Rh2AG115000

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000495
Physical Location & Seq
Forward (+)
10272147 .. 10285740
13594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG115000.1

Sequence Viewer

Length: 309 bp
ATGAATAACAACTACAACTACTCTCAAGCGGGTCAAGCAATCAGAGTGGATCTGATAAATAACCCAGACCTAGTGGCCACAGACTCGGTTGTATCATTCAAGACAGCAATATGGTTTTGGATGACCGCTCAAGGAAACAAGCCATCAAGTCACGACGTTATCATCTGTCTTTGGAACCCATCTAGTGCGGACAGATCGGCGGGTCGGGTTCCCGGATATGGTGTGATCACTAACATAGTCAACGGCGGAAAGTGTGGGTGTGGTGCGGTTGCTAGCGTGGCGGATCGGGTTCTACAAGAGATACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

102

Amino Acids

10.91

Weight (kDa)

6.51

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 2 - 97 2.8e-45 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 128
AciI CCGC 7 cut(s) 29, 126, 188, 200, 246, 266, 281
AclWI GGATC 2 cut(s) 57, 291
AcoI YGGCCR 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 1 cut(s) 100
AlwI GGATC 2 cut(s) 57, 291
AoxI GGCC 1 cut(s) 75
AsuC2I CCSGG 1 cut(s) 213
AsuNHI GCTAGC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 77
BccI CCATC 2 cut(s) 151, 187
BceAI ACGGC 1 cut(s) 259
BclI TGATCA 1 cut(s) 225
BcnI CCSGG 1 cut(s) 213
BfaI CTAG 3 cut(s) 71, 183, 273
Bme1390I CCNGG 1 cut(s) 213
BmiI GGNNCC 2 cut(s) 176, 210
BmrFI CCNGG 1 cut(s) 213
BmtI GCTAGC 1 cut(s) 276
BpuEI CTTGAG 2 cut(s) 9, 114
BpuMI CCSGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 218
BshFI GGCC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 218
BsnI GGCC 1 cut(s) 77
Bsp143I GATC 4 cut(s) 49, 194, 225, 283
BspACI CCGC 7 cut(s) 29, 126, 188, 200, 246, 266, 281
BspANI GGCC 1 cut(s) 77
BspLI GGNNCC 2 cut(s) 176, 210
BspOI GCTAGC 1 cut(s) 276
BspPI GGATC 2 cut(s) 57, 291
BsrBI CCGCTC 1 cut(s) 128
BssMI GATC 4 cut(s) 49, 194, 225, 283
Bst4CI ACNGT 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 274
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 4 cut(s) 52, 197, 228, 286
BstMBI GATC 4 cut(s) 49, 194, 225, 283
BstMWI GCNNNNNNNGC 2 cut(s) 35, 278
BstSCI CCNGG 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 274
CspCI CAANNNNNGTGG 2 cut(s) 27, 62
CviJI RGCY 2 cut(s) 77, 142
CviKI_1 RGCY 2 cut(s) 77, 142
DpnI GATC 4 cut(s) 51, 196, 227, 285
DpnII GATC 4 cut(s) 49, 194, 225, 283
EaeI YGGCCR 1 cut(s) 75
EciI GGCGGA 2 cut(s) 261, 296
FaiI YATR 3 cut(s) 112, 219, 236
FauI CCCGC 2 cut(s) 22, 193
FbaI TGATCA 1 cut(s) 225
FokI GGATG 1 cut(s) 133
FspBI CTAG 3 cut(s) 71, 183, 273
HaeIII GGCC 1 cut(s) 77
HapII CCGG 1 cut(s) 213
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 213
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 44, 54
Hpy188III TCNNGA 2 cut(s) 100, 152
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4IV ACGT 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 278
HpySE526I ACGT 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 4 cut(s) 49, 194, 225, 283
LpnPI CCDG 2 cut(s) 78, 226
MaeI CTAG 3 cut(s) 71, 183, 273
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 149
MalI GATC 4 cut(s) 51, 196, 227, 285
MbiI CCGCTC 1 cut(s) 128
MboI GATC 4 cut(s) 49, 194, 225, 283
MflI RGATCY 1 cut(s) 49
MlsI TGGCCA 1 cut(s) 77
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 1 cut(s) 77
Mox20I TGGCCA 1 cut(s) 77
MscI TGGCCA 1 cut(s) 77
Msp20I TGGCCA 1 cut(s) 77
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 35, 278
NciI CCSGG 1 cut(s) 213
NdeII GATC 4 cut(s) 49, 194, 225, 283
NheI GCTAGC 1 cut(s) 272
NlaIV GGNNCC 2 cut(s) 176, 210
NmuCI GTSAC 1 cut(s) 149
PfoI TCCNGGA 1 cut(s) 211
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 176, 210
PsuI RGATCY 1 cut(s) 49
Sau3AI GATC 4 cut(s) 49, 194, 225, 283
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 213
SetI ASST 2 cut(s) 72, 159
SmlI CTYRAG 2 cut(s) 24, 129
SmoI CTYRAG 2 cut(s) 24, 129
SsiI CCGC 7 cut(s) 29, 126, 188, 200, 246, 266, 281
SspMI CTAG 3 cut(s) 71, 183, 273
StyD4I CCNGG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 306
TaiI ACGT 1 cut(s) 159
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 3 cut(s) 71, 183, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.