Rh2BG117900

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000495
Physical Location & Seq
Forward (+)
10024795 .. 10025741
947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG117900.1

Sequence Viewer

Length: 453 bp
ATGTATGGAGCCTATATAGGCGGTGGCTCAACCCCTTCTCCAACCCCAAGTGGTGGTGGCGGCGATGTTGCCAGCCTCGTTAGCTCCTCTCTTTTTGATCAAATGCTTGAGTATCGCAACGATGCACGGTGCAAGGGCAACGGTTTCTACAAGTATGATGCTTTCATTGCTGCTGCTCGATCATTCCCTGGATTTGGCACCACTGGAGATGATGCAATGGGCAAGAGGAAGATCGCTGCTTTCTTAGCTCAAACCTCTCATGAGACCACTAGGGTTGGTGAGTTTCTGTATGTGTGGTTGTTCATTGGCCGGGTTAGTTTCGATTGGAATATCAGTGACTCTTTGTATGGTAGAAAGGGTGGGATTACAAGCAGTGGCTCTGTCATGGATTTTCTGAGAGGCCCAAAGCCTTGGCCTGAGGAGATGGTGAGAACTTATGAGGAACTGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

150

Amino Acids

16.33

Weight (kDa)

5.8

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 26 - 90 8e-28 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 53
AciI CCGC 2 cut(s) 21, 60
AcoI YGGCCR 1 cut(s) 307
AfiI CCNNNNNNNGG 2 cut(s) 53, 194
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 2 cut(s) 84, 248
AluI AGCT 2 cut(s) 84, 248
Alw26I GTCTC 1 cut(s) 257
AoxI GGCC 3 cut(s) 307, 400, 413
ApeKI GCWGC 3 cut(s) 170, 173, 236
AspS9I GGNCC 1 cut(s) 401
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 290, 439
AxyI CCTNAGG 1 cut(s) 417
BanI GGYRCC 1 cut(s) 197
BbvI GCAGC 3 cut(s) 157, 160, 223
BccI CCATC 1 cut(s) 418
BciT130I CCWGG 1 cut(s) 189
BclI TGATCA 1 cut(s) 97
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 1 cut(s) 270
BisI GCNGC 4 cut(s) 61, 171, 174, 237
BlsI GCNGC 4 cut(s) 62, 172, 175, 238
Bme1390I CCNGG 2 cut(s) 189, 311
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 2 cut(s) 10, 199
BmrFI CCNGG 2 cut(s) 189, 311
BmsI GCATC 3 cut(s) 112, 148, 202
BpmI CTGGAG 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 311
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 187, 410
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 194
Bse1I ACTGG 1 cut(s) 208
Bse21I CCTNAGG 1 cut(s) 417
Bse3DI GCAATG 2 cut(s) 165, 222
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 2 cut(s) 187, 410
BseLI CCNNNNNNNGG 2 cut(s) 53, 194
BseMI GCAATG 2 cut(s) 165, 222
BseMII CTCAG 2 cut(s) 386, 408
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 2 cut(s) 76, 434
BseXI GCAGC 3 cut(s) 157, 160, 223
BshFI GGCC 3 cut(s) 309, 402, 415
BshNI GGYRCC 1 cut(s) 197
BsiSI CCGG 1 cut(s) 310
BslI CCNNNNNNNGG 2 cut(s) 53, 194
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 3 cut(s) 309, 402, 415
Bso31I GGTCTC 1 cut(s) 257
Bsp143I GATC 3 cut(s) 97, 179, 231
BspACI CCGC 2 cut(s) 21, 60
BspANI GGCC 3 cut(s) 309, 402, 415
BspCNI CTCAG 2 cut(s) 387, 409
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 10, 199
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 257
BsrDI GCAATG 2 cut(s) 165, 222
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 187, 410
BssMI GATC 3 cut(s) 97, 179, 231
BssT1I CCWWGG 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 3 cut(s) 129, 143, 447
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 3 cut(s) 244, 395, 417
BstKTI GATC 3 cut(s) 100, 182, 234
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 3 cut(s) 97, 179, 231
BstMWI GCNNNNNNNGC 3 cut(s) 81, 167, 245
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 187, 309
BstV1I GCAGC 3 cut(s) 157, 160, 223
BstXI CCANNNNNNTGG 1 cut(s) 411
Bsu36I CCTNAGG 1 cut(s) 417
BsuRI GGCC 3 cut(s) 309, 402, 415
BtgZI GCGATG 1 cut(s) 78
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 3 cut(s) 201, 340, 379
Cac8I GCNNGC 1 cut(s) 73
CciI TCATGA 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 401
CspCI CAANNNNNGTGG 2 cut(s) 256, 291
CviAII CATG 2 cut(s) 260, 385
DdeI CTNAG 3 cut(s) 244, 395, 417
DpnI GATC 3 cut(s) 99, 181, 233
DpnII GATC 3 cut(s) 97, 179, 231
EaeI YGGCCR 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 410
Eco31I GGTCTC 1 cut(s) 257
Eco81I CCTNAGG 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 410
ErhI CCWWGG 1 cut(s) 410
FaeI CATG 2 cut(s) 263, 388
FaiI YATR 9 cut(s) 6, 15, 17, 156, 261, 291, 348, 386, 438
FatI CATG 2 cut(s) 259, 384
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 4 cut(s) 61, 171, 174, 237
Fsp4HI GCNGC 4 cut(s) 61, 171, 174, 237
FspBI CTAG 1 cut(s) 270
GluI GCNGC 4 cut(s) 61, 171, 174, 237
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 3 cut(s) 309, 402, 415
HapII CCGG 1 cut(s) 310
Hin1II CATG 2 cut(s) 263, 388
HinfI GANTC 1 cut(s) 338
HpaII CCGG 1 cut(s) 310
HphI GGTGA 2 cut(s) 290, 439
Hpy188I TCNGA 1 cut(s) 396
Hpy188III TCNNGA 1 cut(s) 260
HpyAV CCTTC 1 cut(s) 45
HpyCH4III ACNGT 3 cut(s) 129, 143, 447
HpyCH4V TGCA 3 cut(s) 125, 132, 215
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 167, 245
HpyF3I CTNAG 3 cut(s) 244, 395, 417
Hsp92II CATG 2 cut(s) 263, 388
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 3 cut(s) 97, 179, 231
LmnI GCTCC 2 cut(s) 8, 89
LpnPI CCDG 6 cut(s) 85, 174, 189, 201, 323, 429
Lsp1109I GCAGC 3 cut(s) 157, 160, 223
LweI GCATC 3 cut(s) 112, 148, 202
MaeI CTAG 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 335
MalI GATC 3 cut(s) 99, 181, 233
MboI GATC 3 cut(s) 97, 179, 231
MboII GAAGA 1 cut(s) 241
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 7 cut(s) 86, 97, 219, 265, 392, 412, 433
MspI CCGG 1 cut(s) 310
MspR9I CCNGG 2 cut(s) 189, 311
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 3 cut(s) 81, 167, 245
NciI CCSGG 1 cut(s) 311
NdeII GATC 3 cut(s) 97, 179, 231
NlaIII CATG 2 cut(s) 263, 388
NlaIV GGNNCC 2 cut(s) 10, 199
NmuCI GTSAC 1 cut(s) 335
PagI TCATGA 1 cut(s) 259
PflMI CCANNNNNTGG 1 cut(s) 53
PkrI GCNGC 4 cut(s) 62, 172, 175, 238
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 10, 199
PspPI GGNCC 1 cut(s) 401
SatI GCNGC 4 cut(s) 61, 171, 174, 237
Sau3AI GATC 3 cut(s) 97, 179, 231
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 2 cut(s) 189, 311
SetI ASST 3 cut(s) 86, 250, 257
SfaNI GCATC 3 cut(s) 112, 148, 202
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SsiI CCGC 2 cut(s) 21, 60
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 2 cut(s) 187, 309
StyI CCWWGG 1 cut(s) 410
TaaI ACNGT 3 cut(s) 129, 143, 447
TaqI TCGA 2 cut(s) 178, 321
TauI GCSGC 1 cut(s) 63
TscAI CASTG 3 cut(s) 208, 340, 379
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 3 cut(s) 170, 173, 236
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 154, 292
TspRI CASTG 3 cut(s) 208, 340, 379
Van91I CCANNNNNTGG 1 cut(s) 53
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.