FvH4_1g10650

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000495
Physical Location & Seq
Forward (+)
5833455 .. 5834561
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10650.t1

Sequence Viewer

Length: 780 bp
ATGAAGACACTCGCCCTTATCATTGTTTCCCTAAGTTTGGTGATAGAGAGCTACGCAGATGTTGCCAGCCTCATTAGCCCCTCTCTTTTCGATCAAATGCTGAAGTATCGAAACGATGGGCGCTGCAAGGGCAACGGGTTCTACAAGTATGATGCTTTTATTTCTGCTGCTCGATCTTTCAATGGGTTTGGCACAACAGGTGATGTTGCTACCCAGAAAAAAGAGCTCGCTGCTTTCTTGGGTCAAACCTCTCACGAAACCACTGGAGGATGGCCAAGTGCACCAGATGGTCCTTATGCTTGGGGATATTGCTTTATCAAGGAACTCAACGAAGCCGTGTACTGCACTCCATCAGCTCAATATCCATGCGCTGCCGGCAAAAAATATTACGGCCGAGGACCAATCCAACTCAGTCACAACTACAACTATGGTCCAGCGGGTAAGGCAATCGGAGTGGATCTGATAAACAATCCGGATCTAGTAGCCACAGACCCGGTTATATCATTCAAGACAGCAATATGGTTCTGGATGACTCCTCAGGGAAACAAACCATCAAGCCACGACGTCATTACCGGACGTTGGAATCCATCTGCTGCAGATAGATCGGCGGGTAGGGTACCTGGATATGGAGTGATTACAAACATCATCAATGGACTTGAATGTGGGCGTGGACAAGATAATAGGGTTGCTGATCGGATAGGGTTCTACAAGAGGTACTGTGGCATATTGGCAGTGAGCACTGGGGACAACTTGGACTGTTACAATCAAAGACCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

260

Amino Acids

28.25

Weight (kDa)

8.59

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 24 - 253 1.3e-128 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 567
Acc65I GGTACC 1 cut(s) 616
AccB1I GGYRCC 1 cut(s) 616
AccIII TCCGGA 1 cut(s) 472
AciI CCGC 2 cut(s) 437, 608
AclWI GGATC 2 cut(s) 465, 483
AcoI YGGCCR 2 cut(s) 272, 391
AcuI CTGAAG 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 564
AfaI GTAC 3 cut(s) 341, 618, 716
AfiI CCNNNNNNNGG 3 cut(s) 37, 579, 626
AgsI TTSAA 3 cut(s) 181, 508, 659
AjnI CCWGG 1 cut(s) 619
AluBI AGCT 3 cut(s) 51, 226, 356
AluI AGCT 3 cut(s) 51, 226, 356
Alw21I GWGCWC 3 cut(s) 228, 283, 740
Alw44I GTGCAC 1 cut(s) 279
AlwI GGATC 2 cut(s) 465, 483
Aor13HI TCCGGA 1 cut(s) 472
AoxI GGCC 2 cut(s) 272, 391
ApaLI GTGCAC 1 cut(s) 279
ApeKI GCWGC 5 cut(s) 123, 167, 230, 371, 593
Asp718I GGTACC 1 cut(s) 616
AspLEI GCGC 2 cut(s) 123, 371
AspS9I GGNCC 3 cut(s) 290, 398, 431
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 2 cut(s) 52, 212
AvaII GGWCC 3 cut(s) 290, 398, 431
AxyI CCTNAGG 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 283
BalI TGGCCA 1 cut(s) 274
BanI GGYRCC 1 cut(s) 616
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 3 cut(s) 228, 283, 740
BbvI GCAGC 5 cut(s) 110, 154, 217, 358, 580
BccI CCATC 6 cut(s) 110, 264, 281, 358, 559, 595
BceAI ACGGC 2 cut(s) 320, 406
BcgI CGANNNNNNTGC 2 cut(s) 585, 619
BciT130I CCWGG 1 cut(s) 621
BcnI CCSGG 1 cut(s) 494
BfaI CTAG 1 cut(s) 479
BfmI CTRYAG 1 cut(s) 594
BfoI RGCGCY 1 cut(s) 124
BisI GCNGC 5 cut(s) 124, 168, 231, 372, 594
BlsI GCNGC 5 cut(s) 125, 169, 232, 373, 595
Bme1390I CCNGG 2 cut(s) 494, 621
Bme18I GGWCC 3 cut(s) 290, 398, 431
BmgT120I GGNCC 3 cut(s) 290, 398, 431
BmiI GGNNCC 1 cut(s) 618
BmrFI CCNGG 2 cut(s) 494, 621
BmrI ACTGGG 1 cut(s) 750
BmsI GCATC 1 cut(s) 142
BmuI ACTGGG 1 cut(s) 750
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 494
BsaHI GRCGYC 1 cut(s) 564
BsaJI CCNNGG 1 cut(s) 394
BsaWI WCCGGW 2 cut(s) 472, 572
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 579, 626
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 2 cut(s) 268, 745
Bse21I CCTNAGG 1 cut(s) 537
BseAI TCCGGA 1 cut(s) 472
BseBI CCWGG 1 cut(s) 621
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 2 cut(s) 275, 534
BseLI CCNNNNNNNGG 3 cut(s) 37, 579, 626
BseMII CTCAG 2 cut(s) 424, 551
BseNI ACTGG 2 cut(s) 268, 745
BseRI GAGGAG 1 cut(s) 525
BseSI GKGCMC 1 cut(s) 283
BseX3I CGGCCG 1 cut(s) 391
BseXI GCAGC 5 cut(s) 110, 154, 217, 358, 580
BsgI GTGCAG 1 cut(s) 328
Bsh1285I CGRYCG 1 cut(s) 394
BshFI GGCC 2 cut(s) 274, 393
BshNI GGYRCC 1 cut(s) 616
BsiEI CGRYCG 1 cut(s) 394
BsiHKAI GWGCWC 3 cut(s) 228, 283, 740
BsiSI CCGG 4 cut(s) 375, 473, 494, 573
BslFI GGGAC 1 cut(s) 758
BslI CCNNNNNNNGG 3 cut(s) 37, 579, 626
BsmFI GGGAC 1 cut(s) 758
BsnI GGCC 2 cut(s) 274, 393
Bsp1286I GDGCHC 3 cut(s) 228, 283, 740
Bsp13I TCCGGA 1 cut(s) 472
Bsp143I GATC 6 cut(s) 91, 173, 457, 475, 602, 691
BspACI CCGC 2 cut(s) 437, 608
BspANI GGCC 2 cut(s) 274, 393
BspCNI CTCAG 2 cut(s) 423, 550
BspEI TCCGGA 1 cut(s) 472
BspLI GGNNCC 1 cut(s) 618
BspMAI CTGCAG 1 cut(s) 598
BspPI GGATC 2 cut(s) 465, 483
BspT107I GGYRCC 1 cut(s) 616
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 2 cut(s) 268, 745
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 6 cut(s) 91, 173, 457, 475, 602, 691
BssNI GRCGYC 1 cut(s) 564
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 2 cut(s) 719, 758
BstACI GRCGYC 1 cut(s) 564
BstAPI GCANNNNNTGC 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 67, 228, 376
BstDEI CTNAG 3 cut(s) 32, 410, 537
BstF5I GGATG 2 cut(s) 275, 534
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 2 cut(s) 123, 371
BstKTI GATC 6 cut(s) 94, 176, 460, 478, 605, 694
BstMBI GATC 6 cut(s) 91, 173, 457, 475, 602, 691
BstMCI CGRYCG 1 cut(s) 394
BstMWI GCNNNNNNNGC 5 cut(s) 62, 75, 129, 375, 443
BstNI CCWGG 1 cut(s) 621
BstSCI CCNGG 2 cut(s) 492, 619
BstSFI CTRYAG 1 cut(s) 594
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 5 cut(s) 110, 154, 217, 358, 580
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 2 cut(s) 457, 475
BstYI RGATCY 2 cut(s) 457, 475
BstZI CGGCCG 1 cut(s) 391
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 2 cut(s) 274, 393
BtsCI GGATG 2 cut(s) 275, 534
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 3 cut(s) 261, 738, 738
Cac8I GCNNGC 3 cut(s) 67, 228, 376
CfoI GCGC 2 cut(s) 123, 371
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 3 cut(s) 290, 398, 431
Csp6I GTAC 3 cut(s) 340, 617, 715
CspCI CAANNNNNGTGG 2 cut(s) 435, 470
CviAII CATG 1 cut(s) 366
CviQI GTAC 3 cut(s) 340, 617, 715
DdeI CTNAG 3 cut(s) 32, 410, 537
DpnI GATC 6 cut(s) 93, 175, 459, 477, 604, 693
DpnII GATC 6 cut(s) 91, 173, 457, 475, 602, 691
EaeI YGGCCR 2 cut(s) 272, 391
EagI CGGCCG 1 cut(s) 391
Ecl136II GAGCTC 1 cut(s) 226
EclXI CGGCCG 1 cut(s) 391
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 3 cut(s) 290, 398, 431
Eco52I CGGCCG 1 cut(s) 391
Eco53kI GAGCTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 122
Eco81I CCTNAGG 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 619
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 1 cut(s) 369
FaiI YATR 8 cut(s) 150, 297, 367, 429, 500, 520, 627, 725
FaqI GGGAC 1 cut(s) 758
FatI CATG 1 cut(s) 365
FauI CCCGC 2 cut(s) 430, 601
Fnu4HI GCNGC 5 cut(s) 124, 168, 231, 372, 594
FokI GGATG 2 cut(s) 282, 541
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 5 cut(s) 124, 168, 231, 372, 594
FspBI CTAG 1 cut(s) 479
GlaI GCGC 2 cut(s) 122, 370
GluI GCNGC 5 cut(s) 124, 168, 231, 372, 594
GsuI CTGGAG 1 cut(s) 285
HaeII RGCGCY 1 cut(s) 124
HaeIII GGCC 2 cut(s) 274, 393
HapII CCGG 4 cut(s) 375, 473, 494, 573
HhaI GCGC 2 cut(s) 123, 371
Hin1I GRCGYC 1 cut(s) 564
Hin1II CATG 1 cut(s) 369
Hin6I GCGC 2 cut(s) 121, 369
HinP1I GCGC 2 cut(s) 121, 369
HinfI GANTC 2 cut(s) 532, 583
HpaII CCGG 4 cut(s) 375, 473, 494, 573
HphI GGTGA 2 cut(s) 52, 212
Hpy166II GTNNAC 3 cut(s) 281, 340, 671
Hpy188I TCNGA 3 cut(s) 452, 462, 696
Hpy188III TCNNGA 4 cut(s) 254, 473, 508, 526
Hpy8I GTNNAC 3 cut(s) 281, 340, 671
Hpy99I CGWCG 1 cut(s) 566
HpyCH4III ACNGT 2 cut(s) 719, 758
HpyCH4IV ACGT 2 cut(s) 564, 577
HpyCH4V TGCA 4 cut(s) 126, 281, 345, 596
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 75, 129, 375, 443
HpyF3I CTNAG 3 cut(s) 32, 410, 537
HpySE526I ACGT 2 cut(s) 564, 577
Hsp92I GRCGYC 1 cut(s) 564
Hsp92II CATG 1 cut(s) 369
HspAI GCGC 2 cut(s) 121, 369
Kpn2I TCCGGA 1 cut(s) 472
KpnI GGTACC 1 cut(s) 620
KroI GCCGGC 1 cut(s) 374
KroNI GCCGGC 1 cut(s) 376
Kzo9I GATC 6 cut(s) 91, 173, 457, 475, 602, 691
Lsp1109I GCAGC 5 cut(s) 110, 154, 217, 358, 580
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 479
MaeII ACGT 2 cut(s) 564, 577
MaeIII GTNAC 2 cut(s) 413, 758
MalI GATC 6 cut(s) 93, 175, 459, 477, 604, 693
MboI GATC 6 cut(s) 91, 173, 457, 475, 602, 691
MboII GAAGA 1 cut(s) 16
MflI RGATCY 2 cut(s) 457, 475
MhlI GDGCHC 3 cut(s) 228, 283, 740
MlsI TGGCCA 1 cut(s) 274
MluNI TGGCCA 1 cut(s) 274
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 2 cut(s) 430, 560
MnlI CCTC 7 cut(s) 80, 91, 259, 260, 389, 546, 705
Mox20I TGGCCA 1 cut(s) 274
MroI TCCGGA 1 cut(s) 472
MroNI GCCGGC 1 cut(s) 374
MscI TGGCCA 1 cut(s) 274
Msp20I TGGCCA 1 cut(s) 274
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 4 cut(s) 375, 473, 494, 573
MspR9I CCNGG 2 cut(s) 494, 621
MvaI CCWGG 1 cut(s) 621
MwoI GCNNNNNNNGC 5 cut(s) 62, 75, 129, 375, 443
NaeI GCCGGC 1 cut(s) 376
NciI CCSGG 1 cut(s) 494
NdeII GATC 6 cut(s) 91, 173, 457, 475, 602, 691
NgoMIV GCCGGC 1 cut(s) 374
NlaIII CATG 1 cut(s) 369
NlaIV GGNNCC 1 cut(s) 618
NmeAIII GCCGAG 1 cut(s) 419
NmuCI GTSAC 1 cut(s) 413
PdiI GCCGGC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 583
PkrI GCNGC 5 cut(s) 125, 169, 232, 373, 595
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
Psp124BI GAGCTC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 619
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 1 cut(s) 618
PspPI GGNCC 3 cut(s) 290, 398, 431
PstI CTGCAG 1 cut(s) 598
PsuI RGATCY 2 cut(s) 457, 475
RsaI GTAC 3 cut(s) 341, 618, 716
RsaNI GTAC 3 cut(s) 340, 617, 715
SacI GAGCTC 1 cut(s) 228
SatI GCNGC 5 cut(s) 124, 168, 231, 372, 594
Sau3AI GATC 6 cut(s) 91, 173, 457, 475, 602, 691
Sau96I GGNCC 3 cut(s) 290, 398, 431
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 2 cut(s) 494, 621
SduI GDGCHC 3 cut(s) 228, 283, 740
SetI ASST 9 cut(s) 53, 202, 228, 251, 358, 567, 580, 622, 716
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 594
SinI GGWCC 3 cut(s) 290, 398, 431
SsiI CCGC 2 cut(s) 437, 608
SspI AATATT 1 cut(s) 386
SspMI CTAG 1 cut(s) 479
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 2 cut(s) 492, 619
TaaI ACNGT 2 cut(s) 719, 758
TaiI ACGT 2 cut(s) 567, 580
TaqI TCGA 3 cut(s) 90, 109, 172
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 1 cut(s) 583
TscAI CASTG 3 cut(s) 268, 738, 745
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 5 cut(s) 123, 167, 230, 371, 593
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 268, 738, 745
VneI GTGCAC 1 cut(s) 279
VpaK11BI GGWCC 3 cut(s) 290, 398, 431
XspI CTAG 1 cut(s) 479
ZraI GACGTC 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.