Rh6AG236700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000495
Physical Location & Seq
Reverse (-)
42199406 .. 42212636
13231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG236700.1

Sequence Viewer

Length: 186 bp
ATGATGTCATCACCTGGAGATGGAACCCTTCCGGAGCTGATCAGTCAGCGGGTAGGTATTCCGGGTATGGTACGATCAGAAATATCATCAACGGTGGACTCGAATGTGGTAAAGGATGGGATGGACTCAAACTTGATTGTTATAATCAGAAGCCTTTTGGGTCTGGATATATGGGATCGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.54

Weight (kDa)

4.41

Isoelectric Point (pI)

56.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 143
AccIII TCCGGA 1 cut(s) 31
AciI CCGC 1 cut(s) 49
AclWI GGATC 1 cut(s) 183
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 20
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
AlwI GGATC 1 cut(s) 183
Aor13HI TCCGGA 1 cut(s) 31
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 3
BccI CCATC 3 cut(s) 14, 110, 115
BciT130I CCWGG 1 cut(s) 15
BclI TGATCA 1 cut(s) 39
BcnI CCSGG 1 cut(s) 63
Bme1390I CCNGG 2 cut(s) 15, 63
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 2 cut(s) 15, 63
BpmI CTGGAG 1 cut(s) 36
BpuMI CCSGG 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 20
BseAI TCCGGA 1 cut(s) 31
BseBI CCWGG 1 cut(s) 15
BseGI GGATG 2 cut(s) 121, 126
BseLI CCNNNNNNNGG 1 cut(s) 20
BsiSI CCGG 2 cut(s) 32, 62
BslI CCNNNNNNNGG 1 cut(s) 20
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 3 cut(s) 39, 74, 175
BspACI CCGC 1 cut(s) 49
BspEI TCCGGA 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 25
BspPI GGATC 1 cut(s) 183
BssMI GATC 3 cut(s) 39, 74, 175
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 94
BstF5I GGATG 2 cut(s) 121, 126
BstKTI GATC 3 cut(s) 42, 77, 178
BstMBI GATC 3 cut(s) 39, 74, 175
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 2 cut(s) 13, 61
BtsCI GGATG 2 cut(s) 121, 126
Csp6I GTAC 1 cut(s) 71
CviJI RGCY 2 cut(s) 37, 153
CviKI_1 RGCY 2 cut(s) 37, 153
CviQI GTAC 1 cut(s) 71
DpnI GATC 3 cut(s) 41, 76, 177
DpnII GATC 3 cut(s) 39, 74, 175
EcoRII CCWGG 1 cut(s) 13
FaiI YATR 4 cut(s) 68, 143, 170, 172
FauI CCCGC 1 cut(s) 42
FbaI TGATCA 1 cut(s) 39
FokI GGATG 2 cut(s) 128, 133
GsuI CTGGAG 1 cut(s) 36
HapII CCGG 2 cut(s) 32, 62
HinfI GANTC 2 cut(s) 98, 125
HpaII CCGG 2 cut(s) 32, 62
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 79, 149
Hpy188III TCNNGA 2 cut(s) 32, 164
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 94
Kpn2I TCCGGA 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 3 cut(s) 39, 74, 175
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 4 cut(s) 27, 45, 75, 149
MalI GATC 3 cut(s) 41, 76, 177
MboI GATC 3 cut(s) 39, 74, 175
MlyI GAGTC 2 cut(s) 92, 119
MroI TCCGGA 1 cut(s) 31
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 2 cut(s) 32, 62
MspR9I CCNGG 2 cut(s) 15, 63
MvaI CCWGG 1 cut(s) 15
NciI CCSGG 1 cut(s) 63
NdeII GATC 3 cut(s) 39, 74, 175
NlaIV GGNNCC 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PleI GAGTC 2 cut(s) 92, 119
PpsI GAGTC 2 cut(s) 92, 119
PsiI TTATAA 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 13
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 25
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
Sau3AI GATC 3 cut(s) 39, 74, 175
SchI GAGTC 2 cut(s) 92, 119
ScrFI CCNGG 2 cut(s) 15, 63
SetI ASST 3 cut(s) 16, 39, 58
SgeI CNNG 9 cut(s) 26, 27, 44, 62, 74, 75, 112, 145, 176
SsiI CCGC 1 cut(s) 49
StyD4I CCNGG 2 cut(s) 13, 61
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.