RchiOBHm_Chr6g0279831

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000495
Physical Location & Seq
Reverse (-)
43034378 .. 43034647
270 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25094

Sequence Viewer

Length: 270 bp
ATGGCTGGTGTGGCACTACACCTGATTATTGCGGCAACGGTTGCCAAAGCCAATGCGGCCGCGGGTCTAGTATCACAGAACACCTTTGATCAGATACTTAAGCATCGAAACGATGGTGGTTGCCCTGCCAAATGGTTTTATACTTACGATGCTTTTATTGCAGCTGCCAAGGCTTTCCCCGGCTTTGCTACTACTGGTGACACTGCCACCCGTAAAAGGGAGATTGCTGCTTTCTTAGCCCAAACTTCTCATGAAACTACTGGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

89

Amino Acids

9.36

Weight (kDa)

8.93

Isoelectric Point (pI)

32.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 23 - 88 2.6e-31 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 62
AciI CCGC 4 cut(s) 32, 56, 60, 62
AcoI YGGCCR 1 cut(s) 57
AfiI CCNNNNNNNGG 2 cut(s) 216, 217
AflII CTTAAG 1 cut(s) 98
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 161, 164, 227
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 209
BbvI GCAGC 3 cut(s) 151, 173, 214
BccI CCATC 1 cut(s) 107
BclI TGATCA 1 cut(s) 88
BcnI CCSGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 98
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 6 cut(s) 33, 57, 60, 162, 165, 228
BlsI GCNGC 6 cut(s) 34, 58, 61, 163, 166, 229
Bme1390I CCNGG 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 2 cut(s) 112, 139
BpuMI CCSGG 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 60, 168, 178
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 217
Bse1I ACTGG 2 cut(s) 199, 265
BseDI CCNNGG 3 cut(s) 60, 168, 178
BseLI CCNNNNNNNGG 2 cut(s) 216, 217
BseNI ACTGG 2 cut(s) 199, 265
BseX3I CGGCCG 1 cut(s) 57
BseXI GCAGC 3 cut(s) 151, 173, 214
Bsh1236I CGCG 1 cut(s) 62
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 2 cut(s) 216, 217
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 4 cut(s) 32, 56, 60, 62
BspANI GGCC 1 cut(s) 59
BspFNI CGCG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 250
BspTI CTTAAG 1 cut(s) 98
BsrI ACTGG 2 cut(s) 199, 265
BssECI CCNNGG 3 cut(s) 60, 168, 178
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 40
BstAFI CTTAAG 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 235
BstDSI CCRYGG 1 cut(s) 60
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 6 cut(s) 11, 41, 56, 158, 170, 236
BstSCI CCNGG 1 cut(s) 178
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 3 cut(s) 151, 173, 214
BstZI CGGCCG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
CciI TCATGA 1 cut(s) 250
CciNI GCGGCCGC 1 cut(s) 57
Cfr42I CCGCGG 1 cut(s) 63
CviAII CATG 1 cut(s) 251
CviJI RGCY 7 cut(s) 5, 50, 59, 164, 173, 183, 239
CviKI_1 RGCY 7 cut(s) 5, 50, 59, 164, 173, 183, 239
DdeI CTNAG 1 cut(s) 235
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 57
EagI CGGCCG 1 cut(s) 57
EclXI CGGCCG 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 168
Eco52I CGGCCG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 1 cut(s) 254
FaiI YATR 2 cut(s) 141, 252
FatI CATG 1 cut(s) 250
FauI CCCGC 1 cut(s) 55
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 6 cut(s) 33, 57, 60, 162, 165, 228
Fsp4HI GCNGC 6 cut(s) 33, 57, 60, 162, 165, 228
FspBI CTAG 1 cut(s) 68
GluI GCNGC 6 cut(s) 33, 57, 60, 162, 165, 228
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 180
Hin1II CATG 1 cut(s) 254
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 251
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 41, 56, 158, 170, 236
HpyF3I CTNAG 1 cut(s) 235
Hsp92II CATG 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 88
KspI CCGCGG 1 cut(s) 63
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 5 cut(s) 35, 138, 180, 193, 246
Lsp1109I GCAGC 3 cut(s) 151, 173, 214
LweI GCATC 2 cut(s) 112, 139
MaeI CTAG 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MluCI AATT 1 cut(s) 265
MseI TTAA 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 62, 164
MspCI CTTAAG 1 cut(s) 98
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 6 cut(s) 11, 41, 56, 158, 170, 236
NciI CCSGG 1 cut(s) 180
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 197
NotI GCGGCCGC 1 cut(s) 57
PagI TCATGA 1 cut(s) 250
PkrI GCNGC 6 cut(s) 34, 58, 61, 163, 166, 229
PvuII CAGCTG 1 cut(s) 164
SacII CCGCGG 1 cut(s) 63
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 6 cut(s) 33, 57, 60, 162, 165, 228
Sau3AI GATC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 180
SetI ASST 3 cut(s) 24, 86, 166
SfaNI GCATC 2 cut(s) 112, 139
Sfr303I CCGCGG 1 cut(s) 63
SgrBI CCGCGG 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 1 cut(s) 265
SsiI CCGC 4 cut(s) 32, 56, 60, 62
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 178
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 106
TasI AATT 1 cut(s) 265
TauI GCSGC 3 cut(s) 35, 59, 62
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 3 cut(s) 161, 164, 227
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 1 cut(s) 208
Vha464I CTTAAG 1 cut(s) 98
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.