Rh2DG119100

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000495
Physical Location & Seq
Forward (+)
9920152 .. 9934820
14669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG119100.1

Sequence Viewer

Length: 528 bp
ATGCTTAAGTATCGCAATGATGCACGGTGCAAGGGCAACGGTTTCTACAAGTATGATGCTTTCATTGCTGCTGCTCGATCATTCCCTGGATTTGGCACCACTGGAGATGATGCAATGGGCAAGAGGAAGATCACTGCTTTCTTAGCTCAAACCTTTCATGAGACCACTGCAACTACAACTATGGTCAGGCGGGTAAAGCAATCGGAGTCGGATCTGATAAACAATCCGGACCTAGTGGCCACAGACCCGGTTGTTTCATTCAAGACAGCAATGTGGTTTTGGATGACTCCACAATCAAACAAACCGTCAAGCCACGACGTCATTACCGGACGTTGGAACCCATCTGATGCAGATATATGCGCGGGTCGGGTCCCTGGATATGGTGTGATTACTAACATCATGAATGGCGGACTTGAATGTGGGCATGGTCAAGATGATAAGGTGGCGAATAGGATCGGGTTCTATAGGAGGTACGCGGGCATATTGGGAGTGAGCCCTGGAGACAACTTAGATTGCTGTAACCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

175

Amino Acids

19.22

Weight (kDa)

8.61

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 1 - 59 7.4e-22 Chitinase class I
Glyco_hydro_19 PF00182 70 - 172 3e-58 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 321
AccB1I GGYRCC 1 cut(s) 95
AccII CGCG 2 cut(s) 362, 476
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 4 cut(s) 190, 362, 408, 476
AclWI GGATC 2 cut(s) 219, 461
AcoI YGGCCR 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 3 cut(s) 92, 333, 380
AflII CTTAAG 1 cut(s) 5
AgsI TTSAA 2 cut(s) 262, 416
AjnI CCWGG 3 cut(s) 85, 373, 496
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw26I GTCTC 2 cut(s) 155, 495
AlwI GGATC 2 cut(s) 219, 461
Aor13HI TCCGGA 1 cut(s) 226
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 2 cut(s) 68, 71
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 2 cut(s) 229, 370
AsuC2I CCSGG 1 cut(s) 248
AvaII GGWCC 2 cut(s) 229, 370
BalI TGGCCA 1 cut(s) 239
BanI GGYRCC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 497
BbvI GCAGC 2 cut(s) 55, 58
BccI CCATC 1 cut(s) 349
BciT130I CCWGG 3 cut(s) 87, 375, 498
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 2 cut(s) 155, 495
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 463
BfrI CTTAAG 1 cut(s) 5
BisI GCNGC 2 cut(s) 69, 72
BlsI GCNGC 2 cut(s) 70, 73
Bme1390I CCNGG 4 cut(s) 87, 248, 375, 498
Bme18I GGWCC 2 cut(s) 229, 370
BmgT120I GGNCC 2 cut(s) 229, 370
BmiI GGNNCC 4 cut(s) 97, 338, 371, 372
BmrFI CCNGG 4 cut(s) 87, 248, 375, 498
BmsI GCATC 4 cut(s) 10, 46, 100, 337
BpmI CTGGAG 2 cut(s) 123, 519
BpuMI CCSGG 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 85, 373, 496
BsaWI WCCGGW 2 cut(s) 226, 326
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 333, 380
Bse1I ACTGG 1 cut(s) 106
Bse3DI GCAATG 4 cut(s) 22, 63, 120, 276
BseAI TCCGGA 1 cut(s) 226
BseBI CCWGG 3 cut(s) 87, 375, 498
BseDI CCNNGG 3 cut(s) 85, 373, 496
BseGI GGATG 1 cut(s) 288
BseLI CCNNNNNNNGG 3 cut(s) 92, 333, 380
BseMI GCAATG 4 cut(s) 22, 63, 120, 276
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 2 cut(s) 55, 58
Bsh1236I CGCG 2 cut(s) 362, 476
BshFI GGCC 1 cut(s) 239
BshNI GGYRCC 1 cut(s) 95
BsiSI CCGG 3 cut(s) 227, 248, 327
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 3 cut(s) 92, 333, 380
BsmAI GTCTC 2 cut(s) 155, 495
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 1 cut(s) 239
Bso31I GGTCTC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 497
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 4 cut(s) 77, 129, 211, 453
BspACI CCGC 4 cut(s) 190, 362, 408, 476
BspANI GGCC 1 cut(s) 239
BspEI TCCGGA 1 cut(s) 226
BspFNI CGCG 2 cut(s) 362, 476
BspHI TCATGA 2 cut(s) 157, 399
BspLI GGNNCC 4 cut(s) 97, 338, 371, 372
BspPI GGATC 2 cut(s) 219, 461
BspT107I GGYRCC 1 cut(s) 95
BspTI CTTAAG 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 4 cut(s) 22, 63, 120, 276
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 3 cut(s) 85, 373, 496
BssMI GATC 4 cut(s) 77, 129, 211, 453
BssNI GRCGYC 1 cut(s) 318
Bst2UI CCWGG 3 cut(s) 87, 375, 498
Bst4CI ACNGT 3 cut(s) 27, 41, 306
BstACI GRCGYC 1 cut(s) 318
BstAFI CTTAAG 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 2 cut(s) 142, 508
BstF5I GGATG 1 cut(s) 288
BstFNI CGCG 2 cut(s) 362, 476
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 4 cut(s) 80, 132, 214, 456
BstMAI GTCTC 2 cut(s) 155, 495
BstMBI GATC 4 cut(s) 77, 129, 211, 453
BstMWI GCNNNNNNNGC 3 cut(s) 65, 143, 196
BstNI CCWGG 3 cut(s) 87, 375, 498
BstSCI CCNGG 4 cut(s) 85, 246, 373, 496
BstSFI CTRYAG 1 cut(s) 463
BstUI CGCG 2 cut(s) 362, 476
BstV1I GCAGC 2 cut(s) 55, 58
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 288
BtsI GCAGTG 2 cut(s) 132, 165
BtsIMutI CAGTG 3 cut(s) 99, 132, 165
Cac8I GCNNGC 1 cut(s) 478
CciI TCATGA 2 cut(s) 157, 399
CfoI GCGC 1 cut(s) 362
Cfr13I GGNCC 2 cut(s) 229, 370
Csp6I GTAC 1 cut(s) 472
CviAII CATG 3 cut(s) 158, 400, 425
CviJI RGCY 4 cut(s) 146, 239, 312, 495
CviKI_1 RGCY 4 cut(s) 146, 239, 312, 495
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 2 cut(s) 142, 508
DpnI GATC 4 cut(s) 79, 131, 213, 455
DpnII GATC 4 cut(s) 77, 129, 211, 453
EaeI YGGCCR 1 cut(s) 237
EciI GGCGGA 1 cut(s) 423
Eco24I GRGCYC 1 cut(s) 497
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 2 cut(s) 229, 370
EcoO109I RGGNCCY 1 cut(s) 370
EcoRII CCWGG 3 cut(s) 85, 373, 496
EcoT38I GRGCYC 1 cut(s) 497
FaeI CATG 3 cut(s) 161, 403, 428
FaqI GGGAC 1 cut(s) 356
FatI CATG 3 cut(s) 157, 399, 424
FauI CCCGC 3 cut(s) 183, 355, 469
Fnu4HI GCNGC 2 cut(s) 69, 72
FokI GGATG 1 cut(s) 295
FriOI GRGCYC 1 cut(s) 497
Fsp4HI GCNGC 2 cut(s) 69, 72
FspBI CTAG 1 cut(s) 233
GlaI GCGC 1 cut(s) 361
GluI GCNGC 2 cut(s) 69, 72
GsuI CTGGAG 2 cut(s) 123, 519
HaeIII GGCC 1 cut(s) 239
HapII CCGG 3 cut(s) 227, 248, 327
HhaI GCGC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 3 cut(s) 161, 403, 428
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HinfI GANTC 2 cut(s) 206, 286
HpaII CCGG 3 cut(s) 227, 248, 327
Hpy188I TCNGA 4 cut(s) 205, 211, 216, 346
Hpy188III TCNNGA 5 cut(s) 158, 227, 262, 400, 431
Hpy99I CGWCG 1 cut(s) 320
HpyCH4III ACNGT 3 cut(s) 27, 41, 306
HpyCH4IV ACGT 2 cut(s) 318, 331
HpyCH4V TGCA 5 cut(s) 23, 30, 113, 170, 350
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 143, 196
HpyF3I CTNAG 2 cut(s) 142, 508
HpySE526I ACGT 2 cut(s) 318, 331
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 3 cut(s) 161, 403, 428
HspAI GCGC 1 cut(s) 360
KflI GGGWCCC 1 cut(s) 370
Kpn2I TCCGGA 1 cut(s) 226
Kzo9I GATC 4 cut(s) 77, 129, 211, 453
Lsp1109I GCAGC 2 cut(s) 55, 58
LweI GCATC 4 cut(s) 10, 46, 100, 337
MaeI CTAG 1 cut(s) 233
MaeII ACGT 2 cut(s) 318, 331
MaeIII GTNAC 1 cut(s) 518
MalI GATC 4 cut(s) 79, 131, 213, 455
MboI GATC 4 cut(s) 77, 129, 211, 453
MboII GAAGA 1 cut(s) 139
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 497
MlsI TGGCCA 1 cut(s) 239
MluNI TGGCCA 1 cut(s) 239
MlyI GAGTC 2 cut(s) 215, 280
MmeI TCCRAC 2 cut(s) 189, 314
MnlI CCTC 2 cut(s) 117, 462
Mox20I TGGCCA 1 cut(s) 239
MroI TCCGGA 1 cut(s) 226
MscI TGGCCA 1 cut(s) 239
MseI TTAA 1 cut(s) 6
Msp20I TGGCCA 1 cut(s) 239
MspCI CTTAAG 1 cut(s) 5
MspI CCGG 3 cut(s) 227, 248, 327
MspR9I CCNGG 4 cut(s) 87, 248, 375, 498
MvaI CCWGG 3 cut(s) 87, 375, 498
MvnI CGCG 2 cut(s) 362, 476
MwoI GCNNNNNNNGC 3 cut(s) 65, 143, 196
NciI CCSGG 1 cut(s) 248
NdeII GATC 4 cut(s) 77, 129, 211, 453
NlaIII CATG 3 cut(s) 161, 403, 428
NlaIV GGNNCC 4 cut(s) 97, 338, 371, 372
PagI TCATGA 2 cut(s) 157, 399
PkrI GCNGC 2 cut(s) 70, 73
PleI GAGTC 2 cut(s) 214, 280
PpsI GAGTC 2 cut(s) 214, 280
PpuMI RGGWCCY 1 cut(s) 370
Psp5II RGGWCCY 1 cut(s) 370
Psp6I CCWGG 3 cut(s) 85, 373, 496
PspGI CCWGG 3 cut(s) 85, 373, 496
PspN4I GGNNCC 4 cut(s) 97, 338, 371, 372
PspPI GGNCC 2 cut(s) 229, 370
PspPPI RGGWCCY 1 cut(s) 370
PsuI RGATCY 1 cut(s) 211
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 2 cut(s) 69, 72
Sau3AI GATC 4 cut(s) 77, 129, 211, 453
Sau96I GGNCC 2 cut(s) 229, 370
SchI GAGTC 2 cut(s) 215, 280
ScrFI CCNGG 4 cut(s) 87, 248, 375, 498
SduI GDGCHC 1 cut(s) 497
SetI ASST 8 cut(s) 148, 155, 234, 321, 334, 444, 473, 525
SfaNI GCATC 4 cut(s) 10, 46, 100, 337
SfcI CTRYAG 1 cut(s) 463
SinI GGWCC 2 cut(s) 229, 370
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SsiI CCGC 4 cut(s) 190, 362, 408, 476
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 4 cut(s) 85, 246, 373, 496
TaaI ACNGT 3 cut(s) 27, 41, 306
TaiI ACGT 2 cut(s) 321, 334
TaqI TCGA 1 cut(s) 76
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 3 cut(s) 106, 139, 172
TseI GCWGC 2 cut(s) 68, 71
TspDTI ATGAA 4 cut(s) 52, 146, 246, 416
TspRI CASTG 3 cut(s) 106, 139, 172
Vha464I CTTAAG 1 cut(s) 5
VpaK11BI GGWCC 2 cut(s) 229, 370
XspI CTAG 1 cut(s) 233
ZraI GACGTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.