Rroxscaffold_7G00188590

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000495
Physical Location & Seq
Forward (+)
28176483 .. 28184717
8235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188590.1

Sequence Viewer

Length: 495 bp
ATGAATGGAGAGAGCAGAGTCTCCCAACCTGATTTATTAAAAGAGCTGGATGATACAAAACGAAGAAGGAGGACATCGCCCATACCCCTAGCCAAAAACAGAAAAGCTATGTTAAAGAGTCACCCAAGCCCTCATGCCATGATGTCATCACCTGGAGATGGAACCCTTCCGGAGCTGATCAGTCAGCGGGTAGGTATTCCGGGTATGGTACGATCACAAATATCATCAACGTGTGGACTCGAATGTGGTAAAGGATGGGATGGGAGAGTAGCGGACCGCATTGGGTTTTTCAAGAGGTACTGTGATTTGCTTGGGATTGGTTATGGTGACAACCTTGACTTTCAGATTAAGAAGAGCGACGAGTGCGGGAGGCATAGAGACAAGGCTTTGCCTGAGAAGGAAGAGCTTTCCAAAGCCAATTATCAAGATGTCGTGGCGAAATTGGCCGAAGCTAATAGAGCAAAAACGAGGATTCGCAGTAGAAGGATGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

164

Amino Acids

18.45

Weight (kDa)

9.88

Isoelectric Point (pI)

58.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 42 - 113 8.6e-12 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 4 cut(s) 187, 272, 277, 366
AcoI YGGCCR 1 cut(s) 444
AfaI GTAC 2 cut(s) 210, 299
AfiI CCNNNNNNNGG 1 cut(s) 158
AflIII ACRYGT 1 cut(s) 230
AgsI TTSAA 1 cut(s) 292
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 5 cut(s) 46, 107, 175, 406, 452
AluI AGCT 5 cut(s) 46, 107, 175, 406, 452
Alw26I GTCTC 2 cut(s) 25, 372
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 1 cut(s) 444
AspS9I GGNCC 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 3 cut(s) 113, 141, 338
AvaII GGWCC 1 cut(s) 274
BccI CCATC 3 cut(s) 152, 249, 254
BciT130I CCWGG 1 cut(s) 153
BclI TGATCA 1 cut(s) 177
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 25, 372
BfaI CTAG 1 cut(s) 89
Bme1390I CCNGG 2 cut(s) 153, 201
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 2 cut(s) 153, 201
BpmI CTGGAG 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 158
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 1 cut(s) 153
BseGI GGATG 4 cut(s) 55, 260, 265, 492
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 384
BshFI GGCC 1 cut(s) 446
BsiSI CCGG 2 cut(s) 170, 200
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 2 cut(s) 25, 372
BsnI GGCC 1 cut(s) 446
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 2 cut(s) 177, 212
BspACI CCGC 4 cut(s) 187, 272, 277, 366
BspANI GGCC 1 cut(s) 446
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 163
BspQI GCTCTTC 2 cut(s) 347, 396
BssMI GATC 2 cut(s) 177, 212
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 302
Bst6I CTCTTC 2 cut(s) 347, 396
BstDEI CTNAG 1 cut(s) 393
BstF5I GGATG 4 cut(s) 55, 260, 265, 492
BstKTI GATC 2 cut(s) 180, 215
BstMAI GTCTC 2 cut(s) 25, 372
BstMBI GATC 2 cut(s) 177, 212
BstMWI GCNNNNNNNGC 3 cut(s) 363, 443, 458
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 2 cut(s) 151, 199
BsuRI GGCC 1 cut(s) 446
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 4 cut(s) 55, 260, 265, 492
Cfr13I GGNCC 1 cut(s) 274
CpoI CGGWCCG 1 cut(s) 274
Csp6I GTAC 2 cut(s) 209, 298
CspI CGGWCCG 1 cut(s) 274
CviAII CATG 2 cut(s) 134, 139
CviQI GTAC 2 cut(s) 209, 298
DdeI CTNAG 1 cut(s) 393
DpnI GATC 2 cut(s) 179, 214
DpnII GATC 2 cut(s) 177, 212
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 2 cut(s) 347, 396
EarI CTCTTC 2 cut(s) 347, 396
Eco47I GGWCC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 2 cut(s) 137, 142
FaiI YATR 7 cut(s) 83, 110, 135, 140, 206, 324, 375
FatI CATG 2 cut(s) 133, 138
FauI CCCGC 2 cut(s) 180, 359
FbaI TGATCA 1 cut(s) 177
FokI GGATG 3 cut(s) 62, 267, 272
FspBI CTAG 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 1 cut(s) 446
HapII CCGG 2 cut(s) 170, 200
Hin1II CATG 2 cut(s) 137, 142
HinfI GANTC 4 cut(s) 18, 118, 237, 472
HpaII CCGG 2 cut(s) 170, 200
HphI GGTGA 3 cut(s) 113, 141, 338
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 3 cut(s) 170, 292, 425
Hpy8I GTNNAC 1 cut(s) 236
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 4 cut(s) 60, 176, 391, 477
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4IV ACGT 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 3 cut(s) 363, 443, 458
HpyF3I CTNAG 1 cut(s) 393
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 2 cut(s) 137, 142
Kpn2I TCCGGA 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 2 cut(s) 177, 212
LguI GCTCTTC 2 cut(s) 347, 396
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 7 cut(s) 32, 42, 138, 165, 183, 213, 405
MaeI CTAG 1 cut(s) 89
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 2 cut(s) 119, 326
MalI GATC 2 cut(s) 179, 214
MboI GATC 2 cut(s) 177, 212
MboII GAAGA 3 cut(s) 75, 364, 413
MluCI AATT 2 cut(s) 418, 440
MlyI GAGTC 3 cut(s) 27, 127, 231
MnlI CCTC 5 cut(s) 63, 141, 288, 363, 462
MroI TCCGGA 1 cut(s) 169
MseI TTAA 3 cut(s) 38, 113, 348
MslI CAYNNNNRTG 1 cut(s) 229
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 2 cut(s) 170, 200
MspR9I CCNGG 2 cut(s) 153, 201
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 3 cut(s) 363, 443, 458
NciI CCSGG 1 cut(s) 201
NdeII GATC 2 cut(s) 177, 212
NlaIII CATG 2 cut(s) 137, 142
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 2 cut(s) 119, 326
PciSI GCTCTTC 2 cut(s) 347, 396
PfeI GAWTC 1 cut(s) 472
PleI GAGTC 3 cut(s) 26, 126, 231
PpsI GAGTC 3 cut(s) 26, 126, 231
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 274
RsaI GTAC 2 cut(s) 210, 299
RsaNI GTAC 2 cut(s) 209, 298
RseI CAYNNNNRTG 1 cut(s) 229
Rsr2I CGGWCCG 1 cut(s) 274
RsrII CGGWCCG 1 cut(s) 274
SapI GCTCTTC 2 cut(s) 347, 396
SaqAI TTAA 3 cut(s) 38, 113, 348
Sau3AI GATC 2 cut(s) 177, 212
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 3 cut(s) 27, 127, 231
ScrFI CCNGG 2 cut(s) 153, 201
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 229
Sse9I AATT 2 cut(s) 418, 440
SsiI CCGC 4 cut(s) 187, 272, 277, 366
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 2 cut(s) 151, 199
TaaI ACNGT 1 cut(s) 302
TaiI ACGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 240
TasI AATT 2 cut(s) 418, 440
TfiI GAWTC 1 cut(s) 472
Tru1I TTAA 3 cut(s) 38, 113, 348
Tru9I TTAA 3 cut(s) 38, 113, 348
TseFI GTSAC 2 cut(s) 119, 326
Tsp45I GTSAC 2 cut(s) 119, 326
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 274
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.