RchiOBHm_Chr2g0097731

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000495
Physical Location & Seq
Forward (+)
10301442 .. 10301693
252 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47258

Sequence Viewer

Length: 252 bp
ATGACTGCTCAAGGAAACAAGCCATCAAGTCACGACGTTATCATCGGTCGTTGGAACCCATCTAGTGCGGACAGATCGGCGGGTCGGGTTCCTAGGTATGGTGTGATCACTAACATAGTCAACGGCGGAGAATGTGGGTGTGGTGCGGTTGATAGCGTGGCGGATCGGATCGGATTCTACAAGAGATACTGTGGCATGTTCCTAGTCAGCCCTGGGGATAACTTGGACTGCAATAACCAAATGTCGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

83

Amino Acids

8.9

Weight (kDa)

7.67

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 1 - 77 3.3e-35 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 68, 80, 126, 146, 161
AclWI GGATC 2 cut(s) 171, 176
AfiI CCNNNNNNNGG 1 cut(s) 98
AjnI CCWGG 1 cut(s) 211
AlwI GGATC 2 cut(s) 171, 176
AspA2I CCTAGG 1 cut(s) 92
AvrII CCTAGG 1 cut(s) 92
BccI CCATC 2 cut(s) 31, 67
BceAI ACGGC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 213
BclI TGATCA 1 cut(s) 105
BfaI CTAG 3 cut(s) 63, 93, 203
BlnI CCTAGG 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 213
BmiI GGNNCC 2 cut(s) 56, 90
BmrFI CCNGG 1 cut(s) 213
BsaJI CCNNGG 3 cut(s) 92, 211, 212
Bsc4I CCNNNNNNNGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 3 cut(s) 92, 211, 212
BseLI CCNNNNNNNGG 1 cut(s) 98
Bsh1285I CGRYCG 1 cut(s) 49
BsiEI CGRYCG 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 98
Bsp143I GATC 4 cut(s) 74, 105, 163, 168
BspACI CCGC 5 cut(s) 68, 80, 126, 146, 161
BspLI GGNNCC 2 cut(s) 56, 90
BspPI GGATC 2 cut(s) 171, 176
BssECI CCNNGG 3 cut(s) 92, 211, 212
BssMI GATC 4 cut(s) 74, 105, 163, 168
BssT1I CCWWGG 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 191
BstKTI GATC 4 cut(s) 77, 108, 166, 171
BstMBI GATC 4 cut(s) 74, 105, 163, 168
BstMCI CGRYCG 1 cut(s) 49
BstNI CCWGG 1 cut(s) 213
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 211
CviAII CATG 1 cut(s) 196
CviJI RGCY 2 cut(s) 22, 210
CviKI_1 RGCY 2 cut(s) 22, 210
DpnI GATC 4 cut(s) 76, 107, 165, 170
DpnII GATC 4 cut(s) 74, 105, 163, 168
EciI GGCGGA 2 cut(s) 141, 176
Eco130I CCWWGG 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 1 cut(s) 199
FaiI YATR 3 cut(s) 99, 116, 197
FatI CATG 1 cut(s) 195
FauI CCCGC 1 cut(s) 73
FbaI TGATCA 1 cut(s) 105
FspBI CTAG 3 cut(s) 63, 93, 203
Hin1II CATG 1 cut(s) 199
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 174
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 168, 173
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 4 cut(s) 74, 105, 163, 168
LpnPI CCDG 2 cut(s) 198, 225
MaeI CTAG 3 cut(s) 63, 93, 203
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 29
MalI GATC 4 cut(s) 76, 107, 165, 170
MboI GATC 4 cut(s) 74, 105, 163, 168
MmeI TCCRAC 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
NdeII GATC 4 cut(s) 74, 105, 163, 168
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 2 cut(s) 56, 90
NmuCI GTSAC 1 cut(s) 29
NspI RCATGY 1 cut(s) 199
PasI CCCWGGG 1 cut(s) 212
PfeI GAWTC 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 56, 90
Sau3AI GATC 4 cut(s) 74, 105, 163, 168
ScrFI CCNGG 1 cut(s) 213
SetI ASST 2 cut(s) 39, 98
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
SsiI CCGC 5 cut(s) 68, 80, 126, 146, 161
SspMI CTAG 3 cut(s) 63, 93, 203
StyD4I CCNGG 1 cut(s) 211
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 191
TaiI ACGT 1 cut(s) 39
TaqII GACCGA 1 cut(s) 35
TfiI GAWTC 1 cut(s) 174
TseFI GTSAC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 29
XceI RCATGY 1 cut(s) 199
XmaJI CCTAGG 1 cut(s) 92
XspI CTAG 3 cut(s) 63, 93, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.