Rorug02G0068300

Endochitinase-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
5331750 .. 5332778
1029 bp
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UTR
Exon/CDS
Intron
Rorug02G0068300.1

Sequence Viewer

Length: 780 bp
ATGGCTGCTACCTTCCGTAAACACCTATTGGCAGAGTGGTCTAGTCTTCCTCAAGTCATTCTCTCAGAGATTCTGGATAAGTTGTTGGAACCAACTGACCATGTTCGTTTTGCTGCCGTTTGCAAGGAATGGCATGCTCTCGCAACACACTACAACCACACAACCCAGCGTTGTTTTAAGTTACCACAAGCTTGTAATAGCACTAAGAGGTGTTGTGGCTCGAGTAATGCCCCTGGTTGGTTGGTCACAGTAGATCTCCTAGGCGAACATCAACTCAGTACAACTCTTGTGAACGTGTTCAAAAGAGAAGTGACGCCCATTCGTCTCCCTCCATTGGTTTTCAATGCCCAGAGTTGTTGGTTCAGGGTTTTCTCCCCAAAGGTTATCTTATCCGCTGATCCGATTGCAAATCCAGACAATTATGTGGTTGTGGCAGTTTATGATAGAGTTTCAAGGTTCGCTTTCATAAAAGGAGGACAAACAATCTGGACTTACCTTGAGGGGTATCTTGTGGAAACAACCAAAGGAGACTTGTTGCATGTTCGAAGATTTTTGAAACAGAAGGATGTACCACGAGATCACTATTTCCATTATGAGGATAATGAGTTCTGGACCGAGAGCTTCAAGGTTTACAAGGTGGTGTTTGATGAGAGGGACGAATCCATTGTGGAGCATGTTGAGTTAAAGAGTATTGGAGATGAGGCTTTGTTTGTCGGTGACAATCATTCGATGTGTGTTTTGGCTTCAAACTTTCCTGGGTGTCAACCAAATTCTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

259

Amino Acids

29.68

Weight (kDa)

6.41

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 13 - 49 3.4e-08 F-box-like
Beta-prop_KIB1-4 PF03478 58 - 167 2.6e-15 KIB1-4 beta-propeller
Beta-prop_KIB1-4 PF03478 168 - 259 5.3e-16 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 393
AclWI GGATC 1 cut(s) 392
AcsI RAATTY 1 cut(s) 769
AcyI GRCGYC 1 cut(s) 314
AfaI GTAC 2 cut(s) 280, 570
AfiI CCNNNNNNNGG 3 cut(s) 237, 334, 595
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 6 cut(s) 301, 343, 453, 556, 625, 747
AjnI CCWGG 2 cut(s) 232, 754
AloI GAACNNNNNNTCC 2 cut(s) 590, 622
AluBI AGCT 2 cut(s) 191, 621
AluI AGCT 2 cut(s) 191, 621
Alw26I GTCTC 2 cut(s) 329, 522
AlwI GGATC 1 cut(s) 392
Ama87I CYCGRG 1 cut(s) 220
ApeKI GCWGC 2 cut(s) 5, 113
ApoI RAATTY 1 cut(s) 769
Asp700I GAANNNNTTC 1 cut(s) 296
AspA2I CCTAGG 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 612
AsuHPI GGTGA 1 cut(s) 728
AsuII TTCGAA 1 cut(s) 544
AvaI CYCGRG 1 cut(s) 220
AvaII GGWCC 1 cut(s) 612
AvrII CCTAGG 1 cut(s) 259
BauI CACGAG 1 cut(s) 573
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 2 cut(s) 234, 756
BcoDI GTCTC 2 cut(s) 329, 522
BfaI CTAG 2 cut(s) 42, 260
BglII AGATCT 1 cut(s) 253
BisI GCNGC 2 cut(s) 6, 114
BlnI CCTAGG 1 cut(s) 259
BlsI GCNGC 2 cut(s) 7, 115
Bme1390I CCNGG 2 cut(s) 234, 756
Bme18I GGWCC 1 cut(s) 612
BmeT110I CYCGRG 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 612
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 2 cut(s) 234, 756
BpiI GAAGAC 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 544
BpuEI CTTGAG 2 cut(s) 36, 518
BsaHI GRCGYC 1 cut(s) 314
BsaJI CCNNGG 3 cut(s) 232, 259, 755
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 334, 595
BseBI CCWGG 2 cut(s) 234, 756
BseDI CCNNGG 3 cut(s) 232, 259, 755
BseGI GGATG 1 cut(s) 571
BseLI CCNNNNNNNGG 3 cut(s) 237, 334, 595
BseMII CTCAG 2 cut(s) 78, 289
BseXI GCAGC 1 cut(s) 100
BseYI CCCAGC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 220
BslFI GGGAC 1 cut(s) 668
BslI CCNNNNNNNGG 3 cut(s) 237, 334, 595
BsmAI GTCTC 2 cut(s) 329, 522
BsmBI CGTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 668
BsoBI CYCGRG 1 cut(s) 220
Bsp119I TTCGAA 1 cut(s) 544
Bsp143I GATC 3 cut(s) 253, 397, 577
BspACI CCGC 1 cut(s) 393
BspCNI CTCAG 2 cut(s) 77, 288
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 392
BspT104I TTCGAA 1 cut(s) 544
BssECI CCNNGG 3 cut(s) 232, 259, 755
BssMI GATC 3 cut(s) 253, 397, 577
BssNI GRCGYC 1 cut(s) 314
BssSI CACGAG 1 cut(s) 573
BssT1I CCWWGG 1 cut(s) 259
Bst2BI CACGAG 1 cut(s) 573
Bst2UI CCWGG 2 cut(s) 234, 756
Bst4CI ACNGT 1 cut(s) 250
BstACI GRCGYC 1 cut(s) 314
BstBI TTCGAA 1 cut(s) 544
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 64, 204, 275
BstF5I GGATG 1 cut(s) 571
BstKTI GATC 3 cut(s) 256, 400, 580
BstMAI GTCTC 2 cut(s) 329, 522
BstMBI GATC 3 cut(s) 253, 397, 577
BstNI CCWGG 2 cut(s) 234, 756
BstNSI RCATGY 3 cut(s) 137, 542, 677
BstSCI CCNGG 2 cut(s) 232, 754
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BtsCI GGATG 1 cut(s) 571
Cac8I GCNNGC 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 612
CseI GACGC 1 cut(s) 322
Csp6I GTAC 2 cut(s) 279, 569
CviAII CATG 4 cut(s) 101, 134, 539, 674
CviJI RGCY 6 cut(s) 5, 191, 219, 621, 704, 743
CviKI_1 RGCY 6 cut(s) 5, 191, 219, 621, 704, 743
CviQI GTAC 2 cut(s) 279, 569
DdeI CTNAG 3 cut(s) 64, 204, 275
DpnI GATC 3 cut(s) 255, 399, 579
DpnII GATC 3 cut(s) 253, 397, 577
Eco130I CCWWGG 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 220
EcoRII CCWGG 2 cut(s) 232, 754
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 329
FaeI CATG 4 cut(s) 104, 137, 542, 677
FalI AAGNNNNNCTT 4 cut(s) 371, 403, 445, 477
FaqI GGGAC 1 cut(s) 668
FatI CATG 4 cut(s) 100, 133, 538, 673
Fnu4HI GCNGC 2 cut(s) 6, 114
FokI GGATG 1 cut(s) 578
Fsp4HI GCNGC 2 cut(s) 6, 114
FspBI CTAG 2 cut(s) 42, 260
GluI GCNGC 2 cut(s) 6, 114
GsaI CCCAGC 1 cut(s) 169
HgaI GACGC 1 cut(s) 322
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 4 cut(s) 104, 137, 542, 677
HincII GTYRAC 1 cut(s) 764
HindII GTYRAC 1 cut(s) 764
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 2 cut(s) 70, 659
HphI GGTGA 1 cut(s) 728
Hpy166II GTNNAC 4 cut(s) 20, 292, 631, 764
Hpy188I TCNGA 2 cut(s) 67, 402
Hpy188III TCNNGA 4 cut(s) 74, 413, 487, 610
Hpy8I GTNNAC 4 cut(s) 20, 292, 631, 764
HpyAV CCTTC 2 cut(s) 22, 556
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 3 cut(s) 123, 407, 538
HpyF3I CTNAG 3 cut(s) 64, 204, 275
HpySE526I ACGT 1 cut(s) 294
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 4 cut(s) 104, 137, 542, 677
Kzo9I GATC 3 cut(s) 253, 397, 577
LmnI GCTCC 1 cut(s) 670
Lsp1109I GCAGC 1 cut(s) 100
MaeI CTAG 2 cut(s) 42, 260
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 4 cut(s) 180, 244, 310, 716
MalI GATC 3 cut(s) 255, 399, 579
MboI GATC 3 cut(s) 253, 397, 577
MboII GAAGA 2 cut(s) 38, 558
MflI RGATCY 1 cut(s) 253
MluCI AATT 2 cut(s) 418, 769
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 8 cut(s) 60, 201, 339, 467, 493, 589, 645, 694
MroXI GAANNNNTTC 1 cut(s) 296
MseI TTAA 2 cut(s) 177, 683
MspA1I CMGCKG 1 cut(s) 395
MspR9I CCNGG 2 cut(s) 234, 756
MvaI CCWGG 2 cut(s) 234, 756
NdeII GATC 3 cut(s) 253, 397, 577
NlaIII CATG 4 cut(s) 104, 137, 542, 677
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 3 cut(s) 244, 310, 716
NspI RCATGY 3 cut(s) 137, 542, 677
NspV TTCGAA 1 cut(s) 544
PaeI GCATGC 1 cut(s) 137
PaeR7I CTCGAG 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 296
PfeI GAWTC 2 cut(s) 70, 659
PkrI GCNGC 2 cut(s) 7, 115
Psp6I CCWGG 2 cut(s) 232, 754
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 2 cut(s) 232, 754
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 612
PspXI VCTCGAGB 1 cut(s) 220
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 2 cut(s) 280, 570
RsaNI GTAC 2 cut(s) 279, 569
SaqAI TTAA 2 cut(s) 177, 683
SatI GCNGC 2 cut(s) 6, 114
Sau3AI GATC 3 cut(s) 253, 397, 577
Sau96I GGNCC 1 cut(s) 612
ScrFI CCNGG 2 cut(s) 234, 756
Sfr274I CTCGAG 1 cut(s) 220
SfuI TTCGAA 1 cut(s) 544
SinI GGWCC 1 cut(s) 612
SlaI CTCGAG 1 cut(s) 220
SmlI CTYRAG 3 cut(s) 51, 220, 497
SmoI CTYRAG 3 cut(s) 51, 220, 497
SphI GCATGC 1 cut(s) 137
Sse9I AATT 2 cut(s) 418, 769
SsiI CCGC 1 cut(s) 393
SspMI CTAG 2 cut(s) 42, 260
StyD4I CCNGG 2 cut(s) 232, 754
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 297
TaqI TCGA 3 cut(s) 221, 544, 728
TaqII GACCGA 1 cut(s) 629
TasI AATT 2 cut(s) 418, 769
TatI WGTACW 1 cut(s) 278
TfiI GAWTC 2 cut(s) 70, 659
Tru1I TTAA 2 cut(s) 177, 683
Tru9I TTAA 2 cut(s) 177, 683
TseFI GTSAC 3 cut(s) 244, 310, 716
TseI GCWGC 2 cut(s) 5, 113
Tsp45I GTSAC 3 cut(s) 244, 310, 716
TspDTI ATGAA 1 cut(s) 454
TspGWI ACGGA 1 cut(s) 5
VpaK11BI GGWCC 1 cut(s) 612
XapI RAATTY 1 cut(s) 769
XceI RCATGY 3 cut(s) 137, 542, 677
XhoI CTCGAG 1 cut(s) 220
XmaJI CCTAGG 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 296
XspI CTAG 2 cut(s) 42, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.