pycom02g09370

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000495
Physical Location & Seq
Forward (+)
6447318 .. 6447755
438 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g09370.1

Sequence Viewer

Length: 390 bp
ATGGCACACTTGAAAAAATGGTCAAACAAAACCATCAGAAAACCATCAAACACTTTCACAAAAAAATATATATATAAAGAAAAAGAAATGAAGTTGCAAGTTCTCATTCTTTTGTCCCTAACTTTGTTGCTAGGAATCTCAGCAGAGCAATGTGGGAGCCAAGCCGGTGGCGCCGTGTGTCCAAATGGGCTGTGCTGTAGTCAGTATGGGTGGTGCGGCACCACATCTGACTACTGCGCCACTGGTTGCCAAAGCCAATGTGGCTCAACCCCTAATCCTACTCCAACCCCAACCCCAAGTGGTGGTGGTGGTGGTGGTGATATCAGCAGCCTCATTAGCTCGTCGGTTTTCGACCAAATGCTGAAGTATCAAAATGATCCACGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

130

Amino Acids

13.74

Weight (kDa)

8.75

Isoelectric Point (pI)

31.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chitin_bind_1 PF00187 50 - 87 7.3e-16 Chitin recognition protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 170, 218
AccB7I CCANNNNNTGG 1 cut(s) 302
AciI CCGC 1 cut(s) 216
AclWI GGATC 1 cut(s) 371
AcuI CTGAAG 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 1 cut(s) 339
AluI AGCT 1 cut(s) 339
AlwI GGATC 1 cut(s) 371
ApeKI GCWGC 2 cut(s) 327, 384
AspLEI GCGC 2 cut(s) 173, 239
AsuHPI GGTGA 1 cut(s) 329
BanI GGYRCC 2 cut(s) 170, 218
BbvI GCAGC 2 cut(s) 339, 371
BccI CCATC 2 cut(s) 41, 52
BceAI ACGGC 1 cut(s) 158
BfaI CTAG 2 cut(s) 131, 388
BfmI CTRYAG 1 cut(s) 196
BfoI RGCGCY 1 cut(s) 174
BglI GCCNNNNNGGC 1 cut(s) 261
BisI GCNGC 3 cut(s) 217, 328, 385
BlsI GCNGC 3 cut(s) 218, 329, 386
BmiI GGNNCC 3 cut(s) 158, 172, 220
BsaHI GRCGYC 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMI GCAATG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 247
BseXI GCAGC 2 cut(s) 339, 371
BshNI GGYRCC 2 cut(s) 170, 218
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 100
Bsp143I GATC 1 cut(s) 376
BspACI CCGC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 152
BspLI GGNNCC 3 cut(s) 158, 172, 220
BspPI GGATC 1 cut(s) 371
BspT107I GGYRCC 2 cut(s) 170, 218
BsrDI GCAATG 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 164
BssMI GATC 1 cut(s) 376
BssNI GRCGYC 1 cut(s) 171
BstACI GRCGYC 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 2 cut(s) 173, 239
BstKTI GATC 1 cut(s) 379
BstMBI GATC 1 cut(s) 376
BstMWI GCNNNNNNNGC 3 cut(s) 170, 261, 336
BstSFI CTRYAG 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 339, 371
BstXI CCANNNNNNTGG 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 240
CfoI GCGC 2 cut(s) 173, 239
Cfr10I RCCGGY 1 cut(s) 164
CviJI RGCY 7 cut(s) 159, 164, 190, 255, 264, 330, 339
CviKI_1 RGCY 7 cut(s) 159, 164, 190, 255, 264, 330, 339
DdeI CTNAG 1 cut(s) 139
DinI GGCGCC 1 cut(s) 172
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
Eco32I GATATC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 383
EcoRV GATATC 1 cut(s) 322
EgeI GGCGCC 1 cut(s) 172
EheI GGCGCC 1 cut(s) 172
FaiI YATR 5 cut(s) 69, 71, 73, 75, 207
FaqI GGGAC 1 cut(s) 100
Fnu4HI GCNGC 3 cut(s) 217, 328, 385
Fsp4HI GCNGC 3 cut(s) 217, 328, 385
FspBI CTAG 2 cut(s) 131, 388
GlaI GCGC 2 cut(s) 172, 238
GluI GCNGC 3 cut(s) 217, 328, 385
HaeII RGCGCY 1 cut(s) 174
HapII CCGG 1 cut(s) 165
HhaI GCGC 2 cut(s) 173, 239
Hin1I GRCGYC 1 cut(s) 171
Hin6I GCGC 2 cut(s) 171, 237
HinP1I GCGC 2 cut(s) 171, 237
HinfI GANTC 1 cut(s) 135
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 329
Hpy188I TCNGA 2 cut(s) 38, 229
Hpy99I CGWCG 1 cut(s) 346
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 261, 336
HpyF3I CTNAG 1 cut(s) 139
Hsp92I GRCGYC 1 cut(s) 171
HspAI GCGC 2 cut(s) 171, 237
KasI GGCGCC 1 cut(s) 170
Kzo9I GATC 1 cut(s) 376
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 2 cut(s) 178, 228
Lsp1109I GCAGC 2 cut(s) 339, 371
MaeI CTAG 2 cut(s) 131, 388
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
Mly113I GGCGCC 1 cut(s) 171
MmeI TCCRAC 1 cut(s) 308
MnlI CCTC 1 cut(s) 341
MspI CCGG 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 170, 261, 336
NarI GGCGCC 1 cut(s) 171
NdeII GATC 1 cut(s) 376
NlaIV GGNNCC 3 cut(s) 158, 172, 220
PfeI GAWTC 1 cut(s) 135
PflMI CCANNNNNTGG 1 cut(s) 302
PkrI GCNGC 3 cut(s) 218, 329, 386
PluTI GGCGCC 1 cut(s) 174
PspN4I GGNNCC 3 cut(s) 158, 172, 220
SatI GCNGC 3 cut(s) 217, 328, 385
Sau3AI GATC 1 cut(s) 376
SetI ASST 1 cut(s) 341
SfcI CTRYAG 1 cut(s) 196
SfoI GGCGCC 1 cut(s) 172
SgeI CNNG 9 cut(s) 22, 110, 143, 173, 177, 187, 255, 309, 352
SsiI CCGC 1 cut(s) 216
SspDI GGCGCC 1 cut(s) 170
SspMI CTAG 2 cut(s) 131, 388
TaqI TCGA 1 cut(s) 351
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 1 cut(s) 135
TscAI CASTG 1 cut(s) 247
TseI GCWGC 2 cut(s) 327, 384
TspDTI ATGAA 1 cut(s) 104
TspRI CASTG 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XspI CTAG 2 cut(s) 131, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.