Prupe.8G174900_v2.0.a1

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000495
Physical Location & Seq
Reverse (-)
17768933 .. 17770599
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G174900.1

Sequence Viewer

Length: 972 bp
ATGTGGTGCTTTCTTTTGGCATTTGTTTCTCTTTTTTTGTTGTCCTCCATCCAAGGAGGCACAGCAGAGCAGTGTGGGAGGCAGGCAGGGGGTGCTCTGTGTCCAGGAGGGCAATGCTGCAGCAAGTATGGGTGGTGTGGCACTGCACCTGATTACTGCAGCACTGGTTGCCAAAGCCAATGTGGCGGCGGCGGTGGTGGCGGTGGCGGTGACATTGGTAGCCTTGTGTCACGTAACACCTTTAATCAGATGCTTAAGCATAGGAATGATGGTGGTTGCCCAGCTAAGGGGTTTTATACCTATGATGCTTTCATTGCAGCTGCCAAGTCCTTTCCTAACTTTGCTAAAACTGGAGATGCTGCCACCCAAAAAAGGGAAATTGCTGCTTTCTTAGCCCAAACTTCACATGAAACTACAGGGGGTTGGGCAAGTGCACCTGATGGACCATACTCTTGGGGGTATTGCTATCTCAAGGAACAAAACCCTGGATCTTATTGTGCCTGGGATCCTAATTATCCATGTGCTGCTGGTAAGCAGTATTATGGCCGTGGTCCAATTCAACTTTCTTGGAACTACAACTACGGACAGTGTGGAAAAGCAATAGGGGAGGACCTGTTGAACAACCCAGACCTAGTTGCTACAGACCCTGTTATTTCATTCAAGACAGCACTCTGGTTCTGGATGACCCCTCAGTCACCCAAGCCCTCATGCCATGATGTGATCACCGGGAGATGGAACCCGTCTGGAGCCGACAAGTCAGCAGGTCGGGTTCCCGGTTACGGGGTCACTACAAATATCATTAACGGTGGACTTGAATGTGGTAAGGGCTGGAACGCTAAGGTGGAGGATCGCATTGGGTTTTACAAGAGGTACTGTGACTTGCTTGGAGTTGGCTATGGCAACAACCTTGACTGCTACAACCAGAAGCCTTTTGGGTCTGATCTCAATGTTATTCAATTGCCTGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

324

Amino Acids

34.59

Weight (kDa)

7.34

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 691
Acc36I ACCTGC 1 cut(s) 752
AciI CCGC 5 cut(s) 186, 189, 192, 201, 207
AclWI GGATC 4 cut(s) 496, 500, 513, 855
AcoI YGGCCR 1 cut(s) 544
AfaI GTAC 1 cut(s) 872
AfiI CCNNNNNNNGG 7 cut(s) 286, 287, 372, 373, 732, 779, 780
AflII CTTAAG 1 cut(s) 254
AgsI TTSAA 5 cut(s) 560, 619, 661, 815, 956
AjnI CCWGG 3 cut(s) 103, 484, 500
AjuI GAANNNNNNNTTGG 2 cut(s) 547, 579
AluBI AGCT 2 cut(s) 284, 320
AluI AGCT 2 cut(s) 284, 320
Alw21I GWGCWC 2 cut(s) 97, 436
Alw44I GTGCAC 1 cut(s) 432
AlwI GGATC 4 cut(s) 496, 500, 513, 855
AlwNI CAGNNNCTG 1 cut(s) 647
AoxI GGCC 1 cut(s) 544
ApaLI GTGCAC 1 cut(s) 432
ApeKI GCWGC 8 cut(s) 117, 120, 159, 317, 320, 359, 383, 524
AspS9I GGNCC 3 cut(s) 443, 551, 610
AsuC2I CCSGG 2 cut(s) 727, 774
AsuHPI GGTGA 3 cut(s) 221, 687, 715
AvaII GGWCC 3 cut(s) 443, 551, 610
BaeGI GKGCMC 1 cut(s) 436
BamHI GGATCC 1 cut(s) 505
Bbv12I GWGCWC 2 cut(s) 97, 436
BbvI GCAGC 8 cut(s) 104, 132, 171, 307, 329, 346, 370, 511
BccI CCATC 4 cut(s) 56, 263, 434, 726
BceAI ACGGC 1 cut(s) 531
BciT130I CCWGG 3 cut(s) 105, 486, 502
BclI TGATCA 1 cut(s) 720
BcnI CCSGG 2 cut(s) 727, 774
BfaI CTAG 1 cut(s) 632
BfmI CTRYAG 4 cut(s) 118, 157, 414, 639
BfrI CTTAAG 1 cut(s) 254
BfuAI ACCTGC 1 cut(s) 752
BglI GCCNNNNNGGC 1 cut(s) 183
Bme1390I CCNGG 5 cut(s) 105, 486, 502, 727, 774
Bme18I GGWCC 3 cut(s) 443, 551, 610
BmgT120I GGNCC 3 cut(s) 443, 551, 610
BmiI GGNNCC 4 cut(s) 507, 737, 748, 771
BmrFI CCNGG 5 cut(s) 105, 486, 502, 727, 774
BmsI GCATC 3 cut(s) 240, 295, 346
BpmI CTGGAG 2 cut(s) 372, 765
Bpu10I CCTNAGC 2 cut(s) 285, 837
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 2 cut(s) 727, 774
BsaAI YACGTR 1 cut(s) 233
BsaJI CCNNGG 4 cut(s) 52, 484, 501, 547
BsaXI ACNNNNNCTCC 2 cut(s) 599, 629
Bsc4I CCNNNNNNNGG 7 cut(s) 286, 287, 372, 373, 732, 779, 780
Bse1I ACTGG 2 cut(s) 169, 355
Bse3DI GCAATG 2 cut(s) 119, 312
BseBI CCWGG 3 cut(s) 105, 486, 502
BseDI CCNNGG 4 cut(s) 52, 484, 501, 547
BseGI GGATG 2 cut(s) 48, 687
BseLI CCNNNNNNNGG 7 cut(s) 286, 287, 372, 373, 732, 779, 780
BseMI GCAATG 2 cut(s) 119, 312
BseMII CTCAG 1 cut(s) 704
BseNI ACTGG 2 cut(s) 169, 355
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 8 cut(s) 104, 132, 171, 307, 329, 346, 370, 511
BseYI CCCAGC 1 cut(s) 280
BsgI GTGCAG 1 cut(s) 129
BshFI GGCC 1 cut(s) 546
BsiHKAI GWGCWC 2 cut(s) 97, 436
BsiSI CCGG 2 cut(s) 726, 774
BslI CCNNNNNNNGG 7 cut(s) 286, 287, 372, 373, 732, 779, 780
BsnI GGCC 1 cut(s) 546
Bsp1286I GDGCHC 2 cut(s) 97, 436
Bsp143I GATC 5 cut(s) 488, 505, 720, 847, 940
BspACI CCGC 5 cut(s) 186, 189, 192, 201, 207
BspANI GGCC 1 cut(s) 546
BspCNI CTCAG 1 cut(s) 703
BspLI GGNNCC 4 cut(s) 507, 737, 748, 771
BspMAI CTGCAG 2 cut(s) 122, 161
BspMI ACCTGC 1 cut(s) 752
BspPI GGATC 4 cut(s) 496, 500, 513, 855
BspTI CTTAAG 1 cut(s) 254
BsrDI GCAATG 2 cut(s) 119, 312
BsrI ACTGG 2 cut(s) 169, 355
BssECI CCNNGG 4 cut(s) 52, 484, 501, 547
BssMI GATC 5 cut(s) 488, 505, 720, 847, 940
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 3 cut(s) 105, 486, 502
Bst4CI ACNGT 3 cut(s) 588, 806, 875
BstAFI CTTAAG 1 cut(s) 254
BstAPI GCANNNNNTGC 2 cut(s) 92, 168
BstBAI YACGTR 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 4 cut(s) 285, 391, 690, 837
BstDSI CCRYGG 1 cut(s) 547
BstF5I GGATG 2 cut(s) 48, 687
BstKTI GATC 5 cut(s) 491, 508, 723, 850, 943
BstMBI GATC 5 cut(s) 488, 505, 720, 847, 940
BstMWI GCNNNNNNNGC 6 cut(s) 92, 168, 183, 198, 314, 392
BstNI CCWGG 3 cut(s) 105, 486, 502
BstSCI CCNGG 5 cut(s) 103, 484, 500, 725, 772
BstSFI CTRYAG 4 cut(s) 118, 157, 414, 639
BstSLI GKGCMC 1 cut(s) 436
BstV1I GCAGC 8 cut(s) 104, 132, 171, 307, 329, 346, 370, 511
BstX2I RGATCY 2 cut(s) 488, 505
BstXI CCANNNNNNTGG 1 cut(s) 453
BstYI RGATCY 2 cut(s) 488, 505
BsuRI GGCC 1 cut(s) 546
BtgI CCRYGG 1 cut(s) 547
BtsCI GGATG 2 cut(s) 48, 687
BtsI GCAGTG 2 cut(s) 77, 141
BtsIMutI CAGTG 4 cut(s) 77, 141, 162, 593
BveI ACCTGC 1 cut(s) 752
Cac8I GCNNGC 1 cut(s) 84
CaiI CAGNNNCTG 1 cut(s) 647
Cfr13I GGNCC 3 cut(s) 443, 551, 610
Csp6I GTAC 1 cut(s) 871
CviAII CATG 4 cut(s) 407, 519, 708, 713
CviQI GTAC 1 cut(s) 871
DdeI CTNAG 4 cut(s) 285, 391, 690, 837
DpnI GATC 5 cut(s) 490, 507, 722, 849, 942
DpnII GATC 5 cut(s) 488, 505, 720, 847, 940
DrdI GACNNNNNNGTC 1 cut(s) 691
DseDI GACNNNNNNGTC 1 cut(s) 691
EaeI YGGCCR 1 cut(s) 544
Eco130I CCWWGG 1 cut(s) 52
Eco47I GGWCC 3 cut(s) 443, 551, 610
EcoO109I RGGNCCY 1 cut(s) 610
EcoRII CCWGG 3 cut(s) 103, 484, 500
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 4 cut(s) 410, 522, 711, 716
FatI CATG 4 cut(s) 406, 518, 707, 712
FbaI TGATCA 1 cut(s) 720
FokI GGATG 2 cut(s) 35, 694
FspBI CTAG 1 cut(s) 632
GsaI CCCAGC 1 cut(s) 284
GsuI CTGGAG 2 cut(s) 372, 765
HaeIII GGCC 1 cut(s) 546
HapII CCGG 2 cut(s) 726, 774
Hin1II CATG 4 cut(s) 410, 522, 711, 716
HpaII CCGG 2 cut(s) 726, 774
HphI GGTGA 3 cut(s) 221, 687, 715
Hpy166II GTNNAC 2 cut(s) 434, 809
Hpy188I TCNGA 2 cut(s) 249, 940
Hpy188III TCNNGA 3 cut(s) 661, 679, 744
Hpy8I GTNNAC 2 cut(s) 434, 809
HpyCH4III ACNGT 3 cut(s) 588, 806, 875
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 5 cut(s) 120, 146, 159, 317, 434
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 168, 183, 198, 314, 392
HpyF3I CTNAG 4 cut(s) 285, 391, 690, 837
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 4 cut(s) 410, 522, 711, 716
Ksp22I TGATCA 1 cut(s) 720
Kzo9I GATC 5 cut(s) 488, 505, 720, 847, 940
LmnI GCTCC 1 cut(s) 746
Lsp1109I GCAGC 8 cut(s) 104, 132, 171, 307, 329, 346, 370, 511
LweI GCATC 3 cut(s) 240, 295, 346
MaeI CTAG 1 cut(s) 632
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 7 cut(s) 209, 228, 233, 693, 776, 784, 875
MalI GATC 5 cut(s) 490, 507, 722, 849, 942
MboI GATC 5 cut(s) 488, 505, 720, 847, 940
MfeI CAATTG 1 cut(s) 956
MflI RGATCY 2 cut(s) 488, 505
MhlI GDGCHC 2 cut(s) 97, 436
MluCI AATT 5 cut(s) 378, 511, 555, 956, 967
MnlI CCTC 9 cut(s) 50, 55, 72, 101, 601, 699, 715, 838, 861
MseI TTAA 4 cut(s) 243, 255, 801, 970
MslI CAYNNNNRTG 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 320
MspCI CTTAAG 1 cut(s) 254
MspI CCGG 2 cut(s) 726, 774
MspR9I CCNGG 5 cut(s) 105, 486, 502, 727, 774
MunI CAATTG 1 cut(s) 956
MvaI CCWGG 3 cut(s) 105, 486, 502
MwoI GCNNNNNNNGC 6 cut(s) 92, 168, 183, 198, 314, 392
NciI CCSGG 2 cut(s) 727, 774
NdeII GATC 5 cut(s) 488, 505, 720, 847, 940
NlaIII CATG 4 cut(s) 410, 522, 711, 716
NlaIV GGNNCC 4 cut(s) 507, 737, 748, 771
NmuCI GTSAC 5 cut(s) 209, 228, 693, 784, 875
PfoI TCCNGGA 1 cut(s) 103
Ppu21I YACGTR 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 610
Psp5II RGGWCCY 1 cut(s) 610
Psp6I CCWGG 3 cut(s) 103, 484, 500
PspFI CCCAGC 1 cut(s) 280
PspGI CCWGG 3 cut(s) 103, 484, 500
PspN4I GGNNCC 4 cut(s) 507, 737, 748, 771
PspPI GGNCC 3 cut(s) 443, 551, 610
PspPPI RGGWCCY 1 cut(s) 610
PsrI GAACNNNNNNTAC 2 cut(s) 563, 595
PstI CTGCAG 2 cut(s) 122, 161
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 2 cut(s) 488, 505
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 1 cut(s) 872
RsaNI GTAC 1 cut(s) 871
RseI CAYNNNNRTG 1 cut(s) 264
SaqAI TTAA 4 cut(s) 243, 255, 801, 970
Sau3AI GATC 5 cut(s) 488, 505, 720, 847, 940
Sau96I GGNCC 3 cut(s) 443, 551, 610
ScrFI CCNGG 5 cut(s) 105, 486, 502, 727, 774
SduI GDGCHC 2 cut(s) 97, 436
SfaNI GCATC 3 cut(s) 240, 295, 346
SfcI CTRYAG 4 cut(s) 118, 157, 414, 639
SinI GGWCC 3 cut(s) 443, 551, 610
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 2 cut(s) 254, 470
SmoI CTYRAG 2 cut(s) 254, 470
Sse9I AATT 5 cut(s) 378, 511, 555, 956, 967
SsiI CCGC 5 cut(s) 186, 189, 192, 201, 207
SspMI CTAG 1 cut(s) 632
StyD4I CCNGG 5 cut(s) 103, 484, 500, 725, 772
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 3 cut(s) 588, 806, 875
TaiI ACGT 1 cut(s) 235
TasI AATT 5 cut(s) 378, 511, 555, 956, 967
TauI GCSGC 2 cut(s) 189, 192
Tru1I TTAA 4 cut(s) 243, 255, 801, 970
Tru9I TTAA 4 cut(s) 243, 255, 801, 970
TscAI CASTG 4 cut(s) 77, 148, 169, 593
TseFI GTSAC 5 cut(s) 209, 228, 693, 784, 875
TseI GCWGC 8 cut(s) 117, 120, 159, 317, 320, 359, 383, 524
Tsp45I GTSAC 5 cut(s) 209, 228, 693, 784, 875
TspDTI ATGAA 3 cut(s) 301, 423, 645
TspGWI ACGGA 1 cut(s) 597
TspRI CASTG 4 cut(s) 77, 148, 169, 593
Vha464I CTTAAG 1 cut(s) 254
VneI GTGCAC 1 cut(s) 432
VpaK11BI GGWCC 3 cut(s) 443, 551, 610
XcmI CCANNNNNNNNNTGG 2 cut(s) 179, 929
XspI CTAG 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.