RLG00000016734

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000495
Physical Location & Seq
Forward (+)
9536625 .. 9540723
4099 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016734

Sequence Viewer

Length: 756 bp
ATGGCCCAAAGCCCAACTCAGCTTAAATTGAGCCCAAAATTGATTCAAATCCTCCTCGAAATTCTGGCCAAGCTGCTGGAGCCGGATCAAAAGCCGAGCTCGCTAGTCTGCAAGCGGTGGCTGAGCCTCCAGGGCCAGCTTGTGAGGTCCGTGAAGGTGAAAGACTGGAGCTTTGTGGAATCGGGTCGGGCTATTTCAAGCTTTGTGGAATCGAACGGCGACGAGAACGTTGGAGTGGCTGGAGCTCCGACTGGAGCTTCTTCGTCGTCTTCAGGCGATGTGGCTACCCAGAAAAAAGAGCTTGCTGCTTTCTTGGGTCAAACCTCTCACGAAACCACTGGAGGATGGCCAAGTGCACCAGATGGTCCTTATGCTTGGGGATATTGCTTTATCAGGGAAAACAACCAAGACGTGTACTGCACTCCATCAGCCCAATATCCATGTGCTGCCGGCAAAAAATATTACGGCCGAGGACCAATCCAACTTACTCACAACTGCAACTATGCTCAAGCGGGTAGAGCAATCGGAGTGGATCTGATAAACAATCCAGATCTAGTAGCCACAGACCCGGTTGTATCATTCAAGACAGCTATATGGTTTTGGATGACCCCTCAAGGAAACAAACCATCAAGTCACGACGTCATTACCGGTCGTTGGAATCCGTCTGCTGCAGACAGATCGGCGGGTCGGGTCCCTGGATATGGAGTGATTAAAAACATAATTAACGGCGGACTTGAATGTGTAGAATCGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

252

Amino Acids

26.97

Weight (kDa)

8.17

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 80 - 248 8e-89 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 642
AciI CCGC 4 cut(s) 115, 512, 683, 729
AclI AACGTT 1 cut(s) 228
AclWI GGATC 2 cut(s) 93, 540
AcoI YGGCCR 3 cut(s) 66, 347, 466
AcsI RAATTY 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 255
AcyI GRCGYC 1 cut(s) 639
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 2 cut(s) 654, 701
AflIII ACRYGT 1 cut(s) 411
AgeI ACCGGT 1 cut(s) 647
AgsI TTSAA 4 cut(s) 47, 198, 583, 737
AjiI CACGTC 1 cut(s) 412
AjnI CCWGG 2 cut(s) 129, 694
Alw21I GWGCWC 3 cut(s) 101, 247, 358
Alw44I GTGCAC 1 cut(s) 354
AlwI GGATC 2 cut(s) 93, 540
AoxI GGCC 5 cut(s) 3, 66, 133, 347, 466
ApaLI GTGCAC 1 cut(s) 354
ApeKI GCWGC 4 cut(s) 73, 305, 446, 668
ApoI RAATTY 1 cut(s) 60
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AsiGI ACCGGT 1 cut(s) 647
AspS9I GGNCC 6 cut(s) 4, 133, 147, 365, 473, 691
AsuC2I CCSGG 1 cut(s) 569
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 4 cut(s) 147, 365, 473, 691
BaeGI GKGCMC 1 cut(s) 358
BalI TGGCCA 2 cut(s) 68, 349
BanII GRGCYC 3 cut(s) 35, 101, 247
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 3 cut(s) 101, 247, 358
BbvI GCAGC 4 cut(s) 60, 292, 433, 655
BccI CCATC 4 cut(s) 339, 356, 433, 634
BceAI ACGGC 3 cut(s) 232, 481, 742
BcgI CGANNNNNNTGC 2 cut(s) 660, 694
BciT130I CCWGG 2 cut(s) 131, 696
BcnI CCSGG 1 cut(s) 569
BfaI CTAG 2 cut(s) 104, 554
BfmI CTRYAG 1 cut(s) 669
BglI GCCNNNNNGGC 1 cut(s) 132
BglII AGATCT 1 cut(s) 550
BisI GCNGC 4 cut(s) 74, 306, 447, 669
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 4 cut(s) 75, 307, 448, 670
Bme1390I CCNGG 3 cut(s) 131, 569, 696
Bme18I GGWCC 4 cut(s) 147, 365, 473, 691
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 6 cut(s) 4, 133, 147, 365, 473, 691
BmiI GGNNCC 3 cut(s) 81, 692, 693
BmrFI CCNGG 3 cut(s) 131, 569, 696
BpiI GAAGAC 1 cut(s) 261
BpmI CTGGAG 6 cut(s) 98, 113, 187, 261, 273, 360
Bpu1102I GCTNAGC 1 cut(s) 122
BpuEI CTTGAG 2 cut(s) 492, 597
BpuMI CCSGG 1 cut(s) 569
BsaBI GATNNNNATC 1 cut(s) 47
BsaHI GRCGYC 1 cut(s) 639
BsaJI CCNNGG 3 cut(s) 130, 469, 694
BsaWI WCCGGW 1 cut(s) 647
Bsc4I CCNNNNNNNGG 2 cut(s) 654, 701
Bse118I RCCGGY 2 cut(s) 449, 647
Bse1I ACTGG 3 cut(s) 170, 256, 343
Bse8I GATNNNNATC 1 cut(s) 47
BseBI CCWGG 2 cut(s) 131, 696
BseDI CCNNGG 3 cut(s) 130, 469, 694
BseGI GGATG 2 cut(s) 350, 609
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 654, 701
BseMII CTCAG 2 cut(s) 32, 113
BseNI ACTGG 3 cut(s) 170, 256, 343
BseRI GAGGAG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 358
BseX3I CGGCCG 1 cut(s) 466
BseXI GCAGC 4 cut(s) 60, 292, 433, 655
BsgI GTGCAG 1 cut(s) 403
Bsh1285I CGRYCG 2 cut(s) 469, 652
BshFI GGCC 5 cut(s) 5, 68, 135, 349, 468
BshTI ACCGGT 1 cut(s) 647
BsiEI CGRYCG 2 cut(s) 469, 652
BsiHKAI GWGCWC 3 cut(s) 101, 247, 358
BsiSI CCGG 4 cut(s) 83, 450, 569, 648
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 2 cut(s) 654, 701
BsmFI GGGAC 1 cut(s) 677
BsnI GGCC 5 cut(s) 5, 68, 135, 349, 468
Bsp1286I GDGCHC 4 cut(s) 35, 101, 247, 358
Bsp143I GATC 4 cut(s) 85, 532, 550, 677
Bsp1720I GCTNAGC 1 cut(s) 122
BspACI CCGC 4 cut(s) 115, 512, 683, 729
BspANI GGCC 5 cut(s) 5, 68, 135, 349, 468
BspCNI CTCAG 2 cut(s) 31, 114
BspLI GGNNCC 3 cut(s) 81, 692, 693
BspMAI CTGCAG 1 cut(s) 673
BspPI GGATC 2 cut(s) 93, 540
BsrFI RCCGGY 2 cut(s) 449, 647
BsrI ACTGG 3 cut(s) 170, 256, 343
BssAI RCCGGY 2 cut(s) 449, 647
BssECI CCNNGG 3 cut(s) 130, 469, 694
BssMI GATC 4 cut(s) 85, 532, 550, 677
BssNI GRCGYC 1 cut(s) 639
Bst2UI CCWGG 2 cut(s) 131, 696
BstACI GRCGYC 1 cut(s) 639
BstC8I GCNNGC 5 cut(s) 101, 113, 137, 303, 451
BstDEI CTNAG 2 cut(s) 18, 122
BstF5I GGATG 2 cut(s) 350, 609
BstKTI GATC 4 cut(s) 88, 535, 553, 680
BstMBI GATC 4 cut(s) 85, 532, 550, 677
BstMCI CGRYCG 2 cut(s) 469, 652
BstMWI GCNNNNNNNGC 4 cut(s) 79, 100, 132, 518
BstNI CCWGG 2 cut(s) 131, 696
BstSCI CCNGG 3 cut(s) 129, 567, 694
BstSFI CTRYAG 1 cut(s) 669
BstSLI GKGCMC 1 cut(s) 358
BstV1I GCAGC 4 cut(s) 60, 292, 433, 655
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 2 cut(s) 532, 550
BstXI CCANNNNNNTGG 1 cut(s) 76
BstYI RGATCY 2 cut(s) 532, 550
BstZI CGGCCG 1 cut(s) 466
BsuRI GGCC 5 cut(s) 5, 68, 135, 349, 468
BtgZI GCGATG 1 cut(s) 291
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 2 cut(s) 350, 609
BtsIMutI CAGTG 1 cut(s) 336
Cac8I GCNNGC 5 cut(s) 101, 113, 137, 303, 451
Cfr10I RCCGGY 2 cut(s) 449, 647
Cfr13I GGNCC 6 cut(s) 4, 133, 147, 365, 473, 691
Csp6I GTAC 1 cut(s) 415
CspAI ACCGGT 1 cut(s) 647
CspCI CAANNNNNGTGG 4 cut(s) 186, 221, 510, 545
CviAII CATG 1 cut(s) 441
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 2 cut(s) 18, 122
DpnI GATC 4 cut(s) 87, 534, 552, 679
DpnII GATC 4 cut(s) 85, 532, 550, 677
EaeI YGGCCR 3 cut(s) 66, 347, 466
EagI CGGCCG 1 cut(s) 466
EciI GGCGGA 1 cut(s) 744
Ecl136II GAGCTC 2 cut(s) 99, 245
EclXI CGGCCG 1 cut(s) 466
Eco24I GRGCYC 3 cut(s) 35, 101, 247
Eco47I GGWCC 4 cut(s) 147, 365, 473, 691
Eco52I CGGCCG 1 cut(s) 466
Eco53kI GAGCTC 2 cut(s) 99, 245
Eco57I CTGAAG 1 cut(s) 255
EcoICRI GAGCTC 2 cut(s) 99, 245
EcoO109I RGGNCCY 1 cut(s) 691
EcoRII CCWGG 2 cut(s) 129, 694
EcoT38I GRGCYC 3 cut(s) 35, 101, 247
FaeI CATG 1 cut(s) 444
FaiI YATR 7 cut(s) 372, 442, 504, 593, 595, 702, 719
FaqI GGGAC 1 cut(s) 677
FatI CATG 1 cut(s) 440
FauI CCCGC 2 cut(s) 505, 676
Fnu4HI GCNGC 4 cut(s) 74, 306, 447, 669
FokI GGATG 2 cut(s) 357, 616
FriOI GRGCYC 3 cut(s) 35, 101, 247
Fsp4HI GCNGC 4 cut(s) 74, 306, 447, 669
FspBI CTAG 2 cut(s) 104, 554
GluI GCNGC 4 cut(s) 74, 306, 447, 669
GsuI CTGGAG 6 cut(s) 98, 113, 187, 261, 273, 360
HaeIII GGCC 5 cut(s) 5, 68, 135, 349, 468
HapII CCGG 4 cut(s) 83, 450, 569, 648
Hin1I GRCGYC 1 cut(s) 639
Hin1II CATG 1 cut(s) 444
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 5 cut(s) 43, 179, 209, 658, 746
HpaII CCGG 4 cut(s) 83, 450, 569, 648
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 2 cut(s) 356, 415
Hpy188I TCNGA 3 cut(s) 249, 527, 537
Hpy188III TCNNGA 4 cut(s) 329, 548, 583, 635
Hpy8I GTNNAC 2 cut(s) 356, 415
Hpy99I CGWCG 3 cut(s) 224, 268, 641
HpyAV CCTTC 1 cut(s) 148
HpyCH4IV ACGT 3 cut(s) 228, 411, 639
HpyCH4V TGCA 5 cut(s) 111, 356, 420, 498, 671
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 100, 132, 518
HpyF3I CTNAG 2 cut(s) 18, 122
HpySE526I ACGT 3 cut(s) 228, 411, 639
Hsp92I GRCGYC 1 cut(s) 639
Hsp92II CATG 1 cut(s) 444
KflI GGGWCCC 1 cut(s) 691
KroI GCCGGC 1 cut(s) 449
KroNI GCCGGC 1 cut(s) 451
Kzo9I GATC 4 cut(s) 85, 532, 550, 677
LmnI GCTCC 5 cut(s) 79, 168, 242, 250, 254
Lsp1109I GCAGC 4 cut(s) 60, 292, 433, 655
MaeI CTAG 2 cut(s) 104, 554
MaeII ACGT 3 cut(s) 228, 411, 639
MaeIII GTNAC 1 cut(s) 632
MalI GATC 4 cut(s) 87, 534, 552, 679
MboI GATC 4 cut(s) 85, 532, 550, 677
MboII GAAGA 2 cut(s) 252, 261
MflI RGATCY 2 cut(s) 532, 550
MhlI GDGCHC 4 cut(s) 35, 101, 247, 358
MlsI TGGCCA 2 cut(s) 68, 349
MluCI AATT 4 cut(s) 26, 38, 60, 720
MluNI TGGCCA 2 cut(s) 68, 349
MmeI TCCRAC 4 cut(s) 211, 272, 505, 635
MnlI CCTC 8 cut(s) 62, 65, 137, 138, 334, 335, 464, 621
Mox20I TGGCCA 2 cut(s) 68, 349
MroNI GCCGGC 1 cut(s) 449
MscI TGGCCA 2 cut(s) 68, 349
MseI TTAA 3 cut(s) 24, 711, 723
Msp20I TGGCCA 2 cut(s) 68, 349
MspI CCGG 4 cut(s) 83, 450, 569, 648
MspR9I CCNGG 3 cut(s) 131, 569, 696
MvaI CCWGG 2 cut(s) 131, 696
MwoI GCNNNNNNNGC 4 cut(s) 79, 100, 132, 518
NaeI GCCGGC 1 cut(s) 451
NciI CCSGG 1 cut(s) 569
NdeII GATC 4 cut(s) 85, 532, 550, 677
NgoMIV GCCGGC 1 cut(s) 449
NlaIII CATG 1 cut(s) 444
NlaIV GGNNCC 3 cut(s) 81, 692, 693
NmeAIII GCCGAG 2 cut(s) 120, 494
NmuCI GTSAC 1 cut(s) 632
PdiI GCCGGC 1 cut(s) 451
PfeI GAWTC 5 cut(s) 43, 179, 209, 658, 746
PinAI ACCGGT 1 cut(s) 647
PkrI GCNGC 4 cut(s) 75, 307, 448, 670
PpuMI RGGWCCY 1 cut(s) 691
Psp124BI GAGCTC 2 cut(s) 101, 247
Psp1406I AACGTT 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 691
Psp6I CCWGG 2 cut(s) 129, 694
PspGI CCWGG 2 cut(s) 129, 694
PspN4I GGNNCC 3 cut(s) 81, 692, 693
PspPI GGNCC 6 cut(s) 4, 133, 147, 365, 473, 691
PspPPI RGGWCCY 1 cut(s) 691
PstI CTGCAG 1 cut(s) 673
PsuI RGATCY 2 cut(s) 532, 550
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SacI GAGCTC 2 cut(s) 101, 247
SaqAI TTAA 3 cut(s) 24, 711, 723
SatI GCNGC 4 cut(s) 74, 306, 447, 669
Sau3AI GATC 4 cut(s) 85, 532, 550, 677
Sau96I GGNCC 6 cut(s) 4, 133, 147, 365, 473, 691
ScrFI CCNGG 3 cut(s) 131, 569, 696
SduI GDGCHC 4 cut(s) 35, 101, 247, 358
SfcI CTRYAG 1 cut(s) 669
SinI GGWCC 4 cut(s) 147, 365, 473, 691
SmlI CTYRAG 2 cut(s) 507, 612
SmoI CTYRAG 2 cut(s) 507, 612
Sse9I AATT 4 cut(s) 26, 38, 60, 720
SsiI CCGC 4 cut(s) 115, 512, 683, 729
SspI AATATT 1 cut(s) 461
SspMI CTAG 2 cut(s) 104, 554
SstI GAGCTC 2 cut(s) 101, 247
StyD4I CCNGG 3 cut(s) 129, 567, 694
TaiI ACGT 3 cut(s) 231, 414, 642
TaqI TCGA 2 cut(s) 57, 212
TasI AATT 4 cut(s) 26, 38, 60, 720
TatI WGTACW 1 cut(s) 414
TfiI GAWTC 5 cut(s) 43, 179, 209, 658, 746
Tru1I TTAA 3 cut(s) 24, 711, 723
Tru9I TTAA 3 cut(s) 24, 711, 723
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 632
TseI GCWGC 4 cut(s) 73, 305, 446, 668
Tsp45I GTSAC 1 cut(s) 632
TspGWI ACGGA 2 cut(s) 139, 651
TspRI CASTG 1 cut(s) 343
VneI GTGCAC 1 cut(s) 354
VpaK11BI GGWCC 4 cut(s) 147, 365, 473, 691
XapI RAATTY 1 cut(s) 60
XspI CTAG 2 cut(s) 104, 554
ZraI GACGTC 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.