FvH4_1g10640

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000495
Physical Location & Seq
Forward (+)
5814253 .. 5821459
7207 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10640.t1

Sequence Viewer

Length: 684 bp
ATGCTGAAATATCGAAACGATGGGCGCTGCAAGGGCAACGGGTTCTACAAGTATGATGCTTTTGTTTCTGCTGCTCGATCTTTCAATGGGTTTGGCACAACAGGTGATGTTGCTACCCAGAAAAAAGAGCTCGCTGCTTTCTTGGGTCAAACCTCTCACGAAACCACTGGAGGATGGCCAAGTGCACCAGATGGTCCTTATGCTTGGGGATATTGCTTTATCAAGGAACTCAACGAAGCCGTGTACTGCACTCCATCAGCTCAATATCCATGCGCTGCCGGCAAAAAATATTACGGCCGAGGACCAATCCAACTCACTCACAACTACAACTATGGTCCAGCGGGTAAGGCAATCGGAGTGGATCTGATAAACAATCCGGATCTAGTAGCCACAGACCCGGTTATATCATTCAAGACAGCAATATGGTTCTGGATGACTCCTCAGGGAAACAAACCATCAAGCCACGACGTCATTACCGGACGTTGGAATCCATCTGCTGCAGATAGATCGGCGGGTAGGGTACCTGGATATGGAGTGATTACAAACATCATCAATGGACTTGAATGTGGGCGTGGACAAGATAATAGGGTTGCTGATCGGATAGGGTTCTACAAGAGGTACTGTGGCATATTGGCAGTGAGCACTGGGGACAACTTGGACTGTTACAATCAAAGACCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

228

Amino Acids

24.83

Weight (kDa)

8.89

Isoelectric Point (pI)

28.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 1 - 221 6.2e-124 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 471
Acc65I GGTACC 1 cut(s) 520
AccB1I GGYRCC 1 cut(s) 520
AccIII TCCGGA 1 cut(s) 376
AciI CCGC 2 cut(s) 341, 512
AclWI GGATC 2 cut(s) 369, 387
AcoI YGGCCR 2 cut(s) 176, 295
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 3 cut(s) 245, 522, 620
AfiI CCNNNNNNNGG 2 cut(s) 483, 530
AgsI TTSAA 3 cut(s) 85, 412, 563
AjnI CCWGG 1 cut(s) 523
AluBI AGCT 2 cut(s) 130, 260
AluI AGCT 2 cut(s) 130, 260
Alw21I GWGCWC 3 cut(s) 132, 187, 644
Alw44I GTGCAC 1 cut(s) 183
AlwI GGATC 2 cut(s) 369, 387
Aor13HI TCCGGA 1 cut(s) 376
AoxI GGCC 2 cut(s) 176, 295
ApaLI GTGCAC 1 cut(s) 183
ApeKI GCWGC 5 cut(s) 27, 71, 134, 275, 497
Asp718I GGTACC 1 cut(s) 520
AspLEI GCGC 2 cut(s) 27, 275
AspS9I GGNCC 3 cut(s) 194, 302, 335
AsuC2I CCSGG 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 116
AvaII GGWCC 3 cut(s) 194, 302, 335
AxyI CCTNAGG 1 cut(s) 441
BaeGI GKGCMC 1 cut(s) 187
BalI TGGCCA 1 cut(s) 178
BanI GGYRCC 1 cut(s) 520
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 3 cut(s) 132, 187, 644
BbvI GCAGC 5 cut(s) 14, 58, 121, 262, 484
BccI CCATC 6 cut(s) 14, 168, 185, 262, 463, 499
BceAI ACGGC 2 cut(s) 224, 310
BcgI CGANNNNNNTGC 2 cut(s) 489, 523
BciT130I CCWGG 1 cut(s) 525
BcnI CCSGG 1 cut(s) 398
BfaI CTAG 1 cut(s) 383
BfmI CTRYAG 1 cut(s) 498
BfoI RGCGCY 1 cut(s) 28
BisI GCNGC 5 cut(s) 28, 72, 135, 276, 498
BlsI GCNGC 5 cut(s) 29, 73, 136, 277, 499
Bme1390I CCNGG 2 cut(s) 398, 525
Bme18I GGWCC 3 cut(s) 194, 302, 335
BmgT120I GGNCC 3 cut(s) 194, 302, 335
BmiI GGNNCC 1 cut(s) 522
BmrFI CCNGG 2 cut(s) 398, 525
BmrI ACTGGG 1 cut(s) 654
BmsI GCATC 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 654
BpmI CTGGAG 1 cut(s) 189
BpuMI CCSGG 1 cut(s) 398
BsaHI GRCGYC 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 298
BsaWI WCCGGW 2 cut(s) 376, 476
Bsc4I CCNNNNNNNGG 2 cut(s) 483, 530
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 172, 649
Bse21I CCTNAGG 1 cut(s) 441
BseAI TCCGGA 1 cut(s) 376
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 2 cut(s) 179, 438
BseLI CCNNNNNNNGG 2 cut(s) 483, 530
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 2 cut(s) 172, 649
BseRI GAGGAG 1 cut(s) 429
BseSI GKGCMC 1 cut(s) 187
BseX3I CGGCCG 1 cut(s) 295
BseXI GCAGC 5 cut(s) 14, 58, 121, 262, 484
BsgI GTGCAG 1 cut(s) 232
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 2 cut(s) 178, 297
BshNI GGYRCC 1 cut(s) 520
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 3 cut(s) 132, 187, 644
BsiSI CCGG 4 cut(s) 279, 377, 398, 477
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 2 cut(s) 483, 530
BsmFI GGGAC 1 cut(s) 662
BsnI GGCC 2 cut(s) 178, 297
Bsp1286I GDGCHC 3 cut(s) 132, 187, 644
Bsp13I TCCGGA 1 cut(s) 376
Bsp143I GATC 5 cut(s) 77, 361, 379, 506, 595
BspACI CCGC 2 cut(s) 341, 512
BspANI GGCC 2 cut(s) 178, 297
BspCNI CTCAG 1 cut(s) 454
BspEI TCCGGA 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 522
BspMAI CTGCAG 1 cut(s) 502
BspPI GGATC 2 cut(s) 369, 387
BspT107I GGYRCC 1 cut(s) 520
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 2 cut(s) 172, 649
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 5 cut(s) 77, 361, 379, 506, 595
BssNI GRCGYC 1 cut(s) 468
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 2 cut(s) 623, 662
BstACI GRCGYC 1 cut(s) 468
BstC8I GCNNGC 2 cut(s) 132, 280
BstDEI CTNAG 1 cut(s) 441
BstF5I GGATG 2 cut(s) 179, 438
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 2 cut(s) 27, 275
BstKTI GATC 5 cut(s) 80, 364, 382, 509, 598
BstMBI GATC 5 cut(s) 77, 361, 379, 506, 595
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 3 cut(s) 33, 279, 347
BstNI CCWGG 1 cut(s) 525
BstSCI CCNGG 2 cut(s) 396, 523
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 5 cut(s) 14, 58, 121, 262, 484
BstX2I RGATCY 2 cut(s) 361, 379
BstYI RGATCY 2 cut(s) 361, 379
BstZI CGGCCG 1 cut(s) 295
Bsu36I CCTNAGG 1 cut(s) 441
BsuRI GGCC 2 cut(s) 178, 297
BtsCI GGATG 2 cut(s) 179, 438
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 3 cut(s) 165, 642, 642
Cac8I GCNNGC 2 cut(s) 132, 280
CfoI GCGC 2 cut(s) 27, 275
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 3 cut(s) 194, 302, 335
Csp6I GTAC 3 cut(s) 244, 521, 619
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 1 cut(s) 270
CviJI RGCY 7 cut(s) 130, 178, 239, 260, 297, 389, 462
CviKI_1 RGCY 7 cut(s) 130, 178, 239, 260, 297, 389, 462
CviQI GTAC 3 cut(s) 244, 521, 619
DdeI CTNAG 1 cut(s) 441
DpnI GATC 5 cut(s) 79, 363, 381, 508, 597
DpnII GATC 5 cut(s) 77, 361, 379, 506, 595
EaeI YGGCCR 2 cut(s) 176, 295
EagI CGGCCG 1 cut(s) 295
Ecl136II GAGCTC 1 cut(s) 130
EclXI CGGCCG 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 132
Eco47I GGWCC 3 cut(s) 194, 302, 335
Eco52I CGGCCG 1 cut(s) 295
Eco53kI GAGCTC 1 cut(s) 130
Eco81I CCTNAGG 1 cut(s) 441
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 523
EcoT38I GRGCYC 1 cut(s) 132
FaeI CATG 1 cut(s) 273
FaiI YATR 8 cut(s) 54, 201, 271, 333, 404, 424, 531, 629
FaqI GGGAC 1 cut(s) 662
FatI CATG 1 cut(s) 269
FauI CCCGC 2 cut(s) 334, 505
Fnu4HI GCNGC 5 cut(s) 28, 72, 135, 276, 498
FokI GGATG 2 cut(s) 186, 445
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 5 cut(s) 28, 72, 135, 276, 498
FspBI CTAG 1 cut(s) 383
GlaI GCGC 2 cut(s) 26, 274
GluI GCNGC 5 cut(s) 28, 72, 135, 276, 498
GsuI CTGGAG 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 2 cut(s) 178, 297
HapII CCGG 4 cut(s) 279, 377, 398, 477
HhaI GCGC 2 cut(s) 27, 275
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 1 cut(s) 273
Hin6I GCGC 2 cut(s) 25, 273
HinP1I GCGC 2 cut(s) 25, 273
HinfI GANTC 2 cut(s) 436, 487
HpaII CCGG 4 cut(s) 279, 377, 398, 477
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 3 cut(s) 185, 244, 575
Hpy188I TCNGA 3 cut(s) 356, 366, 600
Hpy188III TCNNGA 4 cut(s) 158, 377, 412, 430
Hpy8I GTNNAC 3 cut(s) 185, 244, 575
Hpy99I CGWCG 1 cut(s) 470
HpyCH4III ACNGT 2 cut(s) 623, 662
HpyCH4IV ACGT 2 cut(s) 468, 481
HpyCH4V TGCA 4 cut(s) 30, 185, 249, 500
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 279, 347
HpyF3I CTNAG 1 cut(s) 441
HpySE526I ACGT 2 cut(s) 468, 481
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 1 cut(s) 273
HspAI GCGC 2 cut(s) 25, 273
Kpn2I TCCGGA 1 cut(s) 376
KpnI GGTACC 1 cut(s) 524
KroI GCCGGC 1 cut(s) 278
KroNI GCCGGC 1 cut(s) 280
Kzo9I GATC 5 cut(s) 77, 361, 379, 506, 595
Lsp1109I GCAGC 5 cut(s) 14, 58, 121, 262, 484
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 383
MaeII ACGT 2 cut(s) 468, 481
MaeIII GTNAC 1 cut(s) 662
MalI GATC 5 cut(s) 79, 363, 381, 508, 597
MboI GATC 5 cut(s) 77, 361, 379, 506, 595
MflI RGATCY 2 cut(s) 361, 379
MhlI GDGCHC 3 cut(s) 132, 187, 644
MlsI TGGCCA 1 cut(s) 178
MluNI TGGCCA 1 cut(s) 178
MlyI GAGTC 1 cut(s) 430
MmeI TCCRAC 2 cut(s) 334, 464
MnlI CCTC 5 cut(s) 163, 164, 293, 450, 609
Mox20I TGGCCA 1 cut(s) 178
MroI TCCGGA 1 cut(s) 376
MroNI GCCGGC 1 cut(s) 278
MscI TGGCCA 1 cut(s) 178
Msp20I TGGCCA 1 cut(s) 178
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 4 cut(s) 279, 377, 398, 477
MspR9I CCNGG 2 cut(s) 398, 525
MvaI CCWGG 1 cut(s) 525
MwoI GCNNNNNNNGC 3 cut(s) 33, 279, 347
NaeI GCCGGC 1 cut(s) 280
NciI CCSGG 1 cut(s) 398
NdeII GATC 5 cut(s) 77, 361, 379, 506, 595
NgoMIV GCCGGC 1 cut(s) 278
NlaIII CATG 1 cut(s) 273
NlaIV GGNNCC 1 cut(s) 522
NmeAIII GCCGAG 1 cut(s) 323
PdiI GCCGGC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 487
PkrI GCNGC 5 cut(s) 29, 73, 136, 277, 499
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 523
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 1 cut(s) 522
PspPI GGNCC 3 cut(s) 194, 302, 335
PstI CTGCAG 1 cut(s) 502
PsuI RGATCY 2 cut(s) 361, 379
RsaI GTAC 3 cut(s) 245, 522, 620
RsaNI GTAC 3 cut(s) 244, 521, 619
SacI GAGCTC 1 cut(s) 132
SatI GCNGC 5 cut(s) 28, 72, 135, 276, 498
Sau3AI GATC 5 cut(s) 77, 361, 379, 506, 595
Sau96I GGNCC 3 cut(s) 194, 302, 335
SchI GAGTC 1 cut(s) 430
ScrFI CCNGG 2 cut(s) 398, 525
SduI GDGCHC 3 cut(s) 132, 187, 644
SetI ASST 8 cut(s) 106, 132, 155, 262, 471, 484, 526, 620
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 3 cut(s) 194, 302, 335
SsiI CCGC 2 cut(s) 341, 512
SspI AATATT 1 cut(s) 290
SspMI CTAG 1 cut(s) 383
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 2 cut(s) 396, 523
TaaI ACNGT 2 cut(s) 623, 662
TaiI ACGT 2 cut(s) 471, 484
TaqI TCGA 2 cut(s) 13, 76
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 1 cut(s) 487
TscAI CASTG 3 cut(s) 172, 642, 649
TseI GCWGC 5 cut(s) 27, 71, 134, 275, 497
TspRI CASTG 3 cut(s) 172, 642, 649
VneI GTGCAC 1 cut(s) 183
VpaK11BI GGWCC 3 cut(s) 194, 302, 335
XspI CTAG 1 cut(s) 383
ZraI GACGTC 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.