Rh6BG241200

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000495
Physical Location & Seq
Reverse (-)
44880122 .. 44882669
2548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG241200.1

Sequence Viewer

Length: 303 bp
ATGGCCGCGGGTCTAGTATCACAGAACACCTTTGATCAGATACTTAAGCATCGAAACGAGGGTGGTTGCCCTACCAAATGGTTTTATACTTATGATGCTTTTATTGCAGCTGCCAAGGCTTTCCCCGGCTTTGCTACTACTGGTGACACTGCCACCCGTAAAAGGGAGATTGCTGCTTTCTTAGCCCAAACTTCTCATGAAACTACTGCTCCGACACTTGGTGCTGATCTTGGAAGAAGGACCAAAGCAACTAGATCTTGCGTTCTTGGAATCGAAAGAGGAGGAGAGAAGACTTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

100

Amino Acids

10.8

Weight (kDa)

9.1

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 5 - 73 3.1e-30 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 8
AciI CCGC 2 cut(s) 6, 8
AcoI YGGCCR 1 cut(s) 3
AdeI CACNNNGTG 1 cut(s) 221
AfiI CCNNNNNNNGG 3 cut(s) 162, 163, 218
AflII CTTAAG 1 cut(s) 44
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 107, 110, 173
AspS9I GGNCC 1 cut(s) 240
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 296
BbvI GCAGC 3 cut(s) 97, 119, 160
BclI TGATCA 1 cut(s) 34
BcnI CCSGG 1 cut(s) 126
BfaI CTAG 2 cut(s) 14, 252
BfrI CTTAAG 1 cut(s) 44
BglII AGATCT 1 cut(s) 254
BisI GCNGC 4 cut(s) 6, 108, 111, 174
BlsI GCNGC 4 cut(s) 7, 109, 112, 175
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 2 cut(s) 58, 85
BpiI GAAGAC 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 126
BsaJI CCNNGG 3 cut(s) 6, 114, 124
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 163, 218
Bse1I ACTGG 1 cut(s) 145
BseDI CCNNGG 3 cut(s) 6, 114, 124
BseLI CCNNNNNNNGG 3 cut(s) 162, 163, 218
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 2 cut(s) 294, 297
BseXI GCAGC 3 cut(s) 97, 119, 160
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 126
BslI CCNNNNNNNGG 3 cut(s) 162, 163, 218
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 3 cut(s) 34, 226, 254
BspACI CCGC 2 cut(s) 6, 8
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 8
BspHI TCATGA 1 cut(s) 196
BspTI CTTAAG 1 cut(s) 44
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 3 cut(s) 6, 114, 124
BssMI GATC 3 cut(s) 34, 226, 254
BssT1I CCWWGG 1 cut(s) 114
BstAFI CTTAAG 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 6
BstFNI CGCG 1 cut(s) 8
BstKTI GATC 3 cut(s) 37, 229, 257
BstMBI GATC 3 cut(s) 34, 226, 254
BstMWI GCNNNNNNNGC 3 cut(s) 104, 116, 182
BstSCI CCNGG 1 cut(s) 124
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 3 cut(s) 97, 119, 160
BstV2I GAAGAC 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 6
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
CciI TCATGA 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 240
Cfr42I CCGCGG 1 cut(s) 9
CviAII CATG 1 cut(s) 197
CviJI RGCY 5 cut(s) 5, 110, 119, 129, 185
CviKI_1 RGCY 5 cut(s) 5, 110, 119, 129, 185
DdeI CTNAG 1 cut(s) 181
DpnI GATC 3 cut(s) 36, 228, 256
DpnII GATC 3 cut(s) 34, 226, 254
DraIII CACNNNGTG 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 200
FaiI YATR 3 cut(s) 87, 93, 198
FatI CATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 4 cut(s) 6, 108, 111, 174
Fsp4HI GCNGC 4 cut(s) 6, 108, 111, 174
FspBI CTAG 2 cut(s) 14, 252
GluI GCNGC 4 cut(s) 6, 108, 111, 174
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 126
Hin1II CATG 1 cut(s) 200
HinfI GANTC 1 cut(s) 270
HpaII CCGG 1 cut(s) 126
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 2 cut(s) 39, 213
Hpy188III TCNNGA 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 116, 182
HpyF3I CTNAG 1 cut(s) 181
Hsp92II CATG 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 34
KspI CCGCGG 1 cut(s) 9
Kzo9I GATC 3 cut(s) 34, 226, 254
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 2 cut(s) 126, 139
Lsp1109I GCAGC 3 cut(s) 97, 119, 160
LweI GCATC 2 cut(s) 58, 85
MaeI CTAG 2 cut(s) 14, 252
MaeIII GTNAC 1 cut(s) 143
MalI GATC 3 cut(s) 36, 228, 256
MboI GATC 3 cut(s) 34, 226, 254
MboII GAAGA 2 cut(s) 246, 301
MflI RGATCY 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 3 cut(s) 52, 272, 275
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 2 cut(s) 8, 110
MspCI CTTAAG 1 cut(s) 44
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 126
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 3 cut(s) 104, 116, 182
NciI CCSGG 1 cut(s) 126
NdeII GATC 3 cut(s) 34, 226, 254
NlaIII CATG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 143
PagI TCATGA 1 cut(s) 196
PfeI GAWTC 1 cut(s) 270
PkrI GCNGC 4 cut(s) 7, 109, 112, 175
PspPI GGNCC 1 cut(s) 240
PsuI RGATCY 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 110
SacII CCGCGG 1 cut(s) 9
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 4 cut(s) 6, 108, 111, 174
Sau3AI GATC 3 cut(s) 34, 226, 254
Sau96I GGNCC 1 cut(s) 240
ScrFI CCNGG 1 cut(s) 126
SetI ASST 2 cut(s) 32, 112
SfaNI GCATC 2 cut(s) 58, 85
Sfr303I CCGCGG 1 cut(s) 9
SgrBI CCGCGG 1 cut(s) 9
SinI GGWCC 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SsiI CCGC 2 cut(s) 6, 8
SspMI CTAG 2 cut(s) 14, 252
StyD4I CCNGG 1 cut(s) 124
StyI CCWWGG 1 cut(s) 114
TaqI TCGA 2 cut(s) 52, 273
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 270
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 3 cut(s) 107, 110, 173
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 1 cut(s) 154
Vha464I CTTAAG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 240
XspI CTAG 2 cut(s) 14, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.