pycom02g09390

Endochitinase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
6456012 .. 6456269
258 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g09390.1

Sequence Viewer

Length: 258 bp
ATGACTCCACAGGGAAACAAGCCATCAAGCCATGATGTCATCACTGGTAGGTGGAGTCCATCTAGTGCAGACAGATCAGCGGGTCGGGTTCCCGGGTATGGAGTGATCACCAACATCATCAACGGAGGGATTGAATGCGGGAAGGGTCAGGATGCTAGGGTTGCTAGTCGCATCGGGTTCTACAGAAGGTACTGTCAGATATTGGGAGTGAATCCGGGGGACAACTTGGATTGTTACAATCAAAGGCCTTTTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

86

Amino Acids

9.19

Weight (kDa)

9.3

Isoelectric Point (pI)

63.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 1 - 78 2.1e-43 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 80, 138
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 134
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 1 cut(s) 245
AsuC2I CCSGG 3 cut(s) 93, 94, 216
AsuHPI GGTGA 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 92
BccI CCATC 2 cut(s) 31, 67
BclI TGATCA 1 cut(s) 105
BcnI CCSGG 3 cut(s) 93, 94, 216
BfaI CTAG 3 cut(s) 63, 156, 165
BfmI CTRYAG 1 cut(s) 181
Bme1390I CCNGG 3 cut(s) 93, 94, 216
BmeT110I CYCGRG 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 3 cut(s) 93, 94, 216
BmsI GCATC 2 cut(s) 142, 180
BpuMI CCSGG 3 cut(s) 93, 94, 216
BsaJI CCNNGG 2 cut(s) 92, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 49
BseDI CCNNGG 2 cut(s) 92, 215
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 49
BsgI GTGCAG 1 cut(s) 87
BshFI GGCC 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 2 cut(s) 93, 215
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 233
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 1 cut(s) 247
BsoBI CYCGRG 1 cut(s) 92
Bsp143I GATC 2 cut(s) 74, 105
BspACI CCGC 2 cut(s) 80, 138
BspANI GGCC 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 90
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 2 cut(s) 92, 215
BssMI GATC 2 cut(s) 74, 105
Bst4CI ACNGT 1 cut(s) 194
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 2 cut(s) 77, 108
BstMBI GATC 2 cut(s) 74, 105
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstSCI CCNGG 3 cut(s) 91, 92, 214
BstSFI CTRYAG 1 cut(s) 181
BsuRI GGCC 1 cut(s) 247
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 42
Cfr9I CCCGGG 1 cut(s) 92
Csp6I GTAC 1 cut(s) 190
CviAII CATG 1 cut(s) 32
CviJI RGCY 3 cut(s) 22, 30, 247
CviKI_1 RGCY 3 cut(s) 22, 30, 247
CviQI GTAC 1 cut(s) 190
DpnI GATC 2 cut(s) 76, 107
DpnII GATC 2 cut(s) 74, 105
Eco147I AGGCCT 1 cut(s) 247
Eco88I CYCGRG 1 cut(s) 92
FaeI CATG 1 cut(s) 35
FaiI YATR 2 cut(s) 33, 99
FaqI GGGAC 1 cut(s) 233
FatI CATG 1 cut(s) 31
FauI CCCGC 2 cut(s) 73, 131
FbaI TGATCA 1 cut(s) 105
FokI GGATG 1 cut(s) 164
FspBI CTAG 3 cut(s) 63, 156, 165
HaeIII GGCC 1 cut(s) 247
HapII CCGG 2 cut(s) 93, 215
Hin1II CATG 1 cut(s) 35
HinfI GANTC 3 cut(s) 4, 55, 211
HpaII CCGG 2 cut(s) 93, 215
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 198
Hpy188III TCNNGA 1 cut(s) 149
HpyAV CCTTC 2 cut(s) 136, 180
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
Hsp92II CATG 1 cut(s) 35
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 2 cut(s) 74, 105
LpnPI CCDG 4 cut(s) 30, 106, 134, 228
LweI GCATC 2 cut(s) 142, 180
MaeI CTAG 3 cut(s) 63, 156, 165
MaeIII GTNAC 1 cut(s) 233
MalI GATC 2 cut(s) 76, 107
MboI GATC 2 cut(s) 74, 105
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 2 cut(s) 93, 215
MspR9I CCNGG 3 cut(s) 93, 94, 216
Mva1269I GAATGC 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 161
NciI CCSGG 3 cut(s) 93, 94, 216
NdeII GATC 2 cut(s) 74, 105
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 1 cut(s) 90
PceI AGGCCT 1 cut(s) 247
PctI GAATGC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 211
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 90
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
Sau3AI GATC 2 cut(s) 74, 105
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 3 cut(s) 93, 94, 216
SetI ASST 2 cut(s) 53, 191
SfaNI GCATC 2 cut(s) 142, 180
SfcI CTRYAG 1 cut(s) 181
SmaI CCCGGG 1 cut(s) 94
SseBI AGGCCT 1 cut(s) 247
SsiI CCGC 2 cut(s) 80, 138
SspMI CTAG 3 cut(s) 63, 156, 165
StuI AGGCCT 1 cut(s) 247
StyD4I CCNGG 3 cut(s) 91, 92, 214
TaaI ACNGT 1 cut(s) 194
TfiI GAWTC 1 cut(s) 211
TscAI CASTG 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 138
TspMI CCCGGG 1 cut(s) 92
TspRI CASTG 1 cut(s) 49
XmaI CCCGGG 1 cut(s) 92
XspI CTAG 3 cut(s) 63, 156, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.