Rh2BG117600

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000495
Physical Location & Seq
Forward (+)
9996008 .. 9996943
936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG117600.1

Sequence Viewer

Length: 615 bp
ATGGGCGCTGCCCTAGCAATGGGTTCTACAAGCGATGTGGCTACCCAGAAAAAAGAGCTTGCTGCTTTCTTGGGTCAAACCTCTCACGAAACCACTGGAGGATGGTCAAGTGCACCAGATGGCCCTTATGCTTGGGGATATTGCTTTATCAGGGAAAACAACCAAGACGTGTACTGCACTCCATCAGCCCAATATCCATGTGCAGCCGGCAAAAAATATTACGGCCGAGGACCAATCCAACTTACCCACAACTACAACTATGCTCAAGCGGGTAGAGCAATCGGAGTGGATCTGATAAACAATCCAGATCTAGTAGCCACAGACCCGGTTGTATCATTCAAGACAGCTATATGGTTTTGGATGACCCCTCAAGGAAACAAACCGTCAAGTCATGACGTCATTACCGGTCGTTGGAATCCATCTGCTGCAGATAGTTCGGCGGGTCGGGTCCCTGGATATGGAGTGATTACAAACATAATCAATGGCGGACTTGAATGTGGGCATGGTCAAGATAATAGGGTAGTTGATCGGATCGGGTTCTACAAGAGGTACTGTGGCATATTGGGAGTGAGCACGGGGGACTACTTGGACTGTAACAATCAAAGACCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

204

Amino Acids

22.03

Weight (kDa)

6.87

Isoelectric Point (pI)

31.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 6 - 198 1.2e-108 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 399
AciI CCGC 3 cut(s) 269, 440, 486
AclWI GGATC 2 cut(s) 297, 539
AcoI YGGCCR 1 cut(s) 223
AcyI GRCGYC 1 cut(s) 396
AfaI GTAC 2 cut(s) 173, 551
AfiI CCNNNNNNNGG 3 cut(s) 19, 411, 458
AflIII ACRYGT 1 cut(s) 168
AgeI ACCGGT 1 cut(s) 404
AgsI TTSAA 2 cut(s) 340, 494
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 1 cut(s) 451
AluBI AGCT 2 cut(s) 58, 347
AluI AGCT 2 cut(s) 58, 347
Alw21I GWGCWC 2 cut(s) 115, 575
Alw44I GTGCAC 1 cut(s) 111
AlwI GGATC 2 cut(s) 297, 539
AoxI GGCC 2 cut(s) 121, 223
ApaLI GTGCAC 1 cut(s) 111
ApeKI GCWGC 4 cut(s) 8, 62, 203, 425
AsiGI ACCGGT 1 cut(s) 404
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 3 cut(s) 122, 230, 448
AsuC2I CCSGG 1 cut(s) 326
AvaII GGWCC 2 cut(s) 230, 448
BaeGI GKGCMC 1 cut(s) 115
Bbv12I GWGCWC 2 cut(s) 115, 575
BbvI GCAGC 3 cut(s) 49, 215, 412
BccI CCATC 4 cut(s) 96, 113, 190, 427
BceAI ACGGC 1 cut(s) 238
BcgI CGANNNNNNTGC 2 cut(s) 417, 451
BciT130I CCWGG 1 cut(s) 453
BcnI CCSGG 1 cut(s) 326
BfaI CTAG 2 cut(s) 14, 311
BfmI CTRYAG 1 cut(s) 426
BfoI RGCGCY 1 cut(s) 9
BglII AGATCT 1 cut(s) 307
BisI GCNGC 4 cut(s) 9, 63, 204, 426
BlsI GCNGC 4 cut(s) 10, 64, 205, 427
Bme1390I CCNGG 2 cut(s) 326, 453
Bme18I GGWCC 2 cut(s) 230, 448
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 3 cut(s) 122, 230, 448
BmiI GGNNCC 2 cut(s) 449, 450
BmrFI CCNGG 2 cut(s) 326, 453
BpmI CTGGAG 1 cut(s) 117
BpuEI CTTGAG 2 cut(s) 249, 354
BpuMI CCSGG 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 226, 451
BsaWI WCCGGW 1 cut(s) 404
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 411, 458
Bse118I RCCGGY 2 cut(s) 206, 404
Bse1I ACTGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 2 cut(s) 226, 451
BseGI GGATG 2 cut(s) 107, 366
BseLI CCNNNNNNNGG 3 cut(s) 19, 411, 458
BseMI GCAATG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 115
BseX3I CGGCCG 1 cut(s) 223
BseXI GCAGC 3 cut(s) 49, 215, 412
BsgI GTGCAG 2 cut(s) 160, 222
Bsh1285I CGRYCG 2 cut(s) 226, 409
BshFI GGCC 2 cut(s) 123, 225
BshTI ACCGGT 1 cut(s) 404
BsiEI CGRYCG 2 cut(s) 226, 409
BsiHKAI GWGCWC 2 cut(s) 115, 575
BsiSI CCGG 3 cut(s) 207, 326, 405
BslFI GGGAC 2 cut(s) 434, 593
BslI CCNNNNNNNGG 3 cut(s) 19, 411, 458
BsmFI GGGAC 2 cut(s) 434, 593
BsnI GGCC 2 cut(s) 123, 225
Bsp1286I GDGCHC 2 cut(s) 115, 575
Bsp143I GATC 4 cut(s) 289, 307, 526, 531
BspACI CCGC 3 cut(s) 269, 440, 486
BspANI GGCC 2 cut(s) 123, 225
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 2 cut(s) 449, 450
BspMAI CTGCAG 1 cut(s) 430
BspPI GGATC 2 cut(s) 297, 539
BsrDI GCAATG 1 cut(s) 24
BsrFI RCCGGY 2 cut(s) 206, 404
BsrI ACTGG 1 cut(s) 100
BssAI RCCGGY 2 cut(s) 206, 404
BssECI CCNNGG 2 cut(s) 226, 451
BssMI GATC 4 cut(s) 289, 307, 526, 531
BssNI GRCGYC 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 3 cut(s) 384, 554, 593
BstACI GRCGYC 1 cut(s) 396
BstC8I GCNNGC 2 cut(s) 60, 208
BstF5I GGATG 2 cut(s) 107, 366
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 4 cut(s) 292, 310, 529, 534
BstMBI GATC 4 cut(s) 289, 307, 526, 531
BstMCI CGRYCG 2 cut(s) 226, 409
BstMWI GCNNNNNNNGC 2 cut(s) 14, 275
BstNI CCWGG 1 cut(s) 453
BstSCI CCNGG 2 cut(s) 324, 451
BstSFI CTRYAG 1 cut(s) 426
BstSLI GKGCMC 1 cut(s) 115
BstV1I GCAGC 3 cut(s) 49, 215, 412
BstX2I RGATCY 2 cut(s) 289, 307
BstYI RGATCY 2 cut(s) 289, 307
BstZI CGGCCG 1 cut(s) 223
BsuRI GGCC 2 cut(s) 123, 225
BtgZI GCGATG 1 cut(s) 48
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 2 cut(s) 107, 366
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 2 cut(s) 60, 208
CciI TCATGA 1 cut(s) 391
CfoI GCGC 1 cut(s) 8
Cfr10I RCCGGY 2 cut(s) 206, 404
Cfr13I GGNCC 3 cut(s) 122, 230, 448
Csp6I GTAC 2 cut(s) 172, 550
CspAI ACCGGT 1 cut(s) 404
CspCI CAANNNNNGTGG 4 cut(s) 18, 53, 267, 302
CviAII CATG 3 cut(s) 198, 392, 503
CviJI RGCY 8 cut(s) 41, 58, 123, 188, 206, 225, 317, 347
CviKI_1 RGCY 8 cut(s) 41, 58, 123, 188, 206, 225, 317, 347
CviQI GTAC 2 cut(s) 172, 550
DpnI GATC 4 cut(s) 291, 309, 528, 533
DpnII GATC 4 cut(s) 289, 307, 526, 531
EaeI YGGCCR 1 cut(s) 223
EagI CGGCCG 1 cut(s) 223
EciI GGCGGA 1 cut(s) 501
EclXI CGGCCG 1 cut(s) 223
Eco47I GGWCC 2 cut(s) 230, 448
Eco52I CGGCCG 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 451
FaeI CATG 3 cut(s) 201, 395, 506
FaqI GGGAC 2 cut(s) 434, 593
FatI CATG 3 cut(s) 197, 391, 502
FauI CCCGC 2 cut(s) 262, 433
Fnu4HI GCNGC 4 cut(s) 9, 63, 204, 426
FokI GGATG 2 cut(s) 114, 373
Fsp4HI GCNGC 4 cut(s) 9, 63, 204, 426
FspBI CTAG 2 cut(s) 14, 311
GlaI GCGC 1 cut(s) 7
GluI GCNGC 4 cut(s) 9, 63, 204, 426
GsuI CTGGAG 1 cut(s) 117
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 2 cut(s) 123, 225
HapII CCGG 3 cut(s) 207, 326, 405
HhaI GCGC 1 cut(s) 8
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 3 cut(s) 201, 395, 506
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 1 cut(s) 415
HpaII CCGG 3 cut(s) 207, 326, 405
Hpy166II GTNNAC 2 cut(s) 113, 172
Hpy188I TCNGA 3 cut(s) 284, 294, 531
Hpy188III TCNNGA 5 cut(s) 86, 305, 340, 392, 509
Hpy8I GTNNAC 2 cut(s) 113, 172
HpyCH4III ACNGT 3 cut(s) 384, 554, 593
HpyCH4IV ACGT 2 cut(s) 168, 396
HpyCH4V TGCA 4 cut(s) 113, 177, 203, 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 275
HpySE526I ACGT 2 cut(s) 168, 396
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 3 cut(s) 201, 395, 506
HspAI GCGC 1 cut(s) 6
KflI GGGWCCC 1 cut(s) 448
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
Kzo9I GATC 4 cut(s) 289, 307, 526, 531
Lsp1109I GCAGC 3 cut(s) 49, 215, 412
MaeI CTAG 2 cut(s) 14, 311
MaeII ACGT 2 cut(s) 168, 396
MaeIII GTNAC 1 cut(s) 593
MalI GATC 4 cut(s) 291, 309, 528, 533
MboI GATC 4 cut(s) 289, 307, 526, 531
MflI RGATCY 2 cut(s) 289, 307
MhlI GDGCHC 2 cut(s) 115, 575
MmeI TCCRAC 2 cut(s) 262, 392
MnlI CCTC 5 cut(s) 91, 92, 221, 378, 540
MroNI GCCGGC 1 cut(s) 206
MspI CCGG 3 cut(s) 207, 326, 405
MspR9I CCNGG 2 cut(s) 326, 453
MvaI CCWGG 1 cut(s) 453
MwoI GCNNNNNNNGC 2 cut(s) 14, 275
NaeI GCCGGC 1 cut(s) 208
NciI CCSGG 1 cut(s) 326
NdeII GATC 4 cut(s) 289, 307, 526, 531
NgoMIV GCCGGC 1 cut(s) 206
NlaIII CATG 3 cut(s) 201, 395, 506
NlaIV GGNNCC 2 cut(s) 449, 450
NmeAIII GCCGAG 1 cut(s) 251
PagI TCATGA 1 cut(s) 391
PdiI GCCGGC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 415
PinAI ACCGGT 1 cut(s) 404
PkrI GCNGC 4 cut(s) 10, 64, 205, 427
PpuMI RGGWCCY 1 cut(s) 448
Psp5II RGGWCCY 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 451
PspGI CCWGG 1 cut(s) 451
PspN4I GGNNCC 2 cut(s) 449, 450
PspPI GGNCC 3 cut(s) 122, 230, 448
PspPPI RGGWCCY 1 cut(s) 448
PstI CTGCAG 1 cut(s) 430
PsuI RGATCY 2 cut(s) 289, 307
RsaI GTAC 2 cut(s) 173, 551
RsaNI GTAC 2 cut(s) 172, 550
SatI GCNGC 4 cut(s) 9, 63, 204, 426
Sau3AI GATC 4 cut(s) 289, 307, 526, 531
Sau96I GGNCC 3 cut(s) 122, 230, 448
ScrFI CCNGG 2 cut(s) 326, 453
SduI GDGCHC 2 cut(s) 115, 575
SetI ASST 6 cut(s) 60, 83, 171, 349, 399, 551
SfcI CTRYAG 1 cut(s) 426
SinI GGWCC 2 cut(s) 230, 448
SmlI CTYRAG 2 cut(s) 264, 369
SmoI CTYRAG 2 cut(s) 264, 369
SsiI CCGC 3 cut(s) 269, 440, 486
SspI AATATT 1 cut(s) 218
SspMI CTAG 2 cut(s) 14, 311
StyD4I CCNGG 2 cut(s) 324, 451
TaaI ACNGT 3 cut(s) 384, 554, 593
TaiI ACGT 2 cut(s) 171, 399
TatI WGTACW 1 cut(s) 171
TfiI GAWTC 1 cut(s) 415
TscAI CASTG 1 cut(s) 100
TseI GCWGC 4 cut(s) 8, 62, 203, 425
TspRI CASTG 1 cut(s) 100
VneI GTGCAC 1 cut(s) 111
VpaK11BI GGWCC 2 cut(s) 230, 448
XspI CTAG 2 cut(s) 14, 311
ZraI GACGTC 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.