Rh2AG114900

Endochitinase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
10269828 .. 10270427
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG114900.1

Sequence Viewer

Length: 591 bp
ATGGTATTGAAACTTACCCAACAACCCATTTTTTTTCAAATGGATGACCAAGATCATTTCCCCATAACACACAGGCCACTATATATACCACCCCTACAACCCTACCCACAGACATATCATCAATCCAACACATTCAAAACAATGAAGTTCCACACTCTTATCATCCTCTCCCTAACTTTGGTGATAGAGGCCTTGGCAGAGCAGTGTGGGAGACAATCTGGAAGTGCAACGTGTCCAAATGGGCTGTGTAGTAGCCAATATGGGTGGTGTGGCACAACAGCCGATTACTGTGGAACTGGTTGCCAAAGCCAATGTAGTTCTGGAGGTGGTGGGGGTGGCTCAACGGGGTCGGGGACCCCAAGTGGTGGCGGTGATGTTAGCAGTATAATTAGCGCATCTCTTTTTAATCAAATGCTCAAGTACCGAAATGATGGTCGGTGCCCAAGTAATGGGTTTTATAAGTATGATGCTTTCATTGCTGCTGCCCGAACCTTTAATGGGTTTGGCACAACTGGAGATGTTGCTACAGGCAAGAAGGAACTTGCTGCTTTCTTGGGTCAAACGTCACATGAGACAACCGGTCAGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

196

Amino Acids

20.92

Weight (kDa)

6.97

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chitin_bind_1 PF00187 68 - 105 3.6e-14 Chitin recognition protein
Glyco_hydro_19 PF00182 129 - 195 4.2e-28 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 459
AccB1I GGYRCC 1 cut(s) 438
AccB7I CCANNNNNTGG 2 cut(s) 365, 449
AciI CCGC 1 cut(s) 369
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 4 cut(s) 178, 365, 449, 498
AflIII ACRYGT 1 cut(s) 230
AgeI ACCGGT 1 cut(s) 578
AgsI TTSAA 3 cut(s) 10, 38, 136
AhdI GACNNNNNGTC 1 cut(s) 579
Alw26I GTCTC 2 cut(s) 205, 566
AoxI GGCC 2 cut(s) 74, 189
ApeKI GCWGC 3 cut(s) 479, 482, 545
ArsI GACNNNNNNTTYG 2 cut(s) 418, 450
AsiGI ACCGGT 1 cut(s) 578
AspLEI GCGC 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 354
AsuHPI GGTGA 2 cut(s) 193, 383
AvaII GGWCC 1 cut(s) 354
BaeGI GKGCMC 1 cut(s) 443
BanI GGYRCC 1 cut(s) 438
BbvI GCAGC 3 cut(s) 466, 469, 532
BccI CCATC 1 cut(s) 425
BcoDI GTCTC 2 cut(s) 205, 566
BfmI CTRYAG 1 cut(s) 525
BisI GCNGC 3 cut(s) 480, 483, 546
BlsI GCNGC 3 cut(s) 481, 484, 547
Bme18I GGWCC 1 cut(s) 354
BmeRI GACNNNNNGTC 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 3 cut(s) 355, 356, 440
BmsI GCATC 2 cut(s) 404, 457
BpmI CTGGAG 2 cut(s) 342, 534
BpuEI CTTGAG 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 578
Bsc4I CCNNNNNNNGG 4 cut(s) 178, 365, 449, 498
Bse118I RCCGGY 1 cut(s) 578
Bse1I ACTGG 2 cut(s) 301, 517
Bse3DI GCAATG 1 cut(s) 474
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 2 cut(s) 49, 162
BseLI CCNNNNNNNGG 4 cut(s) 178, 365, 449, 498
BseMI GCAATG 1 cut(s) 474
BseNI ACTGG 2 cut(s) 301, 517
BseSI GKGCMC 1 cut(s) 443
BseXI GCAGC 3 cut(s) 466, 469, 532
BshFI GGCC 2 cut(s) 76, 191
BshNI GGYRCC 1 cut(s) 438
BshTI ACCGGT 1 cut(s) 578
BsiSI CCGG 1 cut(s) 579
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 4 cut(s) 178, 365, 449, 498
BsmAI GTCTC 2 cut(s) 205, 566
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 2 cut(s) 76, 191
Bsp1286I GDGCHC 1 cut(s) 443
Bsp143I GATC 1 cut(s) 52
BspACI CCGC 1 cut(s) 369
BspANI GGCC 2 cut(s) 76, 191
BspLI GGNNCC 3 cut(s) 355, 356, 440
BspT107I GGYRCC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 474
BsrFI RCCGGY 1 cut(s) 578
BsrI ACTGG 2 cut(s) 301, 517
BssAI RCCGGY 1 cut(s) 578
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 290
BstF5I GGATG 2 cut(s) 49, 162
BstHHI GCGC 1 cut(s) 395
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 2 cut(s) 205, 566
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstSFI CTRYAG 1 cut(s) 525
BstSLI GKGCMC 1 cut(s) 443
BstV1I GCAGC 3 cut(s) 466, 469, 532
BsuRI GGCC 2 cut(s) 76, 191
BtsCI GGATG 2 cut(s) 49, 162
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 209
CfoI GCGC 1 cut(s) 395
Cfr10I RCCGGY 1 cut(s) 578
Cfr13I GGNCC 1 cut(s) 354
Csp6I GTAC 1 cut(s) 421
CspAI ACCGGT 1 cut(s) 578
CspCI CAANNNNNGTGG 2 cut(s) 245, 280
CviAII CATG 1 cut(s) 569
CviJI RGCY 7 cut(s) 76, 191, 244, 255, 281, 309, 339
CviKI_1 RGCY 7 cut(s) 76, 191, 244, 255, 281, 309, 339
CviQI GTAC 1 cut(s) 421
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
DriI GACNNNNNGTC 1 cut(s) 579
Eam1105I GACNNNNNGTC 1 cut(s) 579
Eco130I CCWWGG 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 1 cut(s) 572
FaqI GGGAC 1 cut(s) 367
FatI CATG 1 cut(s) 568
Fnu4HI GCNGC 3 cut(s) 480, 483, 546
FokI GGATG 2 cut(s) 56, 149
Fsp4HI GCNGC 3 cut(s) 480, 483, 546
GlaI GCGC 1 cut(s) 394
GluI GCNGC 3 cut(s) 480, 483, 546
GsuI CTGGAG 2 cut(s) 342, 534
HaeIII GGCC 2 cut(s) 76, 191
HapII CCGG 1 cut(s) 579
HhaI GCGC 1 cut(s) 395
Hin1II CATG 1 cut(s) 572
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HpaII CCGG 1 cut(s) 579
HphI GGTGA 2 cut(s) 193, 383
Hpy188III TCNNGA 2 cut(s) 219, 321
HpyAV CCTTC 1 cut(s) 529
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 2 cut(s) 230, 563
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpySE526I ACGT 2 cut(s) 230, 563
Hsp92II CATG 1 cut(s) 572
HspAI GCGC 1 cut(s) 393
KflI GGGWCCC 1 cut(s) 354
Kzo9I GATC 1 cut(s) 52
LpnPI CCDG 6 cut(s) 58, 204, 282, 306, 498, 513
Lsp1109I GCAGC 3 cut(s) 466, 469, 532
LweI GCATC 2 cut(s) 404, 457
MaeII ACGT 2 cut(s) 230, 563
MaeIII GTNAC 1 cut(s) 564
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 443
MluCI AATT 1 cut(s) 387
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 3 cut(s) 176, 181, 317
MseI TTAA 2 cut(s) 405, 495
MspI CCGG 1 cut(s) 579
MwoI GCNNNNNNNGC 1 cut(s) 476
NdeII GATC 1 cut(s) 52
NlaIII CATG 1 cut(s) 572
NlaIV GGNNCC 3 cut(s) 355, 356, 440
NmuCI GTSAC 1 cut(s) 564
PceI AGGCCT 1 cut(s) 191
PflMI CCANNNNNTGG 2 cut(s) 365, 449
PinAI ACCGGT 1 cut(s) 578
PkrI GCNGC 3 cut(s) 481, 484, 547
PpuMI RGGWCCY 1 cut(s) 354
PsiI TTATAA 1 cut(s) 459
Psp5II RGGWCCY 1 cut(s) 354
PspN4I GGNNCC 3 cut(s) 355, 356, 440
PspPI GGNCC 1 cut(s) 354
PspPPI RGGWCCY 1 cut(s) 354
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SaqAI TTAA 2 cut(s) 405, 495
SatI GCNGC 3 cut(s) 480, 483, 546
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 1 cut(s) 354
SduI GDGCHC 1 cut(s) 443
SetI ASST 4 cut(s) 233, 328, 494, 566
SfaNI GCATC 2 cut(s) 404, 457
SfcI CTRYAG 1 cut(s) 525
SinI GGWCC 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 1 cut(s) 387
SseBI AGGCCT 1 cut(s) 191
SsiI CCGC 1 cut(s) 369
StuI AGGCCT 1 cut(s) 191
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 2 cut(s) 233, 566
TasI AATT 1 cut(s) 387
Tru1I TTAA 2 cut(s) 405, 495
Tru9I TTAA 2 cut(s) 405, 495
TscAI CASTG 1 cut(s) 209
TseFI GTSAC 1 cut(s) 564
TseI GCWGC 3 cut(s) 479, 482, 545
Tsp45I GTSAC 1 cut(s) 564
TspDTI ATGAA 2 cut(s) 158, 463
TspRI CASTG 1 cut(s) 209
Van91I CCANNNNNTGG 2 cut(s) 365, 449
VpaK11BI GGWCC 1 cut(s) 354
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.