Rw2G008980

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000495
Physical Location & Seq
Forward (+)
9022976 .. 9024221
1246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G008980.1

Sequence Viewer

Length: 687 bp
ATGCTGAAATATCGAAACGATGGGCGCTGCCCTAGCAATGGGTTCTACAAGTATGACGCTTTCATTTCTGCTGCTCGATCTTTCAATGGGTTTGGCACAACAGGCGATGTGGCTACCCAGAAAAAAGAGCTTGCTGCTTTCTTGGGTCAAACCTCTCACGAAACCACTGGAGGATGGCCAAGTGCACCAGATGGTCCTTATGCTTGGGGATATTGCTTTATCAGGGAAAACAACCAAGACGTGTACTGCACTCCATCAGCCCAATATCCATGTGCTGCCGGCAAAAAATATTACGGCCGAGGACCAATCCAACTTACTCACAACTACAACTATGCTCAAGCGGGTAGAGCAATCGGAGTGGATCTGATAAACAATCCAGATCTAGTAGCCACAGACCCGGTTGTATCATTCAAGACAGCTATATGGTTTTGGATGACCCCTCAAGGAAACAAACCATCAAGTCACGACGTCATTACCGGTCGTTGGAATCCATCTGCTGCAGATAGATCGGCGGGTCGGGTCCCTGGATATGGAGTGATTACAAACATAATTAATGGCGGACTTGAATGTGGGCATGGTCAAGATGATAGGGTAGTTGATCGGATCGGGTTCTACAAGAGGTACTGTGGCATATTGGGAGTGAGCACGGGGGACAACTTGGACTGTAACAATCAAAGACCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

228

Amino Acids

24.98

Weight (kDa)

8.42

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 1 - 222 3.5e-127 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 471
AciI CCGC 3 cut(s) 341, 512, 558
AclWI GGATC 2 cut(s) 369, 611
AcoI YGGCCR 2 cut(s) 176, 295
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 2 cut(s) 245, 623
AfiI CCNNNNNNNGG 3 cut(s) 38, 483, 530
AflIII ACRYGT 1 cut(s) 240
AgeI ACCGGT 1 cut(s) 476
AgsI TTSAA 3 cut(s) 85, 412, 566
AjiI CACGTC 1 cut(s) 241
AjnI CCWGG 1 cut(s) 523
AluBI AGCT 2 cut(s) 130, 419
AluI AGCT 2 cut(s) 130, 419
Alw21I GWGCWC 2 cut(s) 187, 647
Alw44I GTGCAC 1 cut(s) 183
AlwI GGATC 2 cut(s) 369, 611
AoxI GGCC 2 cut(s) 176, 295
ApaLI GTGCAC 1 cut(s) 183
ApeKI GCWGC 5 cut(s) 27, 71, 134, 275, 497
AseI ATTAAT 1 cut(s) 552
AsiGI ACCGGT 1 cut(s) 476
AspLEI GCGC 1 cut(s) 27
AspS9I GGNCC 3 cut(s) 194, 302, 520
AsuC2I CCSGG 1 cut(s) 398
AvaII GGWCC 3 cut(s) 194, 302, 520
BaeGI GKGCMC 1 cut(s) 187
BalI TGGCCA 1 cut(s) 178
Bbv12I GWGCWC 2 cut(s) 187, 647
BbvI GCAGC 5 cut(s) 14, 58, 121, 262, 484
BccI CCATC 6 cut(s) 14, 168, 185, 262, 463, 499
BceAI ACGGC 1 cut(s) 310
BcgI CGANNNNNNTGC 2 cut(s) 489, 523
BciT130I CCWGG 1 cut(s) 525
BcnI CCSGG 1 cut(s) 398
BfaI CTAG 2 cut(s) 33, 383
BfmI CTRYAG 1 cut(s) 498
BfoI RGCGCY 1 cut(s) 28
BglII AGATCT 1 cut(s) 379
BisI GCNGC 5 cut(s) 28, 72, 135, 276, 498
BlsI GCNGC 5 cut(s) 29, 73, 136, 277, 499
Bme1390I CCNGG 2 cut(s) 398, 525
Bme18I GGWCC 3 cut(s) 194, 302, 520
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 3 cut(s) 194, 302, 520
BmiI GGNNCC 2 cut(s) 521, 522
BmrFI CCNGG 2 cut(s) 398, 525
BpmI CTGGAG 1 cut(s) 189
BpuEI CTTGAG 2 cut(s) 321, 426
BpuMI CCSGG 1 cut(s) 398
BsaHI GRCGYC 1 cut(s) 468
BsaJI CCNNGG 2 cut(s) 298, 523
BsaWI WCCGGW 1 cut(s) 476
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 483, 530
Bse118I RCCGGY 2 cut(s) 278, 476
Bse1I ACTGG 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 2 cut(s) 298, 523
BseGI GGATG 2 cut(s) 179, 438
BseLI CCNNNNNNNGG 3 cut(s) 38, 483, 530
BseMI GCAATG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 172
BseSI GKGCMC 1 cut(s) 187
BseX3I CGGCCG 1 cut(s) 295
BseXI GCAGC 5 cut(s) 14, 58, 121, 262, 484
BsgI GTGCAG 1 cut(s) 232
Bsh1285I CGRYCG 2 cut(s) 298, 481
BshFI GGCC 2 cut(s) 178, 297
BshTI ACCGGT 1 cut(s) 476
BsiEI CGRYCG 2 cut(s) 298, 481
BsiHKAI GWGCWC 2 cut(s) 187, 647
BsiSI CCGG 3 cut(s) 279, 398, 477
BslFI GGGAC 2 cut(s) 506, 665
BslI CCNNNNNNNGG 3 cut(s) 38, 483, 530
BsmFI GGGAC 2 cut(s) 506, 665
BsnI GGCC 2 cut(s) 178, 297
Bsp1286I GDGCHC 2 cut(s) 187, 647
Bsp143I GATC 6 cut(s) 77, 361, 379, 506, 598, 603
BspACI CCGC 3 cut(s) 341, 512, 558
BspANI GGCC 2 cut(s) 178, 297
BspLI GGNNCC 2 cut(s) 521, 522
BspMAI CTGCAG 1 cut(s) 502
BspPI GGATC 2 cut(s) 369, 611
BsrDI GCAATG 1 cut(s) 43
BsrFI RCCGGY 2 cut(s) 278, 476
BsrI ACTGG 1 cut(s) 172
BssAI RCCGGY 2 cut(s) 278, 476
BssECI CCNNGG 2 cut(s) 298, 523
BssMI GATC 6 cut(s) 77, 361, 379, 506, 598, 603
BssNI GRCGYC 1 cut(s) 468
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 2 cut(s) 626, 665
BstACI GRCGYC 1 cut(s) 468
BstC8I GCNNGC 2 cut(s) 132, 280
BstF5I GGATG 2 cut(s) 179, 438
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 6 cut(s) 80, 364, 382, 509, 601, 606
BstMBI GATC 6 cut(s) 77, 361, 379, 506, 598, 603
BstMCI CGRYCG 2 cut(s) 298, 481
BstMWI GCNNNNNNNGC 3 cut(s) 33, 102, 347
BstNI CCWGG 1 cut(s) 525
BstSCI CCNGG 2 cut(s) 396, 523
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 5 cut(s) 14, 58, 121, 262, 484
BstX2I RGATCY 2 cut(s) 361, 379
BstYI RGATCY 2 cut(s) 361, 379
BstZI CGGCCG 1 cut(s) 295
BsuRI GGCC 2 cut(s) 178, 297
BtgZI GCGATG 1 cut(s) 120
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 2 cut(s) 179, 438
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 132, 280
CfoI GCGC 1 cut(s) 27
Cfr10I RCCGGY 2 cut(s) 278, 476
Cfr13I GGNCC 3 cut(s) 194, 302, 520
CseI GACGC 1 cut(s) 65
Csp6I GTAC 2 cut(s) 244, 622
CspAI ACCGGT 1 cut(s) 476
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 2 cut(s) 270, 575
CviJI RGCY 7 cut(s) 113, 130, 178, 260, 297, 389, 419
CviKI_1 RGCY 7 cut(s) 113, 130, 178, 260, 297, 389, 419
CviQI GTAC 2 cut(s) 244, 622
DpnI GATC 6 cut(s) 79, 363, 381, 508, 600, 605
DpnII GATC 6 cut(s) 77, 361, 379, 506, 598, 603
EaeI YGGCCR 2 cut(s) 176, 295
EagI CGGCCG 1 cut(s) 295
EciI GGCGGA 1 cut(s) 573
EclXI CGGCCG 1 cut(s) 295
Eco47I GGWCC 3 cut(s) 194, 302, 520
Eco52I CGGCCG 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 520
EcoRII CCWGG 1 cut(s) 523
FaeI CATG 2 cut(s) 273, 578
FaqI GGGAC 2 cut(s) 506, 665
FatI CATG 2 cut(s) 269, 574
FauI CCCGC 2 cut(s) 334, 505
Fnu4HI GCNGC 5 cut(s) 28, 72, 135, 276, 498
FokI GGATG 2 cut(s) 186, 445
Fsp4HI GCNGC 5 cut(s) 28, 72, 135, 276, 498
FspBI CTAG 2 cut(s) 33, 383
GlaI GCGC 1 cut(s) 26
GluI GCNGC 5 cut(s) 28, 72, 135, 276, 498
GsuI CTGGAG 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 2 cut(s) 178, 297
HapII CCGG 3 cut(s) 279, 398, 477
HgaI GACGC 1 cut(s) 65
HhaI GCGC 1 cut(s) 27
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 2 cut(s) 273, 578
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HinfI GANTC 1 cut(s) 487
HpaII CCGG 3 cut(s) 279, 398, 477
Hpy166II GTNNAC 2 cut(s) 185, 244
Hpy188I TCNGA 3 cut(s) 356, 366, 603
Hpy188III TCNNGA 5 cut(s) 158, 377, 412, 464, 581
Hpy8I GTNNAC 2 cut(s) 185, 244
Hpy99I CGWCG 1 cut(s) 470
HpyCH4III ACNGT 2 cut(s) 626, 665
HpyCH4IV ACGT 2 cut(s) 240, 468
HpyCH4V TGCA 3 cut(s) 185, 249, 500
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 102, 347
HpySE526I ACGT 2 cut(s) 240, 468
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 2 cut(s) 273, 578
HspAI GCGC 1 cut(s) 25
KflI GGGWCCC 1 cut(s) 520
KroI GCCGGC 1 cut(s) 278
KroNI GCCGGC 1 cut(s) 280
Kzo9I GATC 6 cut(s) 77, 361, 379, 506, 598, 603
Lsp1109I GCAGC 5 cut(s) 14, 58, 121, 262, 484
MaeI CTAG 2 cut(s) 33, 383
MaeII ACGT 2 cut(s) 240, 468
MaeIII GTNAC 2 cut(s) 461, 665
MalI GATC 6 cut(s) 79, 363, 381, 508, 600, 605
MboI GATC 6 cut(s) 77, 361, 379, 506, 598, 603
MflI RGATCY 2 cut(s) 361, 379
MhlI GDGCHC 2 cut(s) 187, 647
MlsI TGGCCA 1 cut(s) 178
MluCI AATT 1 cut(s) 549
MluNI TGGCCA 1 cut(s) 178
MmeI TCCRAC 2 cut(s) 334, 464
MnlI CCTC 5 cut(s) 163, 164, 293, 450, 612
Mox20I TGGCCA 1 cut(s) 178
MroNI GCCGGC 1 cut(s) 278
MscI TGGCCA 1 cut(s) 178
MseI TTAA 1 cut(s) 552
Msp20I TGGCCA 1 cut(s) 178
MspI CCGG 3 cut(s) 279, 398, 477
MspR9I CCNGG 2 cut(s) 398, 525
MvaI CCWGG 1 cut(s) 525
MwoI GCNNNNNNNGC 3 cut(s) 33, 102, 347
NaeI GCCGGC 1 cut(s) 280
NciI CCSGG 1 cut(s) 398
NdeII GATC 6 cut(s) 77, 361, 379, 506, 598, 603
NgoMIV GCCGGC 1 cut(s) 278
NlaIII CATG 2 cut(s) 273, 578
NlaIV GGNNCC 2 cut(s) 521, 522
NmeAIII GCCGAG 1 cut(s) 323
NmuCI GTSAC 1 cut(s) 461
PdiI GCCGGC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 487
PinAI ACCGGT 1 cut(s) 476
PkrI GCNGC 5 cut(s) 29, 73, 136, 277, 499
PpuMI RGGWCCY 1 cut(s) 520
PshBI ATTAAT 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 523
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 2 cut(s) 521, 522
PspPI GGNCC 3 cut(s) 194, 302, 520
PspPPI RGGWCCY 1 cut(s) 520
PstI CTGCAG 1 cut(s) 502
PsuI RGATCY 2 cut(s) 361, 379
RsaI GTAC 2 cut(s) 245, 623
RsaNI GTAC 2 cut(s) 244, 622
SaqAI TTAA 1 cut(s) 552
SatI GCNGC 5 cut(s) 28, 72, 135, 276, 498
Sau3AI GATC 6 cut(s) 77, 361, 379, 506, 598, 603
Sau96I GGNCC 3 cut(s) 194, 302, 520
ScrFI CCNGG 2 cut(s) 398, 525
SduI GDGCHC 2 cut(s) 187, 647
SetI ASST 6 cut(s) 132, 155, 243, 421, 471, 623
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 3 cut(s) 194, 302, 520
SmlI CTYRAG 2 cut(s) 336, 441
SmoI CTYRAG 2 cut(s) 336, 441
Sse9I AATT 1 cut(s) 549
SsiI CCGC 3 cut(s) 341, 512, 558
SspI AATATT 1 cut(s) 290
SspMI CTAG 2 cut(s) 33, 383
StyD4I CCNGG 2 cut(s) 396, 523
TaaI ACNGT 2 cut(s) 626, 665
TaiI ACGT 2 cut(s) 243, 471
TaqI TCGA 2 cut(s) 13, 76
TasI AATT 1 cut(s) 549
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 1 cut(s) 487
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 5 cut(s) 27, 71, 134, 275, 497
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 1 cut(s) 52
TspRI CASTG 1 cut(s) 172
VneI GTGCAC 1 cut(s) 183
VpaK11BI GGWCC 3 cut(s) 194, 302, 520
VspI ATTAAT 1 cut(s) 552
XspI CTAG 2 cut(s) 33, 383
ZraI GACGTC 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.