Rorug06G0128600

Endochitinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
17851711 .. 17852071
361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0128600.1

Sequence Viewer

Length: 210 bp
ATGGACGGCAGCGACGGCTCTGGTGTAGGAAACAACATGCTGAGGTTCTACACCGACGATGTTCTAGGCTTGAAGATCACGCCCACCGTCGTCCTCGTCATGAGCCGTTTGCTTCATCGGCTACGTCACCACCCTCCACATGTTCGGCAAGCTCTAGCTCCACCAATCTACCCGCTCGTAACCCGAATCGTTCTAGATCCAGAGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.68

Weight (kDa)

8.33

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 10 - 35 1.6e-08 Sec61beta family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 175
AciI CCGC 1 cut(s) 173
AclWI GGATC 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 1 cut(s) 73
AluBI AGCT 2 cut(s) 152, 158
AluI AGCT 2 cut(s) 152, 158
AlwI GGATC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 119
BbvCI CCTCAGC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 21
BceAI ACGGC 3 cut(s) 22, 31, 90
BfaI CTAG 3 cut(s) 65, 155, 194
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bpu10I CCTNAGC 1 cut(s) 41
BseMII CTCAG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 75, 196
BspACI CCGC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 33
BspHI TCATGA 1 cut(s) 99
BspPI GGATC 1 cut(s) 191
BsrBI CCGCTC 1 cut(s) 175
BssMI GATC 2 cut(s) 75, 196
Bst4CI ACNGT 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 41
BstKTI GATC 2 cut(s) 78, 199
BstMBI GATC 2 cut(s) 75, 196
BstMWI GCNNNNNNNGC 2 cut(s) 15, 118
BstNSI RCATGY 2 cut(s) 40, 143
BstV1I GCAGC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 150
CciI TCATGA 1 cut(s) 99
CviAII CATG 3 cut(s) 37, 100, 140
CviJI RGCY 6 cut(s) 18, 69, 105, 121, 152, 158
CviKI_1 RGCY 6 cut(s) 18, 69, 105, 121, 152, 158
DdeI CTNAG 1 cut(s) 41
DpnI GATC 2 cut(s) 77, 198
DpnII GATC 2 cut(s) 75, 196
FaeI CATG 3 cut(s) 40, 103, 143
FaiI YATR 3 cut(s) 38, 101, 141
FatI CATG 3 cut(s) 36, 99, 139
FauI CCCGC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 3 cut(s) 65, 155, 194
GluI GCNGC 1 cut(s) 10
Hin1II CATG 3 cut(s) 40, 103, 143
HinfI GANTC 2 cut(s) 186, 203
HphI GGTGA 1 cut(s) 119
Hpy188III TCNNGA 4 cut(s) 100, 194, 200, 207
Hpy99I CGWCG 3 cut(s) 17, 59, 92
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 118
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 3 cut(s) 40, 103, 143
Kzo9I GATC 2 cut(s) 75, 196
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 1 cut(s) 6
Lsp1109I GCAGC 1 cut(s) 21
MaeI CTAG 3 cut(s) 65, 155, 194
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 2 cut(s) 125, 178
MalI GATC 2 cut(s) 77, 198
MbiI CCGCTC 1 cut(s) 175
MboI GATC 2 cut(s) 75, 196
MboII GAAGA 1 cut(s) 85
MflI RGATCY 1 cut(s) 196
MnlI CCTC 3 cut(s) 36, 104, 144
MwoI GCNNNNNNNGC 2 cut(s) 15, 118
NdeII GATC 2 cut(s) 75, 196
NlaIII CATG 3 cut(s) 40, 103, 143
NmuCI GTSAC 1 cut(s) 125
NspI RCATGY 2 cut(s) 40, 143
PagI TCATGA 1 cut(s) 99
PciI ACATGT 1 cut(s) 139
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 1 cut(s) 11
PscI ACATGT 1 cut(s) 139
PsuI RGATCY 1 cut(s) 196
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 2 cut(s) 75, 196
SetI ASST 4 cut(s) 47, 127, 154, 160
SsiI CCGC 1 cut(s) 173
SspMI CTAG 3 cut(s) 65, 155, 194
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 127
TfiI GAWTC 1 cut(s) 186
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 104
XbaI TCTAGA 1 cut(s) 193
XceI RCATGY 2 cut(s) 40, 143
XspI CTAG 3 cut(s) 65, 155, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.