Rh6AG236600

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000495
Physical Location & Seq
Reverse (-)
42197222 .. 42198064
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG236600.1

Sequence Viewer

Length: 282 bp
ATGTGGCGCGGCGGTAGCAATGATATTGCGGTCTCACGGGCAACTTTCGATCAGATGCTTAAGCATAGAAATGATGGTGGTTGCTCTGCCAAAGGGTTTTATACTTACGATGCCTTCGTTGCAGCTGCCAAGTCCTTCCCCAACTTTGTACAGGGATATAACTTTCTCCAGGAAAAGACTCCTCCATTTTCTACTGTGATCCCAATTTTCCCAACTACCCCTGTGCTGCCAATAAGCAGTATTATGGCTGTGGTCTATGCAACTTTCTTGGTAAGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

93

Amino Acids

10.21

Weight (kDa)

8.89

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 11 - 51 6.5e-15 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 9
AciI CCGC 3 cut(s) 9, 12, 29
AclWI GGATC 1 cut(s) 193
AfaI GTAC 1 cut(s) 150
AflII CTTAAG 1 cut(s) 59
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 1 cut(s) 193
ApeKI GCWGC 3 cut(s) 122, 125, 226
AspLEI GCGC 1 cut(s) 9
BbvI GCAGC 3 cut(s) 112, 134, 213
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 37
BfrI CTTAAG 1 cut(s) 59
BisI GCNGC 4 cut(s) 10, 123, 126, 227
BlsI GCNGC 4 cut(s) 11, 124, 127, 228
Bme1390I CCNGG 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 2 cut(s) 45, 100
BpmI CTGGAG 1 cut(s) 152
BsaI GGTCTC 1 cut(s) 37
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 25
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 3 cut(s) 112, 134, 213
Bsh1236I CGCG 1 cut(s) 9
BsmAI GTCTC 1 cut(s) 37
Bso31I GGTCTC 1 cut(s) 37
Bsp1407I TGTACA 1 cut(s) 148
Bsp143I GATC 2 cut(s) 49, 198
BspACI CCGC 3 cut(s) 9, 12, 29
BspFNI CGCG 1 cut(s) 9
BspPI GGATC 1 cut(s) 193
BspTI CTTAAG 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 25
BsrGI TGTACA 1 cut(s) 148
BssMI GATC 2 cut(s) 49, 198
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 196
BstAFI CTTAAG 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 148
BstFNI CGCG 1 cut(s) 9
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 2 cut(s) 52, 201
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 2 cut(s) 49, 198
BstMWI GCNNNNNNNGC 2 cut(s) 15, 119
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 3 cut(s) 112, 134, 213
CfoI GCGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 149
CviJI RGCY 2 cut(s) 125, 248
CviKI_1 RGCY 2 cut(s) 125, 248
CviQI GTAC 1 cut(s) 149
DpnI GATC 2 cut(s) 51, 200
DpnII GATC 2 cut(s) 49, 198
Eco31I GGTCTC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 168
FaiI YATR 6 cut(s) 66, 102, 159, 245, 258, 280
Fnu4HI GCNGC 4 cut(s) 10, 123, 126, 227
Fsp4HI GCNGC 4 cut(s) 10, 123, 126, 227
GlaI GCGC 1 cut(s) 8
GluI GCNGC 4 cut(s) 10, 123, 126, 227
GsuI CTGGAG 1 cut(s) 152
HhaI GCGC 1 cut(s) 9
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 54
HpyAV CCTTC 2 cut(s) 124, 145
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 2 cut(s) 122, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 119
HspAI GCGC 1 cut(s) 7
Kzo9I GATC 2 cut(s) 49, 198
LpnPI CCDG 4 cut(s) 137, 155, 182, 234
Lsp1109I GCAGC 3 cut(s) 112, 134, 213
LweI GCATC 2 cut(s) 45, 100
MalI GATC 2 cut(s) 51, 200
MboI GATC 2 cut(s) 49, 198
MluCI AATT 1 cut(s) 204
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 1 cut(s) 192
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 125
MspCI CTTAAG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 2 cut(s) 15, 119
NdeII GATC 2 cut(s) 49, 198
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfoI TCCNGGA 1 cut(s) 168
PkrI GCNGC 4 cut(s) 11, 124, 127, 228
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 4 cut(s) 10, 123, 126, 227
Sau3AI GATC 2 cut(s) 49, 198
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 170
SetI ASST 1 cut(s) 127
SfaNI GCATC 2 cut(s) 45, 100
SgeI CNNG 8 cut(s) 20, 48, 50, 142, 164, 181, 182, 233
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 1 cut(s) 204
SsiI CCGC 3 cut(s) 9, 12, 29
StyD4I CCNGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 204
TatI WGTACW 1 cut(s) 148
TauI GCSGC 1 cut(s) 12
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TseI GCWGC 3 cut(s) 122, 125, 226
Vha464I CTTAAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.