Rmu_sc0000974.1_g000019

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000974.1
OG0000495
Physical Location & Seq
Forward (+)
93842 .. 94189
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000974.1_g000019.1.cds

Sequence Viewer

Length: 348 bp
atggtcaggcgggtaaagcaatcggagtcggatcagataaacaatccggacctagtggccacagacccggttgtttcattcaagacagcaatatggttttggatgactccacaatcaaacaaaccgtcaagccacgacgtcattaccggacgttggaacccatctgatgcagatatatcagggggtcgggtccctggatatggtgtgattactaacatcatgaatggcggacttgaatgtgggcatggtcaagatgataaggtggtggataggatcgggttctataggaggtacgcgggcatattgggagtgagccctggagacaacttagattgttgtaacccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

115

Amino Acids

12.58

Weight (kDa)

5.51

Isoelectric Point (pI)

58.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
AccII CGCG 1 cut(s) 296
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 3 cut(s) 10, 228, 296
AclWI GGATC 2 cut(s) 39, 281
AcoI YGGCCR 1 cut(s) 57
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 2 cut(s) 153, 200
AgsI TTSAA 2 cut(s) 82, 236
AjnI CCWGG 2 cut(s) 193, 316
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 2 cut(s) 39, 281
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 1 cut(s) 57
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
AspS9I GGNCC 2 cut(s) 49, 190
AsuC2I CCSGG 1 cut(s) 68
AvaII GGWCC 2 cut(s) 49, 190
BalI TGGCCA 1 cut(s) 59
BanII GRGCYC 1 cut(s) 317
BccI CCATC 1 cut(s) 169
BciT130I CCWGG 2 cut(s) 195, 318
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 283
Bme1390I CCNGG 3 cut(s) 68, 195, 318
Bme18I GGWCC 2 cut(s) 49, 190
BmgT120I GGNCC 2 cut(s) 49, 190
BmiI GGNNCC 3 cut(s) 158, 191, 192
BmrFI CCNGG 3 cut(s) 68, 195, 318
BmsI GCATC 1 cut(s) 157
BpmI CTGGAG 1 cut(s) 339
BpuMI CCSGG 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 193, 316
BsaWI WCCGGW 2 cut(s) 46, 146
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 200
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 2 cut(s) 195, 318
BseDI CCNNGG 2 cut(s) 193, 316
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 153, 200
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 1 cut(s) 59
BsiSI CCGG 3 cut(s) 47, 68, 147
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 2 cut(s) 153, 200
BsmAI GTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 317
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 2 cut(s) 31, 273
BspACI CCGC 3 cut(s) 10, 228, 296
BspANI GGCC 1 cut(s) 59
BspEI TCCGGA 1 cut(s) 46
BspFNI CGCG 1 cut(s) 296
BspHI TCATGA 1 cut(s) 219
BspLI GGNNCC 3 cut(s) 158, 191, 192
BspPI GGATC 2 cut(s) 39, 281
BssECI CCNNGG 2 cut(s) 193, 316
BssMI GATC 2 cut(s) 31, 273
BssNI GRCGYC 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 195, 318
Bst4CI ACNGT 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 1 cut(s) 328
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 1 cut(s) 296
BstKTI GATC 2 cut(s) 34, 276
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 2 cut(s) 31, 273
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 2 cut(s) 195, 318
BstSCI CCNGG 3 cut(s) 66, 193, 316
BstSFI CTRYAG 1 cut(s) 283
BstUI CGCG 1 cut(s) 296
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 298
CciI TCATGA 1 cut(s) 219
Cfr13I GGNCC 2 cut(s) 49, 190
Csp6I GTAC 1 cut(s) 292
CviAII CATG 2 cut(s) 220, 245
CviJI RGCY 3 cut(s) 59, 132, 315
CviKI_1 RGCY 3 cut(s) 59, 132, 315
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 1 cut(s) 328
DpnI GATC 2 cut(s) 33, 275
DpnII GATC 2 cut(s) 31, 273
EaeI YGGCCR 1 cut(s) 57
EciI GGCGGA 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 317
Eco47I GGWCC 2 cut(s) 49, 190
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 193, 316
EcoT38I GRGCYC 1 cut(s) 317
FaeI CATG 2 cut(s) 223, 248
FaiI YATR 7 cut(s) 94, 176, 201, 221, 246, 285, 302
FaqI GGGAC 1 cut(s) 176
FatI CATG 2 cut(s) 219, 244
FauI CCCGC 2 cut(s) 3, 289
FokI GGATG 1 cut(s) 115
FriOI GRGCYC 1 cut(s) 317
FspBI CTAG 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 1 cut(s) 59
HapII CCGG 3 cut(s) 47, 68, 147
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 2 cut(s) 223, 248
HinfI GANTC 2 cut(s) 26, 106
HpaII CCGG 3 cut(s) 47, 68, 147
Hpy188I TCNGA 4 cut(s) 25, 31, 36, 166
Hpy188III TCNNGA 4 cut(s) 47, 82, 220, 251
Hpy99I CGWCG 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 2 cut(s) 138, 151
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 328
HpySE526I ACGT 2 cut(s) 138, 151
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 2 cut(s) 223, 248
KflI GGGWCCC 1 cut(s) 190
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 2 cut(s) 31, 273
LpnPI CCDG 8 cut(s) 60, 81, 160, 165, 180, 207, 303, 330
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 53
MaeII ACGT 2 cut(s) 138, 151
MaeIII GTNAC 1 cut(s) 338
MalI GATC 2 cut(s) 33, 275
MboI GATC 2 cut(s) 31, 273
MhlI GDGCHC 1 cut(s) 317
MlsI TGGCCA 1 cut(s) 59
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 2 cut(s) 35, 100
MmeI TCCRAC 2 cut(s) 9, 134
MnlI CCTC 1 cut(s) 282
Mox20I TGGCCA 1 cut(s) 59
MroI TCCGGA 1 cut(s) 46
MscI TGGCCA 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 3 cut(s) 47, 68, 147
MspR9I CCNGG 3 cut(s) 68, 195, 318
MvaI CCWGG 2 cut(s) 195, 318
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 16
NciI CCSGG 1 cut(s) 68
NdeII GATC 2 cut(s) 31, 273
NlaIII CATG 2 cut(s) 223, 248
NlaIV GGNNCC 3 cut(s) 158, 191, 192
PagI TCATGA 1 cut(s) 219
PleI GAGTC 2 cut(s) 34, 100
PpsI GAGTC 2 cut(s) 34, 100
PpuMI RGGWCCY 1 cut(s) 190
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 193, 316
PspGI CCWGG 2 cut(s) 193, 316
PspN4I GGNNCC 3 cut(s) 158, 191, 192
PspPI GGNCC 2 cut(s) 49, 190
PspPPI RGGWCCY 1 cut(s) 190
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
Sau3AI GATC 2 cut(s) 31, 273
Sau96I GGNCC 2 cut(s) 49, 190
SchI GAGTC 2 cut(s) 35, 100
ScrFI CCNGG 3 cut(s) 68, 195, 318
SduI GDGCHC 1 cut(s) 317
SetI ASST 5 cut(s) 54, 141, 154, 264, 293
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 283
SinI GGWCC 2 cut(s) 49, 190
SsiI CCGC 3 cut(s) 10, 228, 296
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 3 cut(s) 66, 193, 316
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 2 cut(s) 141, 154
TspDTI ATGAA 2 cut(s) 66, 236
VpaK11BI GGWCC 2 cut(s) 49, 190
XspI CTAG 1 cut(s) 53
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.