RLG00000016736

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000495
Physical Location & Seq
Forward (+)
9561550 .. 9562000
451 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016736

Sequence Viewer

Length: 375 bp
ATGAAGTTCCACACTCTTATCATCCTCTCCCTAACTTTGGTGATCGGGGCCTTGGCAGAGCAGTGTGGGAGACAATCGGGAAGTGCAGCGTGTCCAAATAGGCTGTGTTGTAGCCAATATGGGTGGTGTGGCACAACAGCTGATTACTGTGGAATTGGTTGCCAAAGCCAATGTAGTTCTGGAGGTGGTGGGGATGGCTTAACCCCGACCCCTGACTCCAAGTGGTGGTGTAATGGGTTTTATAAGTATGATGCTTTCATTGCTGCTGCCCGATCCTTTAATGGGTTTGGCACAACTGGAGATGTTACTACACGCAAGAAGGAACTTTCTTCTTTCTTGGGTCAAACGTCACATGAGACAACCGGTCAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

125

Amino Acids

13.18

Weight (kDa)

7.5

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chitin_bind_1 PF00187 21 - 58 8.2e-15 Chitin recognition protein
Glyco_hydro_19 PF00182 76 - 123 7.9e-19 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AccB7I CCANNNNNTGG 1 cut(s) 225
AclWI GGATC 1 cut(s) 267
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 3 cut(s) 37, 225, 282
AgeI ACCGGT 1 cut(s) 362
AhdI GACNNNNNGTC 1 cut(s) 363
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw26I GTCTC 2 cut(s) 64, 350
AlwI GGATC 1 cut(s) 267
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 3 cut(s) 86, 263, 266
AsiGI ACCGGT 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 52
BbvI GCAGC 3 cut(s) 98, 250, 253
BccI CCATC 1 cut(s) 188
BcoDI GTCTC 2 cut(s) 64, 350
BisI GCNGC 3 cut(s) 87, 264, 267
BlsI GCNGC 3 cut(s) 88, 265, 268
BmcAI AGTACT 1 cut(s) 371
BmeRI GACNNNNNGTC 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 1 cut(s) 241
BpmI CTGGAG 2 cut(s) 201, 318
BsaJI CCNNGG 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 362
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 225, 282
Bse118I RCCGGY 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 2 cut(s) 21, 199
BseLI CCNNNNNNNGG 3 cut(s) 37, 225, 282
BseMI GCAATG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 301
BseXI GCAGC 3 cut(s) 98, 250, 253
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 1 cut(s) 50
BshTI ACCGGT 1 cut(s) 362
BsiSI CCGG 1 cut(s) 363
BslI CCNNNNNNNGG 3 cut(s) 37, 225, 282
BsmAI GTCTC 2 cut(s) 64, 350
BsnI GGCC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 42, 272
BspANI GGCC 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 362
BsrI ACTGG 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 362
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 2 cut(s) 42, 272
BssT1I CCWWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 149
BstF5I GGATG 2 cut(s) 21, 199
BstKTI GATC 2 cut(s) 45, 275
BstMAI GTCTC 2 cut(s) 64, 350
BstMBI GATC 2 cut(s) 42, 272
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstV1I GCAGC 3 cut(s) 98, 250, 253
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 2 cut(s) 21, 199
BtsI GCAGTG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 362
Cfr13I GGNCC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 370
CspAI ACCGGT 1 cut(s) 362
CspCI CAANNNNNGTGG 2 cut(s) 104, 139
CviAII CATG 1 cut(s) 353
CviJI RGCY 6 cut(s) 50, 103, 114, 140, 168, 198
CviKI_1 RGCY 6 cut(s) 50, 103, 114, 140, 168, 198
CviQI GTAC 1 cut(s) 370
DpnI GATC 2 cut(s) 44, 274
DpnII GATC 2 cut(s) 42, 272
DriI GACNNNNNGTC 1 cut(s) 363
Eam1105I GACNNNNNGTC 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 356
FaiI YATR 4 cut(s) 120, 243, 249, 354
FatI CATG 1 cut(s) 352
Fnu4HI GCNGC 3 cut(s) 87, 264, 267
FokI GGATG 2 cut(s) 8, 206
Fsp4HI GCNGC 3 cut(s) 87, 264, 267
GluI GCNGC 3 cut(s) 87, 264, 267
GsuI CTGGAG 2 cut(s) 201, 318
HaeIII GGCC 1 cut(s) 50
HapII CCGG 1 cut(s) 363
Hin1II CATG 1 cut(s) 356
HinfI GANTC 1 cut(s) 215
HpaII CCGG 1 cut(s) 363
HphI GGTGA 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 78, 180
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpySE526I ACGT 1 cut(s) 347
Hsp92II CATG 1 cut(s) 356
Kzo9I GATC 2 cut(s) 42, 272
LpnPI CCDG 3 cut(s) 165, 225, 282
Lsp1109I GCAGC 3 cut(s) 98, 250, 253
LweI GCATC 1 cut(s) 241
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 2 cut(s) 304, 348
MalI GATC 2 cut(s) 44, 274
MboI GATC 2 cut(s) 42, 272
MboII GAAGA 1 cut(s) 321
MluCI AATT 1 cut(s) 153
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 2 cut(s) 35, 176
MseI TTAA 2 cut(s) 200, 279
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 260
NdeII GATC 2 cut(s) 42, 272
NlaIII CATG 1 cut(s) 356
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 348
PflMI CCANNNNNTGG 1 cut(s) 225
PinAI ACCGGT 1 cut(s) 362
PkrI GCNGC 3 cut(s) 88, 265, 268
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PsiI TTATAA 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 48
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SaqAI TTAA 2 cut(s) 200, 279
SatI GCNGC 3 cut(s) 87, 264, 267
Sau3AI GATC 2 cut(s) 42, 272
Sau96I GGNCC 1 cut(s) 48
ScaI AGTACT 1 cut(s) 371
SchI GAGTC 1 cut(s) 209
SetI ASST 3 cut(s) 142, 187, 350
SfaNI GCATC 1 cut(s) 241
Sse9I AATT 1 cut(s) 153
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 149
TaiI ACGT 1 cut(s) 350
TasI AATT 1 cut(s) 153
TatI WGTACW 1 cut(s) 369
Tru1I TTAA 2 cut(s) 200, 279
Tru9I TTAA 2 cut(s) 200, 279
TscAI CASTG 1 cut(s) 68
TseFI GTSAC 1 cut(s) 348
TseI GCWGC 3 cut(s) 86, 263, 266
Tsp45I GTSAC 1 cut(s) 348
TspDTI ATGAA 2 cut(s) 17, 247
TspRI CASTG 1 cut(s) 68
Van91I CCANNNNNTGG 1 cut(s) 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
ZrmI AGTACT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.