Rh2DG118800

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000495
Physical Location & Seq
Forward (+)
9880467 .. 9881404
938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG118800.1

Sequence Viewer

Length: 339 bp
ATGGGCTGTGTTGTAGCCAATATACGACAGCCAATCTGTGGAACTGGTTGCCAAAGCCAATGTAGTTCTGGAGGTGGTGGGGGTGGCTCAACCCCGACCCCGACCCCAAGTGGTGGTGGTGATGTTAGCAGTATAATTAGCGCATCTTTTTCTGATCAAATGCTCAGGTACCGAAATGATGGTCGGTGCCCAAGTAATGGGTTTTATAAGTATGACGCCTTCATTGCTGCTGCCCGATCCTTTAATGGGTTTGGCCCAACTGGAGATGTTGCTACAGGCAAGAAGGAACTTGCTGCTTTCGTGGGTCAAACGTCACATGAGACAACCGGTCAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

112

Amino Acids

11.39

Weight (kDa)

7.61

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 45 - 111 5.7e-26 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 207
Acc65I GGTACC 1 cut(s) 168
AccB1I GGYRCC 2 cut(s) 168, 186
AccB7I CCANNNNNTGG 3 cut(s) 38, 113, 197
AclWI GGATC 1 cut(s) 231
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 2 cut(s) 170, 335
AfiI CCNNNNNNNGG 4 cut(s) 38, 113, 197, 246
AgeI ACCGGT 1 cut(s) 326
AhdI GACNNNNNGTC 1 cut(s) 327
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 1 cut(s) 231
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 3 cut(s) 227, 230, 293
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AsiGI ACCGGT 1 cut(s) 326
Asp718I GGTACC 1 cut(s) 168
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 191
BanI GGYRCC 2 cut(s) 168, 186
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
BbvI GCAGC 3 cut(s) 214, 217, 280
BccI CCATC 1 cut(s) 173
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 314
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 3 cut(s) 228, 231, 294
BlsI GCNGC 3 cut(s) 229, 232, 295
BmcAI AGTACT 1 cut(s) 335
BmeRI GACNNNNNGTC 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 170, 188
BmsI GCATC 1 cut(s) 152
BpmI CTGGAG 2 cut(s) 90, 282
Bpu10I CCTNAGC 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 216
BsaWI WCCGGW 1 cut(s) 326
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 113, 197, 246
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 49, 265
Bse3DI GCAATG 1 cut(s) 222
BseLI CCNNNNNNNGG 4 cut(s) 38, 113, 197, 246
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 178
BseNI ACTGG 2 cut(s) 49, 265
BseSI GKGCMC 1 cut(s) 191
BseXI GCAGC 3 cut(s) 214, 217, 280
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 2 cut(s) 168, 186
BshTI ACCGGT 1 cut(s) 326
BsiSI CCGG 1 cut(s) 327
BslI CCNNNNNNNGG 4 cut(s) 38, 113, 197, 246
BsmAI GTCTC 1 cut(s) 314
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 2 cut(s) 154, 236
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 170, 188
BspPI GGATC 1 cut(s) 231
BspT107I GGYRCC 2 cut(s) 168, 186
BsrDI GCAATG 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 2 cut(s) 49, 265
BssAI RCCGGY 1 cut(s) 326
BssMI GATC 2 cut(s) 154, 236
BssNI GRCGYC 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 164
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 2 cut(s) 157, 239
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 2 cut(s) 154, 236
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 1 cut(s) 191
BstV1I GCAGC 3 cut(s) 214, 217, 280
BsuRI GGCC 1 cut(s) 255
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 254
CseI GACGC 1 cut(s) 224
Csp6I GTAC 2 cut(s) 169, 334
CspAI ACCGGT 1 cut(s) 326
CviAII CATG 1 cut(s) 317
CviJI RGCY 6 cut(s) 6, 17, 31, 57, 87, 255
CviKI_1 RGCY 6 cut(s) 6, 17, 31, 57, 87, 255
CviQI GTAC 2 cut(s) 169, 334
DdeI CTNAG 1 cut(s) 164
DpnI GATC 2 cut(s) 156, 238
DpnII GATC 2 cut(s) 154, 236
DriI GACNNNNNGTC 1 cut(s) 327
Eam1105I GACNNNNNGTC 1 cut(s) 327
FaeI CATG 1 cut(s) 320
FaiI YATR 5 cut(s) 23, 134, 207, 213, 318
FatI CATG 1 cut(s) 316
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 228, 231, 294
Fsp4HI GCNGC 3 cut(s) 228, 231, 294
GlaI GCGC 1 cut(s) 142
GluI GCNGC 3 cut(s) 228, 231, 294
GsuI CTGGAG 2 cut(s) 90, 282
HaeIII GGCC 1 cut(s) 255
HapII CCGG 1 cut(s) 327
HgaI GACGC 1 cut(s) 224
HhaI GCGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 1 cut(s) 320
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HpaII CCGG 1 cut(s) 327
HphI GGTGA 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 69
HpyAV CCTTC 2 cut(s) 229, 277
HpyCH4IV ACGT 1 cut(s) 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 311
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 1 cut(s) 320
HspAI GCGC 1 cut(s) 141
KpnI GGTACC 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 2 cut(s) 154, 236
LpnPI CCDG 5 cut(s) 30, 54, 151, 246, 261
Lsp1109I GCAGC 3 cut(s) 214, 217, 280
LweI GCATC 1 cut(s) 152
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 312
MalI GATC 2 cut(s) 156, 238
MboI GATC 2 cut(s) 154, 236
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 1 cut(s) 135
MnlI CCTC 1 cut(s) 65
MseI TTAA 1 cut(s) 243
MspI CCGG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 2 cut(s) 154, 236
NlaIII CATG 1 cut(s) 320
NlaIV GGNNCC 2 cut(s) 170, 188
NmuCI GTSAC 1 cut(s) 312
PflMI CCANNNNNTGG 3 cut(s) 38, 113, 197
PinAI ACCGGT 1 cut(s) 326
PkrI GCNGC 3 cut(s) 229, 232, 295
PsiI TTATAA 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 170, 188
PspPI GGNCC 1 cut(s) 254
RsaI GTAC 2 cut(s) 170, 335
RsaNI GTAC 2 cut(s) 169, 334
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 3 cut(s) 228, 231, 294
Sau3AI GATC 2 cut(s) 154, 236
Sau96I GGNCC 1 cut(s) 254
ScaI AGTACT 1 cut(s) 335
SduI GDGCHC 1 cut(s) 191
SetI ASST 3 cut(s) 76, 170, 314
SfaNI GCATC 1 cut(s) 152
SfcI CTRYAG 1 cut(s) 273
Sse9I AATT 1 cut(s) 135
TaiI ACGT 1 cut(s) 314
TasI AATT 1 cut(s) 135
TatI WGTACW 1 cut(s) 333
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TseFI GTSAC 1 cut(s) 312
TseI GCWGC 3 cut(s) 227, 230, 293
Tsp45I GTSAC 1 cut(s) 312
TspDTI ATGAA 1 cut(s) 211
Van91I CCANNNNNTGG 3 cut(s) 38, 113, 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
ZrmI AGTACT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.