Rh2BG117800

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000495
Physical Location & Seq
Forward (+)
10021392 .. 10021850
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG117800.1

Sequence Viewer

Length: 321 bp
ATGCTCAGGTACCAAAATGATGGTCGGTGCCCAAGTAATGGGTTTTATAAGTATGATGCCTTCATTGCTGCTGCCCGATCCTTTAATGGGTTTGGCCCAACTGGAGATGTTGCTACACGCAAGAAGGAACTTGCTGCTTTCGTGGGTCAAACGTCACATGAGACAACCGGAGGATGGCCAAGTGCACCAGATGGTCCTTATGCTTGGGGATATTGCTTTATCAGGGGACTCAACCAGGCTGAGTATTGCACTCCATCAGCCCAATATCCATGCGCTTCTGGCAAAAAGGATTACGGTCGAGGACCTACTCAACTTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

106

Amino Acids

11.53

Weight (kDa)

8.72

Isoelectric Point (pI)

24.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 1 - 106 2.6e-47 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 48
Acc65I GGTACC 1 cut(s) 9
AccB1I GGYRCC 2 cut(s) 9, 27
AccB7I CCANNNNNTGG 1 cut(s) 38
AclWI GGATC 1 cut(s) 72
AcoI YGGCCR 1 cut(s) 176
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 3 cut(s) 38, 87, 174
AjnI CCWGG 1 cut(s) 234
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 155
Alw44I GTGCAC 1 cut(s) 183
AlwI GGATC 1 cut(s) 72
AoxI GGCC 2 cut(s) 94, 176
ApaLI GTGCAC 1 cut(s) 183
ApeKI GCWGC 3 cut(s) 68, 71, 134
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
Asp718I GGTACC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 3 cut(s) 95, 194, 302
AvaII GGWCC 2 cut(s) 194, 302
BaeGI GKGCMC 2 cut(s) 32, 187
BalI TGGCCA 1 cut(s) 178
BanI GGYRCC 2 cut(s) 9, 27
BarI GAAGNNNNNNTAC 2 cut(s) 44, 76
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 3 cut(s) 55, 58, 121
BccI CCATC 4 cut(s) 14, 168, 185, 262
BciT130I CCWGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 155
BisI GCNGC 3 cut(s) 69, 72, 135
BlsI GCNGC 3 cut(s) 70, 73, 136
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 2 cut(s) 194, 302
BmgT120I GGNCC 3 cut(s) 95, 194, 302
BmiI GGNNCC 2 cut(s) 11, 29
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 123
Bpu10I CCTNAGC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 167
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 87, 174
Bse1I ACTGG 1 cut(s) 106
Bse3DI GCAATG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 236
BseGI GGATG 1 cut(s) 179
BseLI CCNNNNNNNGG 3 cut(s) 38, 87, 174
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 2 cut(s) 19, 231
BseNI ACTGG 1 cut(s) 106
BseSI GKGCMC 2 cut(s) 32, 187
BseXI GCAGC 3 cut(s) 55, 58, 121
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 2 cut(s) 96, 178
BshNI GGYRCC 2 cut(s) 9, 27
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 3 cut(s) 38, 87, 174
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 2 cut(s) 96, 178
Bsp1286I GDGCHC 2 cut(s) 32, 187
Bsp143I GATC 1 cut(s) 77
BspANI GGCC 2 cut(s) 96, 178
BspCNI CTCAG 2 cut(s) 18, 232
BspLI GGNNCC 2 cut(s) 11, 29
BspPI GGATC 1 cut(s) 72
BspT107I GGYRCC 2 cut(s) 9, 27
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 1 cut(s) 106
BssMI GATC 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 5, 240, 318
BstF5I GGATG 1 cut(s) 179
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 77
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 2 cut(s) 65, 279
BstNI CCWGG 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 234
BstSLI GKGCMC 2 cut(s) 32, 187
BstV1I GCAGC 3 cut(s) 55, 58, 121
BstXI CCANNNNNNTGG 1 cut(s) 20
BsuRI GGCC 2 cut(s) 96, 178
BtsCI GGATG 1 cut(s) 179
CfoI GCGC 1 cut(s) 275
Cfr13I GGNCC 3 cut(s) 95, 194, 302
Csp6I GTAC 1 cut(s) 10
CviAII CATG 2 cut(s) 158, 270
CviJI RGCY 4 cut(s) 96, 178, 239, 260
CviKI_1 RGCY 4 cut(s) 96, 178, 239, 260
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 3 cut(s) 5, 240, 318
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
EaeI YGGCCR 1 cut(s) 176
Eco47I GGWCC 2 cut(s) 194, 302
EcoO109I RGGNCCY 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 234
FaeI CATG 2 cut(s) 161, 273
FaiI YATR 5 cut(s) 48, 54, 159, 201, 271
FaqI GGGAC 1 cut(s) 240
FatI CATG 2 cut(s) 157, 269
Fnu4HI GCNGC 3 cut(s) 69, 72, 135
FokI GGATG 1 cut(s) 186
Fsp4HI GCNGC 3 cut(s) 69, 72, 135
GlaI GCGC 1 cut(s) 274
GluI GCNGC 3 cut(s) 69, 72, 135
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 2 cut(s) 96, 178
HapII CCGG 1 cut(s) 168
HhaI GCGC 1 cut(s) 275
Hin1II CATG 2 cut(s) 161, 273
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HinfI GANTC 1 cut(s) 228
HpaII CCGG 1 cut(s) 168
Hpy166II GTNNAC 1 cut(s) 185
Hpy8I GTNNAC 1 cut(s) 185
HpyAV CCTTC 2 cut(s) 70, 118
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 185, 249
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 279
HpyF3I CTNAG 3 cut(s) 5, 240, 318
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 2 cut(s) 161, 273
HspAI GCGC 1 cut(s) 273
KpnI GGTACC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 77
LpnPI CCDG 7 cut(s) 87, 181, 201, 208, 221, 248, 264
Lsp1109I GCAGC 3 cut(s) 55, 58, 121
LweI GCATC 1 cut(s) 46
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 153
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MhlI GDGCHC 2 cut(s) 32, 187
MlsI TGGCCA 1 cut(s) 178
MluNI TGGCCA 1 cut(s) 178
MlyI GAGTC 1 cut(s) 222
MnlI CCTC 2 cut(s) 164, 293
Mox20I TGGCCA 1 cut(s) 178
MscI TGGCCA 1 cut(s) 178
MseI TTAA 1 cut(s) 84
Msp20I TGGCCA 1 cut(s) 178
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 236
MvaI CCWGG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 65, 279
NdeII GATC 1 cut(s) 77
NlaIII CATG 2 cut(s) 161, 273
NlaIV GGNNCC 2 cut(s) 11, 29
NmuCI GTSAC 1 cut(s) 153
PflMI CCANNNNNTGG 1 cut(s) 38
PkrI GCNGC 3 cut(s) 70, 73, 136
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PpuMI RGGWCCY 1 cut(s) 302
PsiI TTATAA 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 11, 29
PspPI GGNCC 3 cut(s) 95, 194, 302
PspPPI RGGWCCY 1 cut(s) 302
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 3 cut(s) 69, 72, 135
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 3 cut(s) 95, 194, 302
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 2 cut(s) 32, 187
SetI ASST 3 cut(s) 11, 155, 307
SfaNI GCATC 1 cut(s) 46
SinI GGWCC 2 cut(s) 194, 302
StyD4I CCNGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 155
TaqI TCGA 1 cut(s) 298
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 3 cut(s) 68, 71, 134
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 1 cut(s) 52
Van91I CCANNNNNTGG 1 cut(s) 38
VneI GTGCAC 1 cut(s) 183
VpaK11BI GGWCC 2 cut(s) 194, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.