RchiOBHm_Chr2g0097781

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000495
Physical Location & Seq
Forward (+)
10327487 .. 10329437
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47262

Sequence Viewer

Length: 588 bp
ATGAAAATGAAGCTACTTACCTTTATCATCGTTTCCCTCTCTTTGTTGCTAGGTATCTCCGCAGAACAATGCGGTAGACAAGCCGGTGGCGCCACCTGCCCGAATGGGCTATGTTGTATCAAATTTGGGTGGTGTGGCAGCACAGCCGAGCACTGCGGTGGCTCAACCCCTTCTCCAACCCCAAGTGGTGGTGGCGGCGATGTTTCCAACCTCGTTAGCTCCTCTCTTTTCGATCAAATGCTTAAGTATCGCAATGATGCACGGTGCAAGGGCAACGGTTTCTACAAGTATGATGCTTTCATTGCTGCTGCTCGATCATTCCCTGGATTTGGCACCACTGGAGATGATGCAATGGGCAAGAGGAAGATCACTGCTTTCTTAGCTCAAACCTTTCATGAGACCACTGGGGTTGGTGAGTTTCTGTATGTGTGGTTGTTCATTGGCCGGGTTAGTTTCGATTGGAATATCAGTGACTCTTTGTATGGTAGAAAGGGTGGGATTACAAGCAGTGGCTCTGTCATGGATTTTCTGAGAGACCCAAAGCCTTGGCCTGAGGAGATGGTGAGAACTTATGAGGAACTGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

195

Amino Acids

21.11

Weight (kDa)

7.51

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chitin_bind_1 PF00187 23 - 54 3.1e-11 Chitin recognition protein
Glyco_hydro_19 PF00182 71 - 137 4.7e-27 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 104
Acc36I ACCTGC 1 cut(s) 104
AccB1I GGYRCC 2 cut(s) 89, 332
AccB7I CCANNNNNTGG 1 cut(s) 188
AccI GTMKAC 1 cut(s) 76
AciI CCGC 4 cut(s) 60, 72, 156, 195
AcoI YGGCCR 1 cut(s) 442
AcsI RAATTY 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 90
AfiI CCNNNNNNNGG 2 cut(s) 188, 329
AflII CTTAAG 1 cut(s) 242
AjnI CCWGG 1 cut(s) 322
AleI CACNNNNGTG 1 cut(s) 156
AluBI AGCT 3 cut(s) 13, 219, 383
AluI AGCT 3 cut(s) 13, 219, 383
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 2 cut(s) 392, 528
AoxI GGCC 2 cut(s) 442, 548
ApeKI GCWGC 3 cut(s) 138, 305, 308
ApoI RAATTY 1 cut(s) 122
AspLEI GCGC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 2 cut(s) 425, 574
AxyI CCTNAGG 1 cut(s) 552
BanI GGYRCC 2 cut(s) 89, 332
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 3 cut(s) 150, 292, 295
BccI CCATC 1 cut(s) 553
BciT130I CCWGG 1 cut(s) 324
BcnI CCSGG 1 cut(s) 446
BcoDI GTCTC 2 cut(s) 392, 528
BfaI CTAG 1 cut(s) 50
BfoI RGCGCY 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 242
BfuAI ACCTGC 1 cut(s) 104
BisI GCNGC 4 cut(s) 139, 196, 306, 309
BlsI GCNGC 4 cut(s) 140, 197, 307, 310
Bme1390I CCNGG 2 cut(s) 324, 446
BmiI GGNNCC 2 cut(s) 91, 334
BmrFI CCNGG 2 cut(s) 324, 446
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 3 cut(s) 247, 283, 337
BmuI ACTGGG 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 360
BpuMI CCSGG 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 90
BsaI GGTCTC 2 cut(s) 392, 528
BsaJI CCNNGG 2 cut(s) 322, 545
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 329
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 343, 409
Bse21I CCTNAGG 1 cut(s) 552
Bse3DI GCAATG 3 cut(s) 259, 300, 357
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 322, 545
BseLI CCNNNNNNNGG 2 cut(s) 188, 329
BseMI GCAATG 3 cut(s) 259, 300, 357
BseMII CTCAG 2 cut(s) 521, 543
BseNI ACTGG 2 cut(s) 343, 409
BseRI GAGGAG 2 cut(s) 211, 569
BseXI GCAGC 3 cut(s) 150, 292, 295
BshFI GGCC 2 cut(s) 444, 550
BshNI GGYRCC 2 cut(s) 89, 332
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 2 cut(s) 84, 445
BslI CCNNNNNNNGG 2 cut(s) 188, 329
BsmAI GTCTC 2 cut(s) 392, 528
BsnI GGCC 2 cut(s) 444, 550
Bso31I GGTCTC 2 cut(s) 392, 528
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 3 cut(s) 232, 314, 366
BspACI CCGC 4 cut(s) 60, 72, 156, 195
BspANI GGCC 2 cut(s) 444, 550
BspCNI CTCAG 2 cut(s) 522, 544
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 2 cut(s) 91, 334
BspMI ACCTGC 1 cut(s) 104
BspT107I GGYRCC 2 cut(s) 89, 332
BspTI CTTAAG 1 cut(s) 242
BspTNI GGTCTC 2 cut(s) 392, 528
BsrDI GCAATG 3 cut(s) 259, 300, 357
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 2 cut(s) 343, 409
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 322, 545
BssMI GATC 3 cut(s) 232, 314, 366
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 545
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 3 cut(s) 264, 278, 582
BstACI GRCGYC 1 cut(s) 90
BstAFI CTTAAG 1 cut(s) 242
BstDEI CTNAG 3 cut(s) 379, 530, 552
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 3 cut(s) 235, 317, 369
BstMAI GTCTC 2 cut(s) 392, 528
BstMBI GATC 3 cut(s) 232, 314, 366
BstMWI GCNNNNNNNGC 4 cut(s) 89, 96, 302, 380
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 2 cut(s) 322, 444
BstV1I GCAGC 3 cut(s) 150, 292, 295
BstXI CCANNNNNNTGG 1 cut(s) 546
Bsu36I CCTNAGG 1 cut(s) 552
BsuRI GGCC 2 cut(s) 444, 550
BtgZI GCGATG 1 cut(s) 213
BtsI GCAGTG 3 cut(s) 151, 369, 514
BtsIMutI CAGTG 6 cut(s) 151, 336, 369, 402, 475, 514
BveI ACCTGC 1 cut(s) 104
CciI TCATGA 1 cut(s) 394
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 83
CspCI CAANNNNNGTGG 2 cut(s) 391, 426
CviAII CATG 2 cut(s) 395, 520
DdeI CTNAG 3 cut(s) 379, 530, 552
DinI GGCGCC 1 cut(s) 91
DpnI GATC 3 cut(s) 234, 316, 368
DpnII GATC 3 cut(s) 232, 314, 366
EaeI YGGCCR 1 cut(s) 442
Eco130I CCWWGG 1 cut(s) 545
Eco31I GGTCTC 2 cut(s) 392, 528
Eco81I CCTNAGG 1 cut(s) 552
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 545
EgeI GGCGCC 1 cut(s) 91
EheI GGCGCC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 545
FaeI CATG 2 cut(s) 398, 523
FaiI YATR 7 cut(s) 112, 291, 396, 426, 483, 521, 573
FatI CATG 2 cut(s) 394, 519
FblI GTMKAC 1 cut(s) 76
Fnu4HI GCNGC 4 cut(s) 139, 196, 306, 309
Fsp4HI GCNGC 4 cut(s) 139, 196, 306, 309
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 91
GluI GCNGC 4 cut(s) 139, 196, 306, 309
GsuI CTGGAG 1 cut(s) 360
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 2 cut(s) 444, 550
HapII CCGG 2 cut(s) 84, 445
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 2 cut(s) 398, 523
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 1 cut(s) 473
HpaII CCGG 2 cut(s) 84, 445
HphI GGTGA 2 cut(s) 425, 574
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 1 cut(s) 531
Hpy188III TCNNGA 1 cut(s) 395
Hpy8I GTNNAC 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 180
HpyCH4III ACNGT 3 cut(s) 264, 278, 582
HpyCH4V TGCA 3 cut(s) 260, 267, 350
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 96, 302, 380
HpyF3I CTNAG 3 cut(s) 379, 530, 552
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 2 cut(s) 398, 523
HspAI GCGC 1 cut(s) 90
KasI GGCGCC 1 cut(s) 89
Kzo9I GATC 3 cut(s) 232, 314, 366
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 8 cut(s) 97, 109, 309, 324, 336, 390, 458, 564
Lsp1109I GCAGC 3 cut(s) 150, 292, 295
LweI GCATC 3 cut(s) 247, 283, 337
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 470
MalI GATC 3 cut(s) 234, 316, 368
MboI GATC 3 cut(s) 232, 314, 366
MboII GAAGA 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 1 cut(s) 122
Mly113I GGCGCC 1 cut(s) 90
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 2 cut(s) 200, 231
MnlI CCTC 6 cut(s) 47, 221, 232, 354, 547, 568
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 156
MspCI CTTAAG 1 cut(s) 242
MspI CCGG 2 cut(s) 84, 445
MspR9I CCNGG 2 cut(s) 324, 446
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 4 cut(s) 89, 96, 302, 380
NarI GGCGCC 1 cut(s) 90
NciI CCSGG 1 cut(s) 446
NdeII GATC 3 cut(s) 232, 314, 366
NlaIII CATG 2 cut(s) 398, 523
NlaIV GGNNCC 2 cut(s) 91, 334
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 470
OliI CACNNNNGTG 1 cut(s) 156
PagI TCATGA 1 cut(s) 394
PaqCI CACCTGC 1 cut(s) 104
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 4 cut(s) 140, 197, 307, 310
PleI GAGTC 1 cut(s) 467
PluTI GGCGCC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 2 cut(s) 91, 334
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 4 cut(s) 139, 196, 306, 309
Sau3AI GATC 3 cut(s) 232, 314, 366
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 2 cut(s) 324, 446
SduI GDGCHC 1 cut(s) 153
SetI ASST 8 cut(s) 15, 23, 55, 98, 213, 221, 385, 392
SfaNI GCATC 3 cut(s) 247, 283, 337
SfoI GGCGCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 1 cut(s) 122
SsiI CCGC 4 cut(s) 60, 72, 156, 195
SspDI GGCGCC 1 cut(s) 89
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 2 cut(s) 322, 444
StyI CCWWGG 1 cut(s) 545
TaaI ACNGT 3 cut(s) 264, 278, 582
TaqI TCGA 3 cut(s) 231, 313, 456
TasI AATT 1 cut(s) 122
TauI GCSGC 1 cut(s) 198
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 6 cut(s) 158, 343, 376, 409, 475, 514
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 3 cut(s) 138, 305, 308
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 5 cut(s) 17, 23, 289, 383, 427
TspRI CASTG 6 cut(s) 158, 343, 376, 409, 475, 514
Van91I CCANNNNNTGG 1 cut(s) 188
Vha464I CTTAAG 1 cut(s) 242
XapI RAATTY 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 76
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.