FvH4_1g10641

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000495
Physical Location & Seq
Forward (+)
5823481 .. 5824801
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10641.t2

Sequence Viewer

Length: 801 bp
ATGAAGTTTCATACTCTTATCATCTTCTCCCTGACTTTGGTGATTGGGGCATCGGCAGAGCAATGTGGGAGGCAAGCCGGAGGGGCAACGTGTCCAAATCGGCTCTGTTGCAGCCAATTTGGGTATTGTGGCAACACAGGCGAATACTGTGGAACTGGTTGCCAAAGCCAATGTAGCTCTGGAGGTGGTGGCTCAACCCCGACACCAACCCCAAGTGGTGGTGATGTTAGCAGTATCATTAGCGCTTCTCTCTTTGATCAAATGCTCAAGTACCGAAACGATGGCCGGTGCAAAAGTAACGGGTTCTATAAGTATGATGCTTTCATTACTGCTGCCCGATCCTTCAATGGGTTTGGTACTACTGGAGATGTTGCTACACGCAAGAAGGAAATAGCTGCTTTCTTGGGTCAAACGTCACATGAGACTACTGGTCACAACTACAACTACGCTCAAGCGGGTCAAGCAATCGGTGTGGATCTGATAAATAACCCGGACCTAGTGGCCACAGACCCGGTTGTATCATTCAAGACAGCAGTATGGTTCTGGATGACCCCTCAAGGAAACAAACCATCAAGCCACGACGTTATCATCGGACGTTGGAACCCATCTAGTGCAGACAGAGCGGCGGGTCGGGTTCCCGGGTATGGTGTGATCACTAACATAGTGAATGGCGCACTTGAGTGTGGACGTGGTGCAGATGCTAGGGTGGCGGATCGGATCGGGTTCTACAGGAGGTACTGTGACATATTTGGAGTCAGCCCTGGGGATAACTTGGATTGTTATAACCAAAGATCGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

267

Amino Acids

28.34

Weight (kDa)

8.23

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chitin_bind_1 PF00187 21 - 58 6.3e-14 Chitin recognition protein
Glyco_hydro_19 PF00182 79 - 309 4.6e-132 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 783
AccB7I CCANNNNNTGG 1 cut(s) 218
AccBSI CCGCTC 1 cut(s) 623
AciI CCGC 4 cut(s) 455, 623, 626, 710
AclWI GGATC 4 cut(s) 333, 483, 720, 725
AcoI YGGCCR 2 cut(s) 283, 501
AfaI GTAC 3 cut(s) 272, 358, 737
AfeI AGCGCT 1 cut(s) 244
AfiI CCNNNNNNNGG 4 cut(s) 37, 218, 348, 644
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 2 cut(s) 346, 526
AhdI GACNNNNNGTC 1 cut(s) 429
AjiI CACGTC 1 cut(s) 689
AjnI CCWGG 1 cut(s) 760
AleI CACNNNNGTG 1 cut(s) 679
AluBI AGCT 2 cut(s) 177, 395
AluI AGCT 2 cut(s) 177, 395
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 4 cut(s) 333, 483, 720, 725
Ama87I CYCGRG 1 cut(s) 638
Aor51HI AGCGCT 1 cut(s) 244
AoxI GGCC 2 cut(s) 283, 501
ApeKI GCWGC 3 cut(s) 111, 332, 395
AspLEI GCGC 2 cut(s) 245, 674
AspS9I GGNCC 1 cut(s) 493
AsuC2I CCSGG 4 cut(s) 491, 512, 639, 640
AsuHPI GGTGA 2 cut(s) 52, 233
AvaI CYCGRG 1 cut(s) 638
AvaII GGWCC 1 cut(s) 493
BalI TGGCCA 1 cut(s) 503
BbvI GCAGC 3 cut(s) 123, 319, 382
BccI CCATC 3 cut(s) 275, 577, 613
BciT130I CCWGG 1 cut(s) 762
BclI TGATCA 2 cut(s) 256, 651
BcnI CCSGG 4 cut(s) 491, 512, 639, 640
BcoDI GTCTC 1 cut(s) 416
BfaI CTAG 3 cut(s) 497, 609, 702
BfmI CTRYAG 1 cut(s) 727
BfoI RGCGCY 1 cut(s) 246
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 4 cut(s) 112, 333, 396, 624
BlsI GCNGC 4 cut(s) 113, 334, 397, 625
Bme1390I CCNGG 5 cut(s) 491, 512, 639, 640, 762
Bme18I GGWCC 1 cut(s) 493
BmeRI GACNNNNNGTC 1 cut(s) 429
BmeT110I CYCGRG 1 cut(s) 638
BmgBI CACGTC 1 cut(s) 689
BmgT120I GGNCC 1 cut(s) 493
BmiI GGNNCC 2 cut(s) 602, 636
BmrFI CCNGG 5 cut(s) 491, 512, 639, 640, 762
BmsI GCATC 3 cut(s) 59, 307, 688
BpmI CTGGAG 2 cut(s) 201, 384
BpuEI CTTGAG 4 cut(s) 251, 435, 540, 698
BpuMI CCSGG 4 cut(s) 491, 512, 639, 640
BsaJI CCNNGG 3 cut(s) 638, 760, 761
BsaXI ACNNNNNCTCC 2 cut(s) 724, 754
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 218, 348, 644
Bse118I RCCGGY 1 cut(s) 285
Bse1I ACTGG 3 cut(s) 160, 367, 433
Bse3DI GCAATG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 762
BseDI CCNNGG 3 cut(s) 638, 760, 761
BseGI GGATG 1 cut(s) 552
BseLI CCNNNNNNNGG 4 cut(s) 37, 218, 348, 644
BseMI GCAATG 1 cut(s) 68
BseNI ACTGG 3 cut(s) 160, 367, 433
BseXI GCAGC 3 cut(s) 123, 319, 382
BsgI GTGCAG 2 cut(s) 633, 714
BshFI GGCC 2 cut(s) 285, 503
BsiHKCI CYCGRG 1 cut(s) 638
BsiSI CCGG 5 cut(s) 78, 286, 491, 512, 639
BslI CCNNNNNNNGG 4 cut(s) 37, 218, 348, 644
BsmAI GTCTC 1 cut(s) 416
BsnI GGCC 2 cut(s) 285, 503
BsoBI CYCGRG 1 cut(s) 638
Bsp143I GATC 7 cut(s) 256, 338, 475, 651, 712, 717, 791
BspACI CCGC 4 cut(s) 455, 623, 626, 710
BspANI GGCC 2 cut(s) 285, 503
BspLI GGNNCC 2 cut(s) 602, 636
BspPI GGATC 4 cut(s) 333, 483, 720, 725
BsrBI CCGCTC 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 285
BsrI ACTGG 3 cut(s) 160, 367, 433
BssAI RCCGGY 1 cut(s) 285
BssECI CCNNGG 3 cut(s) 638, 760, 761
BssMI GATC 7 cut(s) 256, 338, 475, 651, 712, 717, 791
Bst2UI CCWGG 1 cut(s) 762
Bst4CI ACNGT 2 cut(s) 149, 740
BstC8I GCNNGC 1 cut(s) 75
BstF5I GGATG 1 cut(s) 552
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 2 cut(s) 245, 674
BstKTI GATC 7 cut(s) 259, 341, 478, 654, 715, 720, 794
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 7 cut(s) 256, 338, 475, 651, 712, 717, 791
BstMWI GCNNNNNNNGC 6 cut(s) 83, 138, 174, 461, 620, 707
BstNI CCWGG 1 cut(s) 762
BstSCI CCNGG 5 cut(s) 489, 510, 637, 638, 760
BstSFI CTRYAG 1 cut(s) 727
BstV1I GCAGC 3 cut(s) 123, 319, 382
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BsuRI GGCC 2 cut(s) 285, 503
BtrI CACGTC 1 cut(s) 689
BtsCI GGATG 1 cut(s) 552
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 2 cut(s) 245, 674
Cfr10I RCCGGY 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 493
Cfr9I CCCGGG 1 cut(s) 638
Csp6I GTAC 3 cut(s) 271, 357, 736
CspCI CAANNNNNGTGG 2 cut(s) 453, 488
CviAII CATG 1 cut(s) 419
CviQI GTAC 3 cut(s) 271, 357, 736
DpnI GATC 7 cut(s) 258, 340, 477, 653, 714, 719, 793
DpnII GATC 7 cut(s) 256, 338, 475, 651, 712, 717, 791
DriI GACNNNNNGTC 1 cut(s) 429
EaeI YGGCCR 2 cut(s) 283, 501
Eam1105I GACNNNNNGTC 1 cut(s) 429
EciI GGCGGA 1 cut(s) 725
Eco47I GGWCC 1 cut(s) 493
Eco47III AGCGCT 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 638
EcoRII CCWGG 1 cut(s) 760
FaeI CATG 1 cut(s) 422
FaiI YATR 9 cut(s) 12, 309, 315, 420, 538, 645, 662, 746, 783
FatI CATG 1 cut(s) 418
FauI CCCGC 2 cut(s) 448, 619
FbaI TGATCA 2 cut(s) 256, 651
Fnu4HI GCNGC 4 cut(s) 112, 333, 396, 624
FokI GGATG 1 cut(s) 559
Fsp4HI GCNGC 4 cut(s) 112, 333, 396, 624
FspBI CTAG 3 cut(s) 497, 609, 702
GlaI GCGC 2 cut(s) 244, 673
GluI GCNGC 4 cut(s) 112, 333, 396, 624
GsuI CTGGAG 2 cut(s) 201, 384
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 2 cut(s) 285, 503
HapII CCGG 5 cut(s) 78, 286, 491, 512, 639
HhaI GCGC 2 cut(s) 245, 674
Hin1II CATG 1 cut(s) 422
Hin6I GCGC 2 cut(s) 243, 672
HinP1I GCGC 2 cut(s) 243, 672
HinfI GANTC 1 cut(s) 753
HpaII CCGG 5 cut(s) 78, 286, 491, 512, 639
HphI GGTGA 2 cut(s) 52, 233
Hpy166II GTNNAC 1 cut(s) 686
Hpy188I TCNGA 3 cut(s) 480, 593, 717
Hpy188III TCNNGA 3 cut(s) 180, 526, 544
Hpy8I GTNNAC 1 cut(s) 686
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 2 cut(s) 352, 379
HpyCH4III ACNGT 2 cut(s) 149, 740
HpyCH4IV ACGT 5 cut(s) 89, 413, 582, 595, 688
HpyCH4V TGCA 4 cut(s) 111, 291, 614, 695
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 138, 174, 461, 620, 707
HpySE526I ACGT 5 cut(s) 89, 413, 582, 595, 688
Hsp92II CATG 1 cut(s) 422
HspAI GCGC 2 cut(s) 243, 672
Ksp22I TGATCA 2 cut(s) 256, 651
Kzo9I GATC 7 cut(s) 256, 338, 475, 651, 712, 717, 791
Lsp1109I GCAGC 3 cut(s) 123, 319, 382
LweI GCATC 3 cut(s) 59, 307, 688
MaeI CTAG 3 cut(s) 497, 609, 702
MaeII ACGT 5 cut(s) 89, 413, 582, 595, 688
MaeIII GTNAC 4 cut(s) 296, 414, 431, 740
MalI GATC 7 cut(s) 258, 340, 477, 653, 714, 719, 793
MbiI CCGCTC 1 cut(s) 623
MboI GATC 7 cut(s) 256, 338, 475, 651, 712, 717, 791
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 475
MlsI TGGCCA 1 cut(s) 503
MluCI AATT 1 cut(s) 116
MluNI TGGCCA 1 cut(s) 503
MlyI GAGTC 1 cut(s) 762
MmeI TCCRAC 1 cut(s) 578
MnlI CCTC 5 cut(s) 63, 74, 176, 564, 726
Mox20I TGGCCA 1 cut(s) 503
MscI TGGCCA 1 cut(s) 503
MslI CAYNNNNRTG 1 cut(s) 679
Msp20I TGGCCA 1 cut(s) 503
MspI CCGG 5 cut(s) 78, 286, 491, 512, 639
MspR9I CCNGG 5 cut(s) 491, 512, 639, 640, 762
MvaI CCWGG 1 cut(s) 762
MwoI GCNNNNNNNGC 6 cut(s) 83, 138, 174, 461, 620, 707
NciI CCSGG 4 cut(s) 491, 512, 639, 640
NdeII GATC 7 cut(s) 256, 338, 475, 651, 712, 717, 791
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 2 cut(s) 602, 636
NmuCI GTSAC 3 cut(s) 414, 431, 740
OliI CACNNNNGTG 1 cut(s) 679
PasI CCCWGGG 1 cut(s) 761
PflMI CCANNNNNTGG 1 cut(s) 218
PkrI GCNGC 4 cut(s) 113, 334, 397, 625
PleI GAGTC 1 cut(s) 761
PpsI GAGTC 1 cut(s) 761
PsiI TTATAA 1 cut(s) 783
Psp6I CCWGG 1 cut(s) 760
PspGI CCWGG 1 cut(s) 760
PspN4I GGNNCC 2 cut(s) 602, 636
PspPI GGNCC 1 cut(s) 493
PsuI RGATCY 1 cut(s) 475
RsaI GTAC 3 cut(s) 272, 358, 737
RsaNI GTAC 3 cut(s) 271, 357, 736
RseI CAYNNNNRTG 1 cut(s) 679
SatI GCNGC 4 cut(s) 112, 333, 396, 624
Sau3AI GATC 7 cut(s) 256, 338, 475, 651, 712, 717, 791
Sau96I GGNCC 1 cut(s) 493
SchI GAGTC 1 cut(s) 762
ScrFI CCNGG 5 cut(s) 491, 512, 639, 640, 762
SfaNI GCATC 3 cut(s) 59, 307, 688
SfcI CTRYAG 1 cut(s) 727
SinI GGWCC 1 cut(s) 493
SmaI CCCGGG 1 cut(s) 640
SmiMI CAYNNNNRTG 1 cut(s) 679
SmlI CTYRAG 4 cut(s) 266, 450, 555, 677
SmoI CTYRAG 4 cut(s) 266, 450, 555, 677
Sse9I AATT 1 cut(s) 116
SsiI CCGC 4 cut(s) 455, 623, 626, 710
SspMI CTAG 3 cut(s) 497, 609, 702
StyD4I CCNGG 5 cut(s) 489, 510, 637, 638, 760
TaaI ACNGT 2 cut(s) 149, 740
TaiI ACGT 5 cut(s) 92, 416, 585, 598, 691
TasI AATT 1 cut(s) 116
TauI GCSGC 1 cut(s) 626
TseFI GTSAC 3 cut(s) 414, 431, 740
TseI GCWGC 3 cut(s) 111, 332, 395
Tsp45I GTSAC 3 cut(s) 414, 431, 740
TspDTI ATGAA 2 cut(s) 17, 313
TspMI CCCGGG 1 cut(s) 638
Van91I CCANNNNNTGG 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 493
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
XmaI CCCGGG 1 cut(s) 638
XspI CTAG 3 cut(s) 497, 609, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.