Rh6BG241000

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000495
Physical Location & Seq
Reverse (-)
44869670 .. 44877507
7838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG241000.1

Sequence Viewer

Length: 441 bp
ATGAGTATATTGTTTATGATACGGCTCAAGAGCTACAACTACGGGCAGTGTGGAAAGGCCATAGGAGCGAACCTGTTGAACGACCCGGACCTTGTTGCCACAGACCCTGTCATCTCCTTCAAGACAGCAATCTGGTTTTGGATGACCCCTCAGTCACCCAAGTCCTCATGCCATGATGTCATCACCTGGAGATGGAACCCTTCCGGAGCTGACCAGTCAGCGGGTAGGTATTCCGGGTATGGTACGATCACAAATATCATCAACGGTGGACTCGAATGTGGTAAAGGATGGGATGGGAGAGTGGCGGACTGCATTGGGTTTTTCAAGAGGTACTGTGATTTGCTTGGGACTGGTTATGGTGACAAACTTGACTGTCATAATCAGAAGCCTTTTGGGTCCGGACTCAGTACTTATTATTCATCCTCGAAAGAGTCGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

146

Amino Acids

16.09

Weight (kDa)

8.19

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 11 - 125 5.9e-59 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 151
AccIII TCCGGA 2 cut(s) 203, 398
AciI CCGC 2 cut(s) 221, 305
AfaI GTAC 3 cut(s) 244, 332, 409
AfiI CCNNNNNNNGG 2 cut(s) 192, 220
AgsI TTSAA 3 cut(s) 79, 121, 325
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 2 cut(s) 33, 209
AluI AGCT 2 cut(s) 33, 209
AlwNI CAGNNNCTG 1 cut(s) 107
Aor13HI TCCGGA 2 cut(s) 203, 398
AoxI GGCC 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 88, 396
AsuC2I CCSGG 2 cut(s) 86, 235
AsuHPI GGTGA 3 cut(s) 147, 175, 371
AvaII GGWCC 2 cut(s) 88, 396
BccI CCATC 3 cut(s) 186, 282, 287
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 187
BcnI CCSGG 2 cut(s) 86, 235
BmcAI AGTACT 1 cut(s) 409
Bme1390I CCNGG 3 cut(s) 86, 187, 235
Bme18I GGWCC 2 cut(s) 88, 396
BmgT120I GGNCC 2 cut(s) 88, 396
BmiI GGNNCC 2 cut(s) 197, 397
BmrFI CCNGG 3 cut(s) 86, 187, 235
BpmI CTGGAG 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 11
BpuMI CCSGG 2 cut(s) 86, 235
BsaWI WCCGGW 2 cut(s) 203, 398
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 220
Bse1I ACTGG 2 cut(s) 214, 355
BseAI TCCGGA 2 cut(s) 203, 398
BseBI CCWGG 1 cut(s) 187
BseGI GGATG 4 cut(s) 147, 293, 298, 419
BseLI CCNNNNNNNGG 2 cut(s) 192, 220
BseMII CTCAG 2 cut(s) 164, 418
BseNI ACTGG 2 cut(s) 214, 355
BshFI GGCC 1 cut(s) 59
BsiSI CCGG 4 cut(s) 86, 204, 234, 399
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 2 cut(s) 192, 220
BsmFI GGGAC 1 cut(s) 361
BsnI GGCC 1 cut(s) 59
Bsp13I TCCGGA 2 cut(s) 203, 398
Bsp143I GATC 1 cut(s) 246
BspACI CCGC 2 cut(s) 221, 305
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 2 cut(s) 163, 417
BspEI TCCGGA 2 cut(s) 203, 398
BspLI GGNNCC 2 cut(s) 197, 397
BsrI ACTGG 2 cut(s) 214, 355
BssMI GATC 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 3 cut(s) 266, 335, 374
BstDEI CTNAG 2 cut(s) 150, 404
BstF5I GGATG 4 cut(s) 147, 293, 298, 419
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 3 cut(s) 84, 185, 233
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 4 cut(s) 147, 293, 298, 419
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 53
CaiI CAGNNNCTG 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 88, 396
Csp6I GTAC 3 cut(s) 243, 331, 408
CviAII CATG 2 cut(s) 168, 173
CviJI RGCY 5 cut(s) 25, 33, 59, 209, 388
CviKI_1 RGCY 5 cut(s) 25, 33, 59, 209, 388
CviQI GTAC 3 cut(s) 243, 331, 408
DdeI CTNAG 2 cut(s) 150, 404
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
DrdI GACNNNNNNGTC 1 cut(s) 151
DseDI GACNNNNNNGTC 1 cut(s) 151
EciI GGCGGA 1 cut(s) 320
Eco47I GGWCC 2 cut(s) 88, 396
EcoRII CCWGG 1 cut(s) 185
FaeI CATG 2 cut(s) 171, 176
FaiI YATR 8 cut(s) 8, 17, 62, 169, 174, 240, 357, 378
FaqI GGGAC 1 cut(s) 361
FatI CATG 2 cut(s) 167, 172
FauI CCCGC 1 cut(s) 214
FokI GGATG 4 cut(s) 154, 300, 305, 406
GsuI CTGGAG 1 cut(s) 208
HaeIII GGCC 1 cut(s) 59
HapII CCGG 4 cut(s) 86, 204, 234, 399
Hin1II CATG 2 cut(s) 171, 176
HinfI GANTC 3 cut(s) 270, 402, 431
HpaII CCGG 4 cut(s) 86, 204, 234, 399
HphI GGTGA 3 cut(s) 147, 175, 371
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 1 cut(s) 384
Hpy188III TCNNGA 5 cut(s) 28, 121, 204, 325, 399
Hpy8I GTNNAC 1 cut(s) 269
HpyAV CCTTC 2 cut(s) 127, 210
HpyCH4III ACNGT 3 cut(s) 266, 335, 374
HpyCH4V TGCA 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 150, 404
Hsp92II CATG 2 cut(s) 171, 176
Kpn2I TCCGGA 2 cut(s) 203, 398
Kzo9I GATC 1 cut(s) 246
LmnI GCTCC 2 cut(s) 65, 206
MaeIII GTNAC 2 cut(s) 153, 359
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MlyI GAGTC 3 cut(s) 264, 396, 440
MnlI CCTC 4 cut(s) 159, 175, 321, 433
MroI TCCGGA 2 cut(s) 203, 398
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 4 cut(s) 86, 204, 234, 399
MspR9I CCNGG 3 cut(s) 86, 187, 235
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 65
NciI CCSGG 2 cut(s) 86, 235
NdeII GATC 1 cut(s) 246
NlaIII CATG 2 cut(s) 171, 176
NlaIV GGNNCC 2 cut(s) 197, 397
NmuCI GTSAC 2 cut(s) 153, 359
PcsI WCGNNNNNNNCGW 2 cut(s) 270, 431
PflFI GACNNNGTC 1 cut(s) 107
PleI GAGTC 3 cut(s) 264, 396, 439
PpsI GAGTC 3 cut(s) 264, 396, 439
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 197, 397
PspPI GGNCC 2 cut(s) 88, 396
PstNI CAGNNNCTG 1 cut(s) 107
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 3 cut(s) 244, 332, 409
RsaNI GTAC 3 cut(s) 243, 331, 408
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 2 cut(s) 88, 396
ScaI AGTACT 1 cut(s) 409
SchI GAGTC 3 cut(s) 264, 396, 440
ScrFI CCNGG 3 cut(s) 86, 187, 235
SetI ASST 7 cut(s) 35, 75, 93, 188, 211, 230, 332
SinI GGWCC 2 cut(s) 88, 396
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SsiI CCGC 2 cut(s) 221, 305
StyD4I CCNGG 3 cut(s) 84, 185, 233
TaaI ACNGT 3 cut(s) 266, 335, 374
TaqI TCGA 3 cut(s) 273, 425, 434
TatI WGTACW 1 cut(s) 407
TscAI CASTG 1 cut(s) 53
TseFI GTSAC 2 cut(s) 153, 359
Tsp45I GTSAC 2 cut(s) 153, 359
TspDTI ATGAA 1 cut(s) 408
TspRI CASTG 1 cut(s) 53
Tth111I GACNNNGTC 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 88, 396
ZrmI AGTACT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.