Rh6AG236800

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000495
Physical Location & Seq
Reverse (-)
42212905 .. 42217049
4145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG236800.1

Sequence Viewer

Length: 432 bp
ATGTCTGGTGTGGCACTACACCTGATTATTGCGGCAACGGTTGCCAAAGCCAATGCTGCCGCGGGTCTAGTATCACAGAACACCTTTGATCAGATACTTAAGCATCGAAACGAGGGTGGTTGCCCTGCCAAATGGTTTTATACTTATGATGCTTTTATTGCAGCTGCCAAGGCTTTCCCCGGCTTTGCTACTACTGGTGACACTGCCACCCGTAAAAGGGAGATTGCTGCTTTCTTAGCCCAAACTTCTCATGAAACTACTGAATGCGCGCAACTCATAAAATTTCGGGGGGATGGGGGACTGCCCCTGATGGACCATACTCATGGGGCTATTGTTAATTATAACACGGAGCAAAATCCAGGAGCTTACTGTGCCTGCTGGGATCCAAATTACCCATGTGCTGCCGGTAAGCAGTATTATGGCCGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

143

Amino Acids

15.34

Weight (kDa)

7.66

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 23 - 143 2.7e-35 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AccII CGCG 2 cut(s) 62, 269
AciI CCGC 3 cut(s) 32, 60, 62
AclWI GGATC 2 cut(s) 377, 390
AcoI YGGCCR 1 cut(s) 421
AcsI RAATTY 1 cut(s) 281
AfiI CCNNNNNNNGG 2 cut(s) 216, 217
AflII CTTAAG 1 cut(s) 98
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 2 cut(s) 164, 365
AluI AGCT 2 cut(s) 164, 365
AlwI GGATC 2 cut(s) 377, 390
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 5 cut(s) 56, 161, 164, 227, 401
ApoI RAATTY 1 cut(s) 281
AspLEI GCGC 2 cut(s) 269, 271
AspS9I GGNCC 1 cut(s) 313
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 1 cut(s) 313
BamHI GGATCC 1 cut(s) 382
BbvI GCAGC 5 cut(s) 43, 151, 173, 214, 388
BccI CCATC 2 cut(s) 287, 304
BceAI ACGGC 1 cut(s) 408
BciT130I CCWGG 1 cut(s) 360
BclI TGATCA 1 cut(s) 88
BcnI CCSGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 98
BisI GCNGC 7 cut(s) 33, 57, 60, 162, 165, 228, 402
BlsI GCNGC 7 cut(s) 34, 58, 61, 163, 166, 229, 403
Bme1390I CCNGG 2 cut(s) 180, 360
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 2 cut(s) 180, 360
BmsI GCATC 2 cut(s) 112, 139
BpuMI CCSGG 1 cut(s) 180
BsaJI CCNNGG 4 cut(s) 60, 168, 178, 424
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 217
Bse118I RCCGGY 1 cut(s) 404
Bse1I ACTGG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 4 cut(s) 60, 168, 178, 424
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 2 cut(s) 216, 217
BseNI ACTGG 1 cut(s) 199
BsePI GCGCGC 1 cut(s) 267
BseXI GCAGC 5 cut(s) 43, 151, 173, 214, 388
BseYI CCCAGC 1 cut(s) 378
Bsh1236I CGCG 2 cut(s) 62, 269
BshFI GGCC 1 cut(s) 423
BsiSI CCGG 2 cut(s) 180, 405
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 2 cut(s) 216, 217
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 1 cut(s) 423
Bsp143I GATC 2 cut(s) 88, 382
BspACI CCGC 3 cut(s) 32, 60, 62
BspANI GGCC 1 cut(s) 423
BspFNI CGCG 2 cut(s) 62, 269
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 384
BspPI GGATC 2 cut(s) 377, 390
BspTI CTTAAG 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 404
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 404
BssECI CCNNGG 4 cut(s) 60, 168, 178, 424
BssHII GCGCGC 1 cut(s) 267
BssMI GATC 2 cut(s) 88, 382
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 2 cut(s) 40, 371
BstAFI CTTAAG 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 269, 376
BstDEI CTNAG 1 cut(s) 235
BstDSI CCRYGG 2 cut(s) 60, 424
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 2 cut(s) 62, 269
BstHHI GCGC 2 cut(s) 269, 271
BstKTI GATC 2 cut(s) 91, 385
BstMBI GATC 2 cut(s) 88, 382
BstMWI GCNNNNNNNGC 6 cut(s) 41, 56, 158, 170, 236, 371
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 2 cut(s) 178, 358
BstUI CGCG 2 cut(s) 62, 269
BstV1I GCAGC 5 cut(s) 43, 151, 173, 214, 388
BstX2I RGATCY 1 cut(s) 382
BstXI CCANNNNNNTGG 1 cut(s) 323
BstYI RGATCY 1 cut(s) 382
BsuRI GGCC 1 cut(s) 423
BtgI CCRYGG 2 cut(s) 60, 424
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 269, 376
CciI TCATGA 1 cut(s) 250
CfoI GCGC 2 cut(s) 269, 271
Cfr10I RCCGGY 1 cut(s) 404
Cfr13I GGNCC 1 cut(s) 313
Cfr42I CCGCGG 1 cut(s) 63
CviAII CATG 3 cut(s) 251, 323, 396
CviJI RGCY 8 cut(s) 50, 164, 173, 183, 239, 329, 365, 423
CviKI_1 RGCY 8 cut(s) 50, 164, 173, 183, 239, 329, 365, 423
DdeI CTNAG 1 cut(s) 235
DpnI GATC 2 cut(s) 90, 384
DpnII GATC 2 cut(s) 88, 382
EaeI YGGCCR 1 cut(s) 421
Eco130I CCWWGG 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 3 cut(s) 254, 326, 399
FaiI YATR 9 cut(s) 141, 147, 252, 278, 318, 324, 342, 397, 420
FaqI GGGAC 1 cut(s) 312
FatI CATG 3 cut(s) 250, 322, 395
FauI CCCGC 1 cut(s) 55
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 7 cut(s) 33, 57, 60, 162, 165, 228, 402
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 7 cut(s) 33, 57, 60, 162, 165, 228, 402
FspBI CTAG 1 cut(s) 68
GlaI GCGC 2 cut(s) 268, 270
GluI GCNGC 7 cut(s) 33, 57, 60, 162, 165, 228, 402
GsaI CCCAGC 1 cut(s) 382
HaeIII GGCC 1 cut(s) 423
HapII CCGG 2 cut(s) 180, 405
HhaI GCGC 2 cut(s) 269, 271
Hin1II CATG 3 cut(s) 254, 326, 399
Hin6I GCGC 2 cut(s) 267, 269
HinP1I GCGC 2 cut(s) 267, 269
HpaII CCGG 2 cut(s) 180, 405
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 251
HpyCH4III ACNGT 2 cut(s) 40, 371
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 56, 158, 170, 236, 371
HpyF3I CTNAG 1 cut(s) 235
Hsp92II CATG 3 cut(s) 254, 326, 399
HspAI GCGC 2 cut(s) 267, 269
Ksp22I TGATCA 1 cut(s) 88
KspI CCGCGG 1 cut(s) 63
Kzo9I GATC 2 cut(s) 88, 382
LmnI GCTCC 2 cut(s) 349, 362
Lsp1109I GCAGC 5 cut(s) 43, 151, 173, 214, 388
LweI GCATC 2 cut(s) 112, 139
MaeI CTAG 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 90, 384
MboI GATC 2 cut(s) 88, 382
MflI RGATCY 1 cut(s) 382
MluCI AATT 3 cut(s) 281, 337, 388
MnlI CCTC 1 cut(s) 106
MseI TTAA 3 cut(s) 99, 336, 430
MslI CAYNNNNRTG 1 cut(s) 321
MspA1I CMGCKG 2 cut(s) 62, 164
MspCI CTTAAG 1 cut(s) 98
MspI CCGG 2 cut(s) 180, 405
MspR9I CCNGG 2 cut(s) 180, 360
Mva1269I GAATGC 1 cut(s) 269
MvaI CCWGG 1 cut(s) 360
MvnI CGCG 2 cut(s) 62, 269
MwoI GCNNNNNNNGC 6 cut(s) 41, 56, 158, 170, 236, 371
NciI CCSGG 1 cut(s) 180
NdeII GATC 2 cut(s) 88, 382
NlaIII CATG 3 cut(s) 254, 326, 399
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 197
PagI TCATGA 1 cut(s) 250
PauI GCGCGC 1 cut(s) 267
PctI GAATGC 1 cut(s) 269
PfoI TCCNGGA 1 cut(s) 358
PkrI GCNGC 7 cut(s) 34, 58, 61, 163, 166, 229, 403
PsiI TTATAA 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 358
PspFI CCCAGC 1 cut(s) 378
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 1 cut(s) 313
PsuI RGATCY 1 cut(s) 382
PteI GCGCGC 1 cut(s) 267
PvuII CAGCTG 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 321
SacII CCGCGG 1 cut(s) 63
SaqAI TTAA 3 cut(s) 99, 336, 430
SatI GCNGC 7 cut(s) 33, 57, 60, 162, 165, 228, 402
Sau3AI GATC 2 cut(s) 88, 382
Sau96I GGNCC 1 cut(s) 313
ScrFI CCNGG 2 cut(s) 180, 360
SetI ASST 4 cut(s) 24, 86, 166, 367
SfaNI GCATC 2 cut(s) 112, 139
Sfr303I CCGCGG 1 cut(s) 63
SgrBI CCGCGG 1 cut(s) 63
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 3 cut(s) 281, 337, 388
SsiI CCGC 3 cut(s) 32, 60, 62
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 2 cut(s) 178, 358
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 2 cut(s) 40, 371
TaqI TCGA 1 cut(s) 106
TasI AATT 3 cut(s) 281, 337, 388
TauI GCSGC 2 cut(s) 35, 62
Tru1I TTAA 3 cut(s) 99, 336, 430
Tru9I TTAA 3 cut(s) 99, 336, 430
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 5 cut(s) 56, 161, 164, 227, 401
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 267
TspGWI ACGGA 1 cut(s) 362
TspRI CASTG 1 cut(s) 208
Vha464I CTTAAG 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 1 cut(s) 281
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.