Rroxscaffold_2G00140520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000495
Physical Location & Seq
Reverse (-)
78735815 .. 78744320
8506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00140520.1

Sequence Viewer

Length: 246 bp
ATGGGTATTATCGAAAAGCTGCTCAAGAATTTCTCTTGCAAAGCATTTGTTTTGTTTGTTTTGCGTATTCCTTTGGTTGGCATTGTTGATTATTGTGGTGCTGATCGATCTCGCATTACTTTGCCATCTAAATGGAAAAGCGAAGGGGCAACGACTTCCACGGGTTCTATCCCTAAACCTCGGAGGGTTAGCTACACCGATCGGACGGTGAGCGATCGCAATGACGACCTGACTCCGTGTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.01

Weight (kDa)

9.45

Isoelectric Point (pI)

22.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 77
AluBI AGCT 2 cut(s) 19, 192
AluI AGCT 2 cut(s) 19, 192
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 1 cut(s) 28
AsiSI GCGATCGC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 220
BbvI GCAGC 1 cut(s) 6
BccI CCATC 1 cut(s) 133
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 8
Bsa29I ATCGAT 1 cut(s) 106
BsaJI CCNNGG 2 cut(s) 159, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 226
BseCI ATCGAT 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 159, 179
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 1 cut(s) 226
BseXI GCAGC 1 cut(s) 6
Bsh1285I CGRYCG 2 cut(s) 202, 217
BshVI ATCGAT 1 cut(s) 106
BsiEI CGRYCG 2 cut(s) 202, 217
BslI CCNNNNNNNGG 1 cut(s) 77
Bsp143I GATC 4 cut(s) 103, 107, 199, 214
BspDI ATCGAT 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 159, 179
BssMI GATC 4 cut(s) 103, 107, 199, 214
Bst4CI ACNGT 1 cut(s) 208
BstDSI CCRYGG 1 cut(s) 159
BstKTI GATC 4 cut(s) 106, 110, 202, 217
BstMBI GATC 4 cut(s) 103, 107, 199, 214
BstMCI CGRYCG 2 cut(s) 202, 217
BstV1I GCAGC 1 cut(s) 6
BstXI CCANNNNNNTGG 1 cut(s) 132
Bsu15I ATCGAT 1 cut(s) 106
BsuTUI ATCGAT 1 cut(s) 106
BtgI CCRYGG 1 cut(s) 159
ClaI ATCGAT 1 cut(s) 106
CviJI RGCY 2 cut(s) 19, 192
CviKI_1 RGCY 2 cut(s) 19, 192
DpnI GATC 4 cut(s) 105, 109, 201, 216
DpnII GATC 4 cut(s) 103, 107, 199, 214
Fnu4HI GCNGC 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 20
HinfI GANTC 1 cut(s) 232
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 2 cut(s) 183, 204
Hpy188III TCNNGA 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 1 cut(s) 39
Kzo9I GATC 4 cut(s) 103, 107, 199, 214
LpnPI CCDG 1 cut(s) 242
Lsp1109I GCAGC 1 cut(s) 6
MalI GATC 4 cut(s) 105, 109, 201, 216
MboI GATC 4 cut(s) 103, 107, 199, 214
MluCI AATT 1 cut(s) 28
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 2 cut(s) 177, 189
MslI CAYNNNNRTG 1 cut(s) 130
NdeII GATC 4 cut(s) 103, 107, 199, 214
PkrI GCNGC 1 cut(s) 21
Ple19I CGATCG 2 cut(s) 202, 217
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PvuI CGATCG 2 cut(s) 202, 217
RgaI GCGATCGC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 130
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 4 cut(s) 103, 107, 199, 214
SchI GAGTC 1 cut(s) 226
SetI ASST 4 cut(s) 21, 181, 194, 231
SfaAI GCGATCGC 1 cut(s) 217
SgeI CNNG 7 cut(s) 37, 48, 123, 172, 174, 192, 241
SgfI GCGATCGC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 130
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 28
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 12, 106
TasI AATT 1 cut(s) 28
TseI GCWGC 1 cut(s) 19
TspGWI ACGGA 1 cut(s) 225
XapI RAATTY 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.