Rh2DG119200

beta-N-acetylhexosaminidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000495
Physical Location & Seq
Forward (+)
9935630 .. 9935809
180 bp
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UTR
Exon/CDS
Intron
Rh2DG119200.1

Sequence Viewer

Length: 180 bp
ATGACTTGTCGGGTTCCCGGGTATGGTACGATCATTGACATAGTCAATGGCGGAGTTAAGTGTGGGCGTGGTGCGGATGATAGCGTGGCTGATCATATTGGGTTCTACAAGAGGTACTGTGACGTATTCGGAGTGAGCCCTGGGGATAACTTGGACTGTTATAACCAAAGGCAGTTTTAG

Protein Analysis

59

Amino Acids

6.47

Weight (kDa)

5.47

Isoelectric Point (pI)

32.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 3 - 53 5.4e-21 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AciI CCGC 2 cut(s) 51, 74
AfaI GTAC 2 cut(s) 28, 116
AfiI CCNNNNNNNGG 1 cut(s) 23
AjnI CCWGG 1 cut(s) 139
Ama87I CYCGRG 1 cut(s) 17
AsuC2I CCSGG 2 cut(s) 18, 19
AvaI CYCGRG 1 cut(s) 17
BanII GRGCYC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 141
BclI TGATCA 1 cut(s) 91
BcnI CCSGG 2 cut(s) 18, 19
Bme1390I CCNGG 3 cut(s) 18, 19, 141
BmeT110I CYCGRG 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 3 cut(s) 18, 19, 141
BpuMI CCSGG 2 cut(s) 18, 19
BsaJI CCNNGG 3 cut(s) 17, 139, 140
Bsc4I CCNNNNNNNGG 1 cut(s) 23
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 3 cut(s) 17, 139, 140
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 2 cut(s) 30, 91
BspACI CCGC 2 cut(s) 51, 74
BspLI GGNNCC 1 cut(s) 15
BssECI CCNNGG 3 cut(s) 17, 139, 140
BssMI GATC 2 cut(s) 30, 91
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 119, 158
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 2 cut(s) 33, 94
BstMBI GATC 2 cut(s) 30, 91
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 3 cut(s) 16, 17, 139
BtsCI GGATG 1 cut(s) 82
Cfr9I CCCGGG 1 cut(s) 17
Csp6I GTAC 2 cut(s) 27, 115
CviJI RGCY 2 cut(s) 89, 138
CviKI_1 RGCY 2 cut(s) 89, 138
CviQI GTAC 2 cut(s) 27, 115
DpnI GATC 2 cut(s) 32, 93
DpnII GATC 2 cut(s) 30, 91
EciI GGCGGA 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 140
FaiI YATR 4 cut(s) 24, 41, 96, 162
FbaI TGATCA 1 cut(s) 91
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 140
HapII CCGG 1 cut(s) 18
HpaII CCGG 1 cut(s) 18
Hpy188I TCNGA 1 cut(s) 131
HpyCH4III ACNGT 2 cut(s) 119, 158
HpyCH4IV ACGT 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 2 cut(s) 30, 91
LpnPI CCDG 3 cut(s) 31, 126, 153
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 119
MalI GATC 2 cut(s) 32, 93
MboI GATC 2 cut(s) 30, 91
MhlI GDGCHC 1 cut(s) 140
MnlI CCTC 1 cut(s) 105
MseI TTAA 1 cut(s) 57
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 3 cut(s) 18, 19, 141
MvaI CCWGG 1 cut(s) 141
NciI CCSGG 2 cut(s) 18, 19
NdeII GATC 2 cut(s) 30, 91
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 119
PasI CCCWGGG 1 cut(s) 140
PflFI GACNNNGTC 1 cut(s) 41
PsiI TTATAA 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 15
PsyI GACNNNGTC 1 cut(s) 41
RsaI GTAC 2 cut(s) 28, 116
RsaNI GTAC 2 cut(s) 27, 115
SaqAI TTAA 1 cut(s) 57
Sau3AI GATC 2 cut(s) 30, 91
ScrFI CCNGG 3 cut(s) 18, 19, 141
SduI GDGCHC 1 cut(s) 140
SetI ASST 2 cut(s) 116, 126
SmaI CCCGGG 1 cut(s) 19
SsiI CCGC 2 cut(s) 51, 74
StyD4I CCNGG 3 cut(s) 16, 17, 139
TaaI ACNGT 2 cut(s) 119, 158
TaiI ACGT 1 cut(s) 126
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspMI CCCGGG 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 41
XmaI CCCGGG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.