Rroxscaffold_7G00188610

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000495
Physical Location & Seq
Forward (+)
28194235 .. 28205022
10788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188610.1

Sequence Viewer

Length: 723 bp
ATGCAAAGTTCTTTCTTAATTTTAATTGGGTTGCCCTATCGCCACGTGGTAGGGCAGTCCCTACCTAAGAATTTCTCTCCAAATCAATGTGGTGGCGGCGGTAGCAGTGATATTGGCGGTCTCATATCATGGGCAACTTTCGATCAGATGCTTAAGCATAGAAATGATGGTGGTTGCCCTACCAAAGGGTTTTATACTTATGATGCCTTCATTGCAACTGCCAAGTCCTTCCCCAGCTTTGTACAGACTCCTCCATCGTCTACTGTGATCCCAAATTTTCCCAACTACCCCTGTGCTGCCAATAAGCAGTATTATGGCTGTGGTCTATGCAACTTTCTTGCCCGTCATCCACCCGAATTATGGCGTCCGATTCACATCTCAATCGTAGCCCGTCATCCACTCGGGATTATGGCGTCCGATTCACAACTCAATCGTAGCCCGTCGTCCACTCAAGATTATGGCGTCCGATTCACAACCCAATCGCAGCCCGTCATCCACTCGGATTATGGCGTCCGATTCACATCTCAATCGCAGCCCGTCATCCACTCGGGATTATGGCGTCCGATTCACATCTCACATATCACCACACGACCTAAGCTCAAAGGGTCAAGCCCTCCCCCATCCTTCTTGCGACATCTTGCAAAGCTAGCCTTTGCCCCGCATCGATTCAACTCTACACAAACCATCATTCTCATTGTAAAGACCAAGTGTAGACTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

240

Amino Acids

26.56

Weight (kDa)

9.87

Isoelectric Point (pI)

64.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 42 - 83 1.6e-13 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 260, 712
AciI CCGC 4 cut(s) 96, 99, 117, 659
AclWI GGATC 1 cut(s) 262
AcsI RAATTY 2 cut(s) 70, 274
AcvI CACGTG 1 cut(s) 46
AcyI GRCGYC 5 cut(s) 364, 413, 462, 510, 559
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 2 cut(s) 185, 360
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 670
AluBI AGCT 3 cut(s) 237, 598, 646
AluI AGCT 3 cut(s) 237, 598, 646
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 1 cut(s) 262
Ama87I CYCGRG 2 cut(s) 401, 547
ApeKI GCWGC 3 cut(s) 296, 484, 532
ApoI RAATTY 2 cut(s) 70, 274
AsuHPI GGTGA 1 cut(s) 574
AsuNHI GCTAGC 1 cut(s) 646
AvaI CYCGRG 2 cut(s) 401, 547
BbrPI CACGTG 1 cut(s) 46
BbvI GCAGC 3 cut(s) 283, 496, 544
BccI CCATC 4 cut(s) 161, 262, 628, 692
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 647
BfrI CTTAAG 1 cut(s) 152
BisI GCNGC 4 cut(s) 97, 297, 485, 533
BlsI GCNGC 4 cut(s) 98, 298, 486, 534
BmeT110I CYCGRG 2 cut(s) 401, 547
BmsI GCATC 3 cut(s) 138, 193, 670
BmtI GCTAGC 1 cut(s) 650
Bpu10I CCTNAGC 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 435
Bsa29I ATCGAT 1 cut(s) 664
BsaAI YACGTR 1 cut(s) 46
BsaBI GATNNNNATC 3 cut(s) 374, 520, 569
BsaHI GRCGYC 5 cut(s) 364, 413, 462, 510, 559
BsaI GGTCTC 1 cut(s) 125
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 360
Bse3DI GCAATG 1 cut(s) 210
Bse8I GATNNNNATC 3 cut(s) 374, 520, 569
BseCI ATCGAT 1 cut(s) 664
BseGI GGATG 5 cut(s) 346, 394, 492, 540, 620
BseJI GATNNNNATC 3 cut(s) 374, 520, 569
BseLI CCNNNNNNNGG 2 cut(s) 185, 360
BseMI GCAATG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 3 cut(s) 283, 496, 544
BseYI CCCAGC 1 cut(s) 233
BshVI ATCGAT 1 cut(s) 664
BsiHKCI CYCGRG 2 cut(s) 401, 547
BslFI GGGAC 1 cut(s) 43
BslI CCNNNNNNNGG 2 cut(s) 185, 360
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 43
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 2 cut(s) 401, 547
Bsp1407I TGTACA 1 cut(s) 241
Bsp143I GATC 2 cut(s) 142, 267
BspACI CCGC 4 cut(s) 96, 99, 117, 659
BspDI ATCGAT 1 cut(s) 664
BspOI GCTAGC 1 cut(s) 650
BspPI GGATC 1 cut(s) 262
BspTI CTTAAG 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 210
BsrGI TGTACA 1 cut(s) 241
BssMI GATC 2 cut(s) 142, 267
BssNI GRCGYC 5 cut(s) 364, 413, 462, 510, 559
Bst4CI ACNGT 1 cut(s) 265
BstACI GRCGYC 5 cut(s) 364, 413, 462, 510, 559
BstAFI CTTAAG 1 cut(s) 152
BstAUI TGTACA 1 cut(s) 241
BstBAI YACGTR 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 648
BstDEI CTNAG 2 cut(s) 66, 594
BstENI CCTNNNNNAGG 1 cut(s) 183
BstF5I GGATG 5 cut(s) 346, 394, 492, 540, 620
BstKTI GATC 2 cut(s) 145, 270
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 2 cut(s) 142, 267
BstMWI GCNNNNNNNGC 3 cut(s) 102, 212, 647
BstV1I GCAGC 3 cut(s) 283, 496, 544
Bsu15I ATCGAT 1 cut(s) 664
BsuTUI ATCGAT 1 cut(s) 664
BtsCI GGATG 5 cut(s) 346, 394, 492, 540, 620
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 648
ClaI ATCGAT 1 cut(s) 664
CseI GACGC 5 cut(s) 353, 402, 451, 499, 548
Csp6I GTAC 1 cut(s) 242
CviAII CATG 1 cut(s) 129
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 2 cut(s) 66, 594
DpnI GATC 2 cut(s) 144, 269
DpnII GATC 2 cut(s) 142, 267
Eco31I GGTCTC 1 cut(s) 125
Eco72I CACGTG 1 cut(s) 46
Eco88I CYCGRG 2 cut(s) 401, 547
EcoNI CCTNNNNNAGG 1 cut(s) 183
FaeI CATG 1 cut(s) 132
FalI AAGNNNNNCTT 2 cut(s) 635, 667
FaqI GGGAC 1 cut(s) 43
FatI CATG 1 cut(s) 128
FauI CCCGC 1 cut(s) 666
FblI GTMKAC 2 cut(s) 260, 712
Fnu4HI GCNGC 4 cut(s) 97, 297, 485, 533
FokI GGATG 5 cut(s) 333, 381, 479, 527, 607
Fsp4HI GCNGC 4 cut(s) 97, 297, 485, 533
FspBI CTAG 1 cut(s) 647
GluI GCNGC 4 cut(s) 97, 297, 485, 533
GsaI CCCAGC 1 cut(s) 237
HgaI GACGC 5 cut(s) 353, 402, 451, 499, 548
Hin1I GRCGYC 5 cut(s) 364, 413, 462, 510, 559
Hin1II CATG 1 cut(s) 132
HinfI GANTC 7 cut(s) 247, 370, 419, 468, 516, 565, 666
HphI GGTGA 1 cut(s) 574
Hpy166II GTNNAC 3 cut(s) 261, 447, 713
Hpy188I TCNGA 7 cut(s) 147, 369, 418, 467, 502, 515, 564
Hpy188III TCNNGA 3 cut(s) 403, 452, 549
Hpy8I GTNNAC 3 cut(s) 261, 447, 713
Hpy99I CGWCG 1 cut(s) 445
HpyAV CCTTC 3 cut(s) 217, 238, 634
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 4 cut(s) 4, 215, 330, 641
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 212, 647
HpyF3I CTNAG 2 cut(s) 66, 594
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 5 cut(s) 364, 413, 462, 510, 559
Hsp92II CATG 1 cut(s) 132
Kzo9I GATC 2 cut(s) 142, 267
LpnPI CCDG 2 cut(s) 247, 304
Lsp1109I GCAGC 3 cut(s) 283, 496, 544
LweI GCATC 3 cut(s) 138, 193, 670
MaeI CTAG 1 cut(s) 647
MaeII ACGT 1 cut(s) 45
MalI GATC 2 cut(s) 144, 269
MboI GATC 2 cut(s) 142, 267
MluCI AATT 5 cut(s) 18, 24, 70, 274, 356
MlyI GAGTC 1 cut(s) 241
MnlI CCTC 2 cut(s) 261, 624
MseI TTAA 3 cut(s) 17, 23, 153
MslI CAYNNNNRTG 1 cut(s) 162
MspCI CTTAAG 1 cut(s) 152
MwoI GCNNNNNNNGC 3 cut(s) 102, 212, 647
NdeII GATC 2 cut(s) 142, 267
NheI GCTAGC 1 cut(s) 646
NlaIII CATG 1 cut(s) 132
PfeI GAWTC 6 cut(s) 370, 419, 468, 516, 565, 666
PkrI GCNGC 4 cut(s) 98, 298, 486, 534
PleI GAGTC 1 cut(s) 241
PmaCI CACGTG 1 cut(s) 46
PmlI CACGTG 1 cut(s) 46
PpsI GAGTC 1 cut(s) 241
Ppu21I YACGTR 1 cut(s) 46
PspCI CACGTG 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 233
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 3 cut(s) 17, 23, 153
SatI GCNGC 4 cut(s) 97, 297, 485, 533
Sau3AI GATC 2 cut(s) 142, 267
SchI GAGTC 1 cut(s) 241
SetI ASST 6 cut(s) 48, 67, 239, 595, 600, 648
SfaNI GCATC 3 cut(s) 138, 193, 670
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 2 cut(s) 152, 450
SmoI CTYRAG 2 cut(s) 152, 450
Sse9I AATT 5 cut(s) 18, 24, 70, 274, 356
SsiI CCGC 4 cut(s) 96, 99, 117, 659
SspMI CTAG 1 cut(s) 647
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 141, 664
TasI AATT 5 cut(s) 18, 24, 70, 274, 356
TatI WGTACW 1 cut(s) 241
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 6 cut(s) 370, 419, 468, 516, 565, 666
Tru1I TTAA 3 cut(s) 17, 23, 153
Tru9I TTAA 3 cut(s) 17, 23, 153
TscAI CASTG 1 cut(s) 112
TseI GCWGC 3 cut(s) 296, 484, 532
TspDTI ATGAA 1 cut(s) 199
TspRI CASTG 1 cut(s) 112
Vha464I CTTAAG 1 cut(s) 152
XagI CCTNNNNNAGG 1 cut(s) 183
XapI RAATTY 2 cut(s) 70, 274
XcmI CCANNNNNNNNNTGG 2 cut(s) 357, 503
XmiI GTMKAC 2 cut(s) 260, 712
XspI CTAG 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.