNCC 5 cut(s) 367, 604, 788, 821, 822
PspPI GGNCC 3 cut(s) 497, 602, 820
PspPPI RGGWCCY 2 cut(s) 602, 820
PsuI RGATCY 2 cut(s) 661, 806
RsaI GTAC 2 cut(s) 157, 553
RsaNI GTAC 2 cut(s) 156, 552
SacI GAGCTC 1 cut(s) 402
SacII CCGCGG 1 cut(s) 813
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 9 cut(s) 139, 190, 193, 223, 226, 229, 339, 342, 405
Sau3AI GATC 6 cut(s) 265, 347, 634, 661, 806, 903
Sau96I GGNCC 3 cut(s) 497, 602, 820
SchI GAGTC 2 cut(s) 205, 730
ScrFI CCNGG 7 cut(s) 51, 216, 357, 539, 579, 698, 825
SduI GDGCHC 3 cut(s) 402, 490, 577
SfaNI GCATC 4 cut(s) 280, 316, 370, 787
Sfr303I CCGCGG 1 cut(s) 813
SgrBI CCGCGG 1 cut(s) 813
SinI GGWCC 3 cut(s) 497, 602, 820
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 2 cut(s) 451, 622
SstI GAGCTC 1 cut(s) 402
StyD4I CCNGG 7 cut(s) 49, 214, 355, 537, 577, 696, 823
TaaI ACNGT 5 cut(s) 155, 297, 311, 439, 596
TaiI ACGT 1 cut(s) 771
TaqI TCGA 3 cut(s) 264, 346, 598
TasI AATT 2 cut(s) 451, 622
TatI WGTACW 2 cut(s) 155, 551
TauI GCSGC 5 cut(s) 192, 195, 225, 228, 231
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 2 cut(s) 376, 442
TseI GCWGC 4 cut(s) 138, 338, 341, 404
TspDTI ATGAA 4 cut(s) 17, 23, 322, 543
TspRI CASTG 2 cut(s) 376, 442
VneI GTGCAC 1 cut(s) 486
VpaK11BI GGWCC 3 cut(s) 497, 602, 820
VspI ATTAAT 1 cut(s) 450
XmiI GTMKAC 1 cut(s) 76
ZraI GACGTC 1 cut(s) 769
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.