Rroxscaffold_7G00188570

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000495
Physical Location & Seq
Forward (+)
28160359 .. 28161920
1562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188570.1

Sequence Viewer

Length: 861 bp
ATGTGGAAGGCAAGCAGGGGGGCTTCGTGCCCGGGAGGGCAGTGCTGCAGCAAGTTTGGCTGGTGTGGCACTACACCTGATTACTGCGGCACCGGTTGCCAAAGCCAATGTGGCGGTGGTGGTGGCGGGGGCGGTGGTGACATTGGGGCTCTAGTATCAAAGGCCACCTTTAATCAGATACTTAAGCATCGGAACGATGGTGGTTGCCCTGCCAAAGGGTTTTATACTTATGATGCTTTCATTGCAGCTGCCAAGGCTTTCCCCGCCTTTGCTACAACTGGTGACACTGCCACCCGGGGATGGGGGACTGCACCTGATGGACCCTATGCATGGGGCTATTGTTTTAACAAGGAGAAAAATCCAGGATCTTACTGTGCCTCGGATCCAAATTATCCATGTGCTGCTGGTAAGCAGTATTATGGCCGTGGTCCTATTCAACTTTCTTGGAACTACAACTACGGGCAGTGTGGAAAGGCAATAGGAGCGAACCTGTTGCAAGACCCGGACCTTGTTGCCACAGACCCTGTCATCTCCTTCAAGACAGCAATCTGGTTCTGGATGACCCCTCAGTCACCCAAGCCCTCATGCCATGATGTCATCACCTGGAGATGGAACCCTTCCGGAGCTGATCAGTCAGCGGGTAGGTATTCCGGGTATGGTACGATCACAAATATCATCAACGGTGGACTCGAATGTGGTAAAGGATGGGATGGGAGAGTGGCGGACCGCATTGGGTTTTCAAGAGGTACTGTGATTTGCTTGGGATTGGTTATGGTGACAACCTTGACTGTTATAATCAGAAGCCTTTTGGGTCTGGACTCAGTACTTATTATTCATCCTCAAGAGAGTCGATCGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

286

Amino Acids

30.29

Weight (kDa)

8.57

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chitin_bind_1 PF00187 5 - 37 3.1e-12 Chitin recognition protein
Glyco_hydro_19 PF00182 51 - 99 3.4e-18 Chitinase class I
Glyco_hydro_19 PF00182 98 - 255 5.4e-78 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 794
AasI GACNNNNNNGTC 1 cut(s) 568
AccB1I GGYRCC 1 cut(s) 89
AccIII TCCGGA 1 cut(s) 620
AciI CCGC 8 cut(s) 87, 114, 126, 132, 264, 638, 722, 727
AclWI GGATC 3 cut(s) 373, 377, 390
AcoI YGGCCR 1 cut(s) 421
AfaI GTAC 3 cut(s) 661, 748, 825
AfiI CCNNNNNNNGG 5 cut(s) 215, 300, 301, 330, 609
AflII CTTAAG 1 cut(s) 182
AgeI ACCGGT 1 cut(s) 92
AgsI TTSAA 3 cut(s) 437, 538, 741
AjnI CCWGG 2 cut(s) 361, 602
AluBI AGCT 2 cut(s) 248, 626
AluI AGCT 2 cut(s) 248, 626
AlwI GGATC 3 cut(s) 373, 377, 390
AlwNI CAGNNNCTG 1 cut(s) 524
Ama87I CYCGRG 2 cut(s) 31, 294
Aor13HI TCCGGA 1 cut(s) 620
AoxI GGCC 2 cut(s) 162, 421
ApeKI GCWGC 5 cut(s) 45, 48, 245, 248, 401
AsiGI ACCGGT 1 cut(s) 92
AspS9I GGNCC 4 cut(s) 320, 428, 505, 724
AsuC2I CCSGG 6 cut(s) 32, 33, 295, 296, 503, 652
AsuHPI GGTGA 5 cut(s) 149, 293, 564, 592, 787
AvaI CYCGRG 2 cut(s) 31, 294
AvaII GGWCC 4 cut(s) 320, 428, 505, 724
BaeGI GKGCMC 1 cut(s) 32
BamHI GGATCC 1 cut(s) 382
BanI GGYRCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 151
BbvI GCAGC 5 cut(s) 32, 60, 235, 257, 388
BccI CCATC 6 cut(s) 191, 294, 311, 603, 699, 704
BceAI ACGGC 1 cut(s) 408
BcgI CGANNNNNNTGC 2 cut(s) 475, 509
BciT130I CCWGG 2 cut(s) 363, 604
BclI TGATCA 1 cut(s) 628
BcnI CCSGG 6 cut(s) 32, 33, 295, 296, 503, 652
BfaI CTAG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 46
BfrI CTTAAG 1 cut(s) 182
BglI GCCNNNNNGGC 1 cut(s) 111
BisI GCNGC 6 cut(s) 46, 49, 88, 246, 249, 402
BlsI GCNGC 6 cut(s) 47, 50, 89, 247, 250, 403
BmcAI AGTACT 1 cut(s) 825
Bme1390I CCNGG 8 cut(s) 32, 33, 295, 296, 363, 503, 604, 652
Bme18I GGWCC 4 cut(s) 320, 428, 505, 724
BmeT110I CYCGRG 2 cut(s) 31, 294
BmgT120I GGNCC 4 cut(s) 320, 428, 505, 724
BmiI GGNNCC 4 cut(s) 91, 322, 384, 614
BmrFI CCNGG 8 cut(s) 32, 33, 295, 296, 363, 503, 604, 652
BmsI GCATC 2 cut(s) 196, 223
BpmI CTGGAG 1 cut(s) 625
BpuEI CTTGAG 1 cut(s) 825
BpuMI CCSGG 6 cut(s) 32, 33, 295, 296, 503, 652
Bsa29I ATCGAT 1 cut(s) 854
BsaJI CCNNGG 6 cut(s) 31, 252, 294, 295, 378, 424
BsaWI WCCGGW 2 cut(s) 92, 620
Bsc4I CCNNNNNNNGG 5 cut(s) 215, 300, 301, 330, 609
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 283
Bse3DI GCAATG 1 cut(s) 240
BseAI TCCGGA 1 cut(s) 620
BseBI CCWGG 2 cut(s) 363, 604
BseCI ATCGAT 1 cut(s) 854
BseDI CCNNGG 6 cut(s) 31, 252, 294, 295, 378, 424
BseGI GGATG 5 cut(s) 305, 564, 710, 715, 835
BseLI CCNNNNNNNGG 5 cut(s) 215, 300, 301, 330, 609
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 2 cut(s) 581, 834
BseNI ACTGG 1 cut(s) 283
BseSI GKGCMC 1 cut(s) 32
BseXI GCAGC 5 cut(s) 32, 60, 235, 257, 388
BsgI GTGCAG 1 cut(s) 294
Bsh1285I CGRYCG 1 cut(s) 854
BshFI GGCC 2 cut(s) 164, 423
BshNI GGYRCC 1 cut(s) 89
BshTI ACCGGT 1 cut(s) 92
BshVI ATCGAT 1 cut(s) 854
BsiEI CGRYCG 1 cut(s) 854
BsiHKCI CYCGRG 2 cut(s) 31, 294
BsiSI CCGG 6 cut(s) 32, 93, 295, 503, 621, 651
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 5 cut(s) 215, 300, 301, 330, 609
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 2 cut(s) 164, 423
BsoBI CYCGRG 2 cut(s) 31, 294
Bsp1286I GDGCHC 2 cut(s) 32, 151
Bsp13I TCCGGA 1 cut(s) 620
Bsp143I GATC 5 cut(s) 365, 382, 628, 663, 851
BspACI CCGC 8 cut(s) 87, 114, 126, 132, 264, 638, 722, 727
BspANI GGCC 2 cut(s) 164, 423
BspCNI CTCAG 2 cut(s) 580, 833
BspDI ATCGAT 1 cut(s) 854
BspEI TCCGGA 1 cut(s) 620
BspLI GGNNCC 4 cut(s) 91, 322, 384, 614
BspMAI CTGCAG 1 cut(s) 50
BspPI GGATC 3 cut(s) 373, 377, 390
BspT107I GGYRCC 1 cut(s) 89
BspTI CTTAAG 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 240
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 6 cut(s) 31, 252, 294, 295, 378, 424
BssMI GATC 5 cut(s) 365, 382, 628, 663, 851
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 2 cut(s) 363, 604
Bst4CI ACNGT 4 cut(s) 374, 683, 751, 790
BstAFI CTTAAG 1 cut(s) 182
BstAPI GCANNNNNTGC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 2 cut(s) 567, 820
BstDSI CCRYGG 1 cut(s) 424
BstENI CCTNNNNNAGG 1 cut(s) 213
BstF5I GGATG 5 cut(s) 305, 564, 710, 715, 835
BstKTI GATC 5 cut(s) 368, 385, 631, 666, 854
BstMBI GATC 5 cut(s) 365, 382, 628, 663, 851
BstMCI CGRYCG 1 cut(s) 854
BstMWI GCNNNNNNNGC 8 cut(s) 57, 66, 96, 111, 242, 254, 263, 482
BstNI CCWGG 2 cut(s) 363, 604
BstSCI CCNGG 8 cut(s) 30, 31, 293, 294, 361, 501, 602, 650
BstSFI CTRYAG 1 cut(s) 46
BstSLI GKGCMC 1 cut(s) 32
BstV1I GCAGC 5 cut(s) 32, 60, 235, 257, 388
BstX2I RGATCY 2 cut(s) 365, 382
BstYI RGATCY 2 cut(s) 365, 382
Bsu15I ATCGAT 1 cut(s) 854
BsuRI GGCC 2 cut(s) 164, 423
BsuTUI ATCGAT 1 cut(s) 854
BtgI CCRYGG 1 cut(s) 424
BtsCI GGATG 5 cut(s) 305, 564, 710, 715, 835
BtsI GCAGTG 3 cut(s) 47, 285, 470
BtsIMutI CAGTG 3 cut(s) 47, 285, 470
Cac8I GCNNGC 1 cut(s) 13
CaiI CAGNNNCTG 1 cut(s) 524
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 4 cut(s) 320, 428, 505, 724
Cfr9I CCCGGG 2 cut(s) 31, 294
ClaI ATCGAT 1 cut(s) 854
CpoI CGGWCCG 1 cut(s) 724
Csp6I GTAC 3 cut(s) 660, 747, 824
CspAI ACCGGT 1 cut(s) 92
CspI CGGWCCG 1 cut(s) 724
CviAII CATG 4 cut(s) 330, 396, 585, 590
CviQI GTAC 3 cut(s) 660, 747, 824
DdeI CTNAG 2 cut(s) 567, 820
DpnI GATC 5 cut(s) 367, 384, 630, 665, 853
DpnII GATC 5 cut(s) 365, 382, 628, 663, 851
DrdI GACNNNNNNGTC 1 cut(s) 568
DseDI GACNNNNNNGTC 1 cut(s) 568
EaeI YGGCCR 1 cut(s) 421
EciI GGCGGA 1 cut(s) 737
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 151
Eco47I GGWCC 4 cut(s) 320, 428, 505, 724
Eco88I CYCGRG 2 cut(s) 31, 294
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoRII CCWGG 2 cut(s) 361, 602
EcoT14I CCWWGG 1 cut(s) 252
EcoT22I ATGCAT 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 4 cut(s) 333, 399, 588, 593
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 1 cut(s) 319
FatI CATG 4 cut(s) 329, 395, 584, 589
FauI CCCGC 3 cut(s) 119, 271, 631
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 6 cut(s) 46, 49, 88, 246, 249, 402
FokI GGATG 5 cut(s) 312, 571, 717, 722, 822
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 6 cut(s) 46, 49, 88, 246, 249, 402
FspBI CTAG 1 cut(s) 152
GluI GCNGC 6 cut(s) 46, 49, 88, 246, 249, 402
GsuI CTGGAG 1 cut(s) 625
HaeIII GGCC 2 cut(s) 164, 423
HapII CCGG 6 cut(s) 32, 93, 295, 503, 621, 651
Hin1II CATG 4 cut(s) 333, 399, 588, 593
HinfI GANTC 3 cut(s) 687, 818, 847
HpaII CCGG 6 cut(s) 32, 93, 295, 503, 621, 651
HphI GGTGA 5 cut(s) 149, 293, 564, 592, 787
Hpy166II GTNNAC 1 cut(s) 686
Hpy188I TCNGA 4 cut(s) 177, 192, 382, 800
Hpy188III TCNNGA 6 cut(s) 538, 556, 621, 741, 815, 842
Hpy8I GTNNAC 1 cut(s) 686
HpyAV CCTTC 2 cut(s) 544, 627
HpyCH4III ACNGT 4 cut(s) 374, 683, 751, 790
HpyCH4V TGCA 5 cut(s) 48, 245, 311, 329, 496
HpyF10VI GCNNNNNNNGC 8 cut(s) 57, 66, 96, 111, 242, 254, 263, 482
HpyF3I CTNAG 2 cut(s) 567, 820
Hsp92II CATG 4 cut(s) 333, 399, 588, 593
Kpn2I TCCGGA 1 cut(s) 620
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 5 cut(s) 365, 382, 628, 663, 851
LmnI GCTCC 2 cut(s) 482, 623
Lsp1109I GCAGC 5 cut(s) 32, 60, 235, 257, 388
LweI GCATC 2 cut(s) 196, 223
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 4 cut(s) 137, 281, 570, 775
MalI GATC 5 cut(s) 367, 384, 630, 665, 853
MboI GATC 5 cut(s) 365, 382, 628, 663, 851
MflI RGATCY 2 cut(s) 365, 382
MhlI GDGCHC 2 cut(s) 32, 151
MluCI AATT 1 cut(s) 388
MlyI GAGTC 3 cut(s) 681, 812, 856
MnlI CCTC 6 cut(s) 29, 388, 576, 592, 737, 849
Mph1103I ATGCAT 1 cut(s) 331
MroI TCCGGA 1 cut(s) 620
MseI TTAA 3 cut(s) 171, 183, 345
MspA1I CMGCKG 2 cut(s) 248, 638
MspCI CTTAAG 1 cut(s) 182
MspI CCGG 6 cut(s) 32, 93, 295, 503, 621, 651
MspR9I CCNGG 8 cut(s) 32, 33, 295, 296, 363, 503, 604, 652
MvaI CCWGG 2 cut(s) 363, 604
MwoI GCNNNNNNNGC 8 cut(s) 57, 66, 96, 111, 242, 254, 263, 482
NciI CCSGG 6 cut(s) 32, 33, 295, 296, 503, 652
NdeII GATC 5 cut(s) 365, 382, 628, 663, 851
NlaIII CATG 4 cut(s) 333, 399, 588, 593
NlaIV GGNNCC 4 cut(s) 91, 322, 384, 614
NmuCI GTSAC 4 cut(s) 137, 281, 570, 775
NsiI ATGCAT 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 687
PflFI GACNNNGTC 1 cut(s) 524
PfoI TCCNGGA 1 cut(s) 361
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 6 cut(s) 47, 50, 89, 247, 250, 403
Ple19I CGATCG 1 cut(s) 854
PleI GAGTC 3 cut(s) 681, 812, 855
PpsI GAGTC 3 cut(s) 681, 812, 855
PsiI TTATAA 1 cut(s) 794
Psp6I CCWGG 2 cut(s) 361, 602
PspGI CCWGG 2 cut(s) 361, 602
PspN4I GGNNCC 4 cut(s) 91, 322, 384, 614
PspPI GGNCC 4 cut(s) 320, 428, 505, 724
PsrI GAACNNNNNNTAC 2 cut(s) 440, 472
PstI CTGCAG 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 524
PsuI RGATCY 2 cut(s) 365, 382
PsyI GACNNNGTC 1 cut(s) 524
PvuI CGATCG 1 cut(s) 854
PvuII CAGCTG 1 cut(s) 248
RsaI GTAC 3 cut(s) 661, 748, 825
RsaNI GTAC 3 cut(s) 660, 747, 824
Rsr2I CGGWCCG 1 cut(s) 724
RsrII CGGWCCG 1 cut(s) 724
SaqAI TTAA 3 cut(s) 171, 183, 345
SatI GCNGC 6 cut(s) 46, 49, 88, 246, 249, 402
Sau3AI GATC 5 cut(s) 365, 382, 628, 663, 851
Sau96I GGNCC 4 cut(s) 320, 428, 505, 724
ScaI AGTACT 1 cut(s) 825
SchI GAGTC 3 cut(s) 681, 812, 856
ScrFI CCNGG 8 cut(s) 32, 33, 295, 296, 363, 503, 604, 652
SduI GDGCHC 2 cut(s) 32, 151
SfaNI GCATC 2 cut(s) 196, 223
SfcI CTRYAG 1 cut(s) 46
SinI GGWCC 4 cut(s) 320, 428, 505, 724
SmaI CCCGGG 2 cut(s) 33, 296
SmlI CTYRAG 2 cut(s) 182, 840
SmoI CTYRAG 2 cut(s) 182, 840
Sse9I AATT 1 cut(s) 388
SsiI CCGC 8 cut(s) 87, 114, 126, 132, 264, 638, 722, 727
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 8 cut(s) 30, 31, 293, 294, 361, 501, 602, 650
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 4 cut(s) 374, 683, 751, 790
TaqI TCGA 3 cut(s) 690, 850, 854
TasI AATT 1 cut(s) 388
TatI WGTACW 1 cut(s) 823
TauI GCSGC 1 cut(s) 90
Tru1I TTAA 3 cut(s) 171, 183, 345
Tru9I TTAA 3 cut(s) 171, 183, 345
TscAI CASTG 3 cut(s) 47, 292, 470
TseFI GTSAC 4 cut(s) 137, 281, 570, 775
TseI GCWGC 5 cut(s) 45, 48, 245, 248, 401
Tsp45I GTSAC 4 cut(s) 137, 281, 570, 775
TspDTI ATGAA 2 cut(s) 229, 824
TspMI CCCGGG 2 cut(s) 31, 294
TspRI CASTG 3 cut(s) 47, 292, 470
Tth111I GACNNNGTC 1 cut(s) 524
Vha464I CTTAAG 1 cut(s) 182
VpaK11BI GGWCC 4 cut(s) 320, 428, 505, 724
XagI CCTNNNNNAGG 1 cut(s) 213
XcmI CCANNNNNNNNNTGG 2 cut(s) 107, 113
XmaI CCCGGG 2 cut(s) 31, 294
XspI CTAG 1 cut(s) 152
ZrmI AGTACT 1 cut(s) 825
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.