Rh6CG243300

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000495
Physical Location & Seq
Reverse (-)
41001389 .. 41002351
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG243300.1

Sequence Viewer

Length: 600 bp
ATGAATAGAATGCGCGCAACTCATAAAATTTCAGGGGGATGGGGGACTGCCCCTGATGGACCATACTCATGGGGCTATTGTTATAACACGGAGCAAAATCCAGGAGCTTACTGTGCCTGCTGGGATCCAAATTACCCATGTGCTGCCGGTAAGCAGTATTATGGCCGTGGTTCTATTCAACTTTCTTGGAGCTACAACTACGGGCAGTGTGGAAAGGCCATAGGAGCGAACCTGTTGAACGACCCGGACCTTGTTGCCACAGACCCTGTCATCTCCTTCAAGACAGCAATCTGGTTCTGGATGACCCCTCAGTCACCCAAGCCCTCATGCCATGATGTCATCACCTGGAGATGGAACCCTTCCGGAGCTGATCTGTCAGCGGGTAGGTATTCCGGGTATGGTACGATCACAAATATCATCAATGGTGGACTCGAATGTGGTAAAGGATGGGATGGGAGAGTGGCGGACTGCATTGGGTTTTTCAAGAGGTACTGTGATTTGCTTGGGACTGGTTATGGTGACAAACTTGACTGTTACAATCAGAAGCCTTTAGGGTCTGGACTCAGTACTTATTATTCATCCTCGAAAGAGTCGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

199

Amino Acids

21.89

Weight (kDa)

7.98

Isoelectric Point (pI)

29.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 6 - 178 2.9e-83 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AasI GACNNNNNNGTC 1 cut(s) 310
AccII CGCG 1 cut(s) 15
AccIII TCCGGA 1 cut(s) 362
AciI CCGC 2 cut(s) 380, 464
AclWI GGATC 2 cut(s) 119, 132
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 1 cut(s) 27
AfaI GTAC 3 cut(s) 403, 491, 568
AfiI CCNNNNNNNGG 1 cut(s) 351
AgsI TTSAA 4 cut(s) 179, 238, 280, 484
AjnI CCWGG 2 cut(s) 100, 344
AluBI AGCT 3 cut(s) 107, 192, 368
AluI AGCT 3 cut(s) 107, 192, 368
AlwI GGATC 2 cut(s) 119, 132
AlwNI CAGNNNCTG 1 cut(s) 266
Aor13HI TCCGGA 1 cut(s) 362
AoxI GGCC 2 cut(s) 163, 216
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 27
AspLEI GCGC 2 cut(s) 15, 17
AspS9I GGNCC 2 cut(s) 59, 247
AsuC2I CCSGG 2 cut(s) 245, 394
AsuHPI GGTGA 3 cut(s) 306, 334, 530
AvaII GGWCC 2 cut(s) 59, 247
BamHI GGATCC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 130
BccI CCATC 5 cut(s) 33, 50, 345, 441, 446
BceAI ACGGC 1 cut(s) 150
BciT130I CCWGG 2 cut(s) 102, 346
BcnI CCSGG 2 cut(s) 245, 394
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
BmcAI AGTACT 1 cut(s) 568
Bme1390I CCNGG 4 cut(s) 102, 245, 346, 394
Bme18I GGWCC 2 cut(s) 59, 247
BmgT120I GGNCC 2 cut(s) 59, 247
BmiI GGNNCC 2 cut(s) 126, 356
BmrFI CCNGG 4 cut(s) 102, 245, 346, 394
BpmI CTGGAG 1 cut(s) 367
BpuMI CCSGG 2 cut(s) 245, 394
BsaJI CCNNGG 1 cut(s) 166
BsaWI WCCGGW 1 cut(s) 362
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 514
BseAI TCCGGA 1 cut(s) 362
BseBI CCWGG 2 cut(s) 102, 346
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 5 cut(s) 44, 306, 452, 457, 578
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMII CTCAG 2 cut(s) 323, 577
BseNI ACTGG 1 cut(s) 514
BsePI GCGCGC 1 cut(s) 13
BseXI GCAGC 1 cut(s) 130
BseYI CCCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 2 cut(s) 165, 218
BsiSI CCGG 4 cut(s) 147, 245, 363, 393
BslFI GGGAC 2 cut(s) 58, 520
BslI CCNNNNNNNGG 1 cut(s) 351
BsmFI GGGAC 2 cut(s) 58, 520
BsmI GAATGC 1 cut(s) 15
BsnI GGCC 2 cut(s) 165, 218
Bsp13I TCCGGA 1 cut(s) 362
Bsp143I GATC 3 cut(s) 124, 370, 405
BspACI CCGC 2 cut(s) 380, 464
BspANI GGCC 2 cut(s) 165, 218
BspCNI CTCAG 2 cut(s) 322, 576
BspEI TCCGGA 1 cut(s) 362
BspFNI CGCG 1 cut(s) 15
BspLI GGNNCC 2 cut(s) 126, 356
BspPI GGATC 2 cut(s) 119, 132
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 166
BssHII GCGCGC 1 cut(s) 13
BssMI GATC 3 cut(s) 124, 370, 405
Bst2UI CCWGG 2 cut(s) 102, 346
Bst4CI ACNGT 3 cut(s) 113, 494, 533
BstC8I GCNNGC 2 cut(s) 15, 118
BstDEI CTNAG 2 cut(s) 309, 563
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 5 cut(s) 44, 306, 452, 457, 578
BstFNI CGCG 1 cut(s) 15
BstHHI GCGC 2 cut(s) 15, 17
BstKTI GATC 3 cut(s) 127, 373, 408
BstMBI GATC 3 cut(s) 124, 370, 405
BstMWI GCNNNNNNNGC 2 cut(s) 113, 224
BstNI CCWGG 2 cut(s) 102, 346
BstSCI CCNGG 4 cut(s) 100, 243, 344, 392
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 130
BstX2I RGATCY 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 69
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 2 cut(s) 165, 218
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 5 cut(s) 44, 306, 452, 457, 578
BtsI GCAGTG 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 212
Cac8I GCNNGC 2 cut(s) 15, 118
CaiI CAGNNNCTG 1 cut(s) 266
CfoI GCGC 2 cut(s) 15, 17
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 2 cut(s) 59, 247
Csp6I GTAC 3 cut(s) 402, 490, 567
CviAII CATG 4 cut(s) 69, 138, 327, 332
CviJI RGCY 8 cut(s) 75, 107, 165, 192, 218, 322, 368, 547
CviKI_1 RGCY 8 cut(s) 75, 107, 165, 192, 218, 322, 368, 547
CviQI GTAC 3 cut(s) 402, 490, 567
DdeI CTNAG 2 cut(s) 309, 563
DpnI GATC 3 cut(s) 126, 372, 407
DpnII GATC 3 cut(s) 124, 370, 405
DrdI GACNNNNNNGTC 1 cut(s) 310
DseDI GACNNNNNNGTC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 163
EciI GGCGGA 1 cut(s) 479
Eco47I GGWCC 2 cut(s) 59, 247
EcoRII CCWGG 2 cut(s) 100, 344
FaeI CATG 4 cut(s) 72, 141, 330, 335
FaqI GGGAC 2 cut(s) 58, 520
FatI CATG 4 cut(s) 68, 137, 326, 331
FauI CCCGC 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 5 cut(s) 51, 313, 459, 464, 565
Fsp4HI GCNGC 1 cut(s) 144
GlaI GCGC 2 cut(s) 14, 16
GluI GCNGC 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 124
GsuI CTGGAG 1 cut(s) 367
HaeIII GGCC 2 cut(s) 165, 218
HapII CCGG 4 cut(s) 147, 245, 363, 393
HhaI GCGC 2 cut(s) 15, 17
Hin1II CATG 4 cut(s) 72, 141, 330, 335
Hin6I GCGC 2 cut(s) 13, 15
HinP1I GCGC 2 cut(s) 13, 15
HinfI GANTC 3 cut(s) 429, 561, 590
HpaII CCGG 4 cut(s) 147, 245, 363, 393
HphI GGTGA 3 cut(s) 306, 334, 530
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 1 cut(s) 543
Hpy188III TCNNGA 5 cut(s) 280, 298, 363, 484, 558
Hpy8I GTNNAC 1 cut(s) 428
HpyAV CCTTC 2 cut(s) 286, 369
HpyCH4III ACNGT 3 cut(s) 113, 494, 533
HpyCH4V TGCA 1 cut(s) 471
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 224
HpyF3I CTNAG 2 cut(s) 309, 563
Hsp92II CATG 4 cut(s) 72, 141, 330, 335
HspAI GCGC 2 cut(s) 13, 15
Kpn2I TCCGGA 1 cut(s) 362
Kzo9I GATC 3 cut(s) 124, 370, 405
LmnI GCTCC 5 cut(s) 91, 104, 189, 224, 365
Lsp1109I GCAGC 1 cut(s) 130
MaeIII GTNAC 3 cut(s) 312, 518, 533
MalI GATC 3 cut(s) 126, 372, 407
MboI GATC 3 cut(s) 124, 370, 405
MflI RGATCY 1 cut(s) 124
MluCI AATT 2 cut(s) 27, 130
MlyI GAGTC 3 cut(s) 423, 555, 599
MnlI CCTC 4 cut(s) 318, 334, 480, 592
MroI TCCGGA 1 cut(s) 362
MslI CAYNNNNRTG 1 cut(s) 67
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 4 cut(s) 147, 245, 363, 393
MspR9I CCNGG 4 cut(s) 102, 245, 346, 394
Mva1269I GAATGC 1 cut(s) 15
MvaI CCWGG 2 cut(s) 102, 346
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 2 cut(s) 113, 224
NciI CCSGG 2 cut(s) 245, 394
NdeII GATC 3 cut(s) 124, 370, 405
NlaIII CATG 4 cut(s) 72, 141, 330, 335
NlaIV GGNNCC 2 cut(s) 126, 356
NmuCI GTSAC 2 cut(s) 312, 518
PauI GCGCGC 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 590
PctI GAATGC 1 cut(s) 15
PflFI GACNNNGTC 1 cut(s) 266
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 3 cut(s) 423, 555, 598
PpsI GAGTC 3 cut(s) 423, 555, 598
PsiI TTATAA 1 cut(s) 84
Psp6I CCWGG 2 cut(s) 100, 344
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 2 cut(s) 100, 344
PspN4I GGNNCC 2 cut(s) 126, 356
PspPI GGNCC 2 cut(s) 59, 247
PstNI CAGNNNCTG 1 cut(s) 266
PsuI RGATCY 1 cut(s) 124
PsyI GACNNNGTC 1 cut(s) 266
PteI GCGCGC 1 cut(s) 13
RsaI GTAC 3 cut(s) 403, 491, 568
RsaNI GTAC 3 cut(s) 402, 490, 567
RseI CAYNNNNRTG 1 cut(s) 67
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 3 cut(s) 124, 370, 405
Sau96I GGNCC 2 cut(s) 59, 247
ScaI AGTACT 1 cut(s) 568
SchI GAGTC 3 cut(s) 423, 555, 599
ScrFI CCNGG 4 cut(s) 102, 245, 346, 394
SetI ASST 8 cut(s) 109, 194, 234, 252, 347, 370, 389, 491
SinI GGWCC 2 cut(s) 59, 247
SmiMI CAYNNNNRTG 1 cut(s) 67
Sse9I AATT 2 cut(s) 27, 130
SsiI CCGC 2 cut(s) 380, 464
StyD4I CCNGG 4 cut(s) 100, 243, 344, 392
TaaI ACNGT 3 cut(s) 113, 494, 533
TaqI TCGA 3 cut(s) 432, 584, 593
TasI AATT 2 cut(s) 27, 130
TatI WGTACW 1 cut(s) 566
TscAI CASTG 1 cut(s) 212
TseFI GTSAC 2 cut(s) 312, 518
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 2 cut(s) 312, 518
TspDTI ATGAA 2 cut(s) 17, 567
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 1 cut(s) 212
Tth111I GACNNNGTC 1 cut(s) 266
VpaK11BI GGWCC 2 cut(s) 59, 247
XapI RAATTY 1 cut(s) 27
ZrmI AGTACT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.