AT3G19340

Protein of unknown function (DUF3754)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000718
Physical Location & Seq
Reverse (-)
6701273 .. 6704312
3040 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19340.1

Sequence Viewer

Length: 1464 bp
ATGGCGGAACAACACAATAAGGAAGTGATTCGTCTTGAGCCCGAATCGGTCATCCCTATCCTCAAACCTAAACTCATCATGACCTTGGCTAATCTCATTGAACATAGCAATGATAGACAAGAGTTCCTTAAGCTATGTAAGAGAATTGAGTACACTGTTCGAGCTTGGTATCTTCTTCAATTTGAAGATCTCATGCAACTATACTCTCTGTTTGATCCTGTACACGGTGCTCAGAAAATCCAGCAGCAGAACTTAACTTCTCAAGAGATTGATGTCCTTGAACAAAATTTCCTAGCTTACTTGTTTCAGGTTATGGAGAAGAGCAACTTTAAAATAACAAGTAATGAAGAGATGGAAGTTGCACACTCTGGGCAGTATCTTCTCAATCTTCCCATCAAAGTTGATGAGTCTAAGCTTGACAAGAAGCTGCTCAAGAGGTATTTTGAGGAGCATCCACATGAAAATATTCCAGATTTTTCTGATAAGTATGTCATCTTCAGACGTGGTATTGGATTGGATAAAACCACAGATTATTTTTTCATGGAGAAATTGGATGTGATCATTTCACGTTTTTGGTCCTTTCTCATGAGAATCACCAGGTTAGAGAAATTACGCGCCAAAAGGTCAAGCAGTCTTAACAAGAAAGATCCCAAAAAAGATGATGAGCCAAACCCTGACACAGATAATGATGAATTGTATGTGGAGCGTATTCGCCTTGAGAATTCAAAGCTGAGCTTTAAGAGTTTTTTGAGCAAGCTCACAATACAGGAGCCTACATTCGATAGAATGATTGTTGTTTATAGACGAGCTAGCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTTCAAAAACATTCCTATGGCTGACATGGAGATTGTGCTTCCTGAGAAAAGAAACCCTGGACTGACTCCAATGGATTGGGTCAAATTTCTAATATCTGCAGTAGTTGGTCTGGTAGCGGTGCTTACTTCGGTTGAGATGCCTAAATCAGATCCATGGGTAATTATTGCCATTCTCTCCACAGTGCTTGGTTATTGTGCGAAAACATACTTCACGTTCCAGCAGAACATGGCTACGTATCAGAACTTGATAACTCAGTCAATGTATGATAAACAACTAGACAGCGGGAGGGGAACGCTACTACATTTGTGTGATGATGTGATTCAGCAAGAAGTAAAAGAGGTAATGATTTGCTTCTACATACTAATGGAGCAGGGGAAAGCTACCTTGGAGGATCTGGATTTGAGGTGCGAGGAACTGATAAAGGAAGAGTTTGGTGCGAGGTGTAACTTTGATGTAGAAGATGCAGTCCAGAAGCTAGAGAAGTTGGGGATAGTTGCTCGGGACACTATTGGAAGGTACTACTGCATGGGGCTGAAGCGAGCCAACGAGATTATAGGGACTACCACGGAGGAGCTTGTCCTCAAGGCCAAACAGGGCGTCACACCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3754

Protein Analysis

487

Amino Acids

56.79

Weight (kDa)

5.92

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3754 PF12576 260 - 381 1.3e-23 Protein of unknown function (DUF3754)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 615
AciI CCGC 3 cut(s) 5, 968, 1134
AclWI GGATC 4 cut(s) 209, 641, 995, 1251
AcsI RAATTY 3 cut(s) 286, 721, 935
AcuI CTGAAG 2 cut(s) 481, 1406
AcyI GRCGYC 1 cut(s) 1449
AfaI GTAC 3 cut(s) 152, 222, 1370
AfiI CCNNNNNNNGG 1 cut(s) 224
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 6 cut(s) 101, 179, 185, 281, 726, 856
AjiI CACGTC 1 cut(s) 503
AjnI CCWGG 2 cut(s) 596, 907
AjuI GAANNNNNNNTTGG 2 cut(s) 1220, 1252
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
Alw21I GWGCWC 1 cut(s) 232
AlwI GGATC 4 cut(s) 209, 641, 995, 1251
Ama87I CYCGRG 1 cut(s) 1350
AoxI GGCC 1 cut(s) 1437
ApeKI GCWGC 2 cut(s) 244, 427
ApoI RAATTY 3 cut(s) 286, 721, 935
ArsI GACNNNNNNTTYG 1 cut(s) 1434
Asp700I GAANNNNTTC 2 cut(s) 27, 465
AspLEI GCGC 1 cut(s) 617
AspS9I GGNCC 1 cut(s) 576
AsuHPI GGTGA 1 cut(s) 586
AsuNHI GCTAGC 1 cut(s) 809
AvaI CYCGRG 1 cut(s) 1350
AvaII GGWCC 1 cut(s) 576
BanII GRGCYC 1 cut(s) 42
BarI GAAGNNNNNNTAC 2 cut(s) 479, 511
Bbv12I GWGCWC 1 cut(s) 232
BbvI GCAGC 2 cut(s) 256, 414
BccI CCATC 2 cut(s) 346, 401
BciT130I CCWGG 2 cut(s) 598, 909
BclI TGATCA 1 cut(s) 558
BfaI CTAG 5 cut(s) 293, 810, 827, 1127, 1328
BfmI CTRYAG 1 cut(s) 948
BfrI CTTAAG 1 cut(s) 128
BglII AGATCT 1 cut(s) 187
BisI GCNGC 2 cut(s) 245, 428
BlpI GCTNAGC 1 cut(s) 731
BlsI GCNGC 2 cut(s) 246, 429
Bme1390I CCNGG 2 cut(s) 598, 909
Bme18I GGWCC 1 cut(s) 576
BmeT110I CYCGRG 1 cut(s) 1350
BmgBI CACGTC 1 cut(s) 503
BmgT120I GGNCC 1 cut(s) 576
BmiI GGNNCC 1 cut(s) 771
BmrFI CCNGG 2 cut(s) 598, 909
BmsI GCATC 3 cut(s) 460, 978, 1303
BmtI GCTAGC 1 cut(s) 813
Bpu1102I GCTNAGC 1 cut(s) 731
BpuEI CTTGAG 5 cut(s) 56, 246, 416, 737, 1418
BsaAI YACGTR 1 cut(s) 1086
BsaHI GRCGYC 1 cut(s) 1449
BsaJI CCNNGG 5 cut(s) 84, 907, 1004, 1236, 1416
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse3DI GCAATG 1 cut(s) 115
BseBI CCWGG 2 cut(s) 598, 909
BseDI CCNNGG 5 cut(s) 84, 907, 1004, 1236, 1416
BseGI GGATG 3 cut(s) 51, 451, 559
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 4 cut(s) 245, 722, 885, 1118
BseRI GAGGAG 2 cut(s) 461, 1436
BseXI GCAGC 2 cut(s) 256, 414
Bsh1236I CGCG 1 cut(s) 615
BshFI GGCC 1 cut(s) 1439
BsiHKAI GWGCWC 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 1350
BslFI GGGAC 2 cut(s) 1367, 1423
BslI CCNNNNNNNGG 1 cut(s) 224
BsmFI GGGAC 2 cut(s) 1367, 1423
BsnI GGCC 1 cut(s) 1439
BsoBI CYCGRG 1 cut(s) 1350
Bsp1286I GDGCHC 2 cut(s) 42, 232
Bsp1407I TGTACA 1 cut(s) 220
Bsp143I GATC 6 cut(s) 187, 214, 558, 646, 1000, 1243
Bsp1720I GCTNAGC 1 cut(s) 731
Bsp19I CCATGG 1 cut(s) 1004
BspACI CCGC 3 cut(s) 5, 968, 1134
BspANI GGCC 1 cut(s) 1439
BspCNI CTCAG 4 cut(s) 244, 723, 886, 1117
BspFNI CGCG 1 cut(s) 615
BspHI TCATGA 2 cut(s) 78, 585
BspLI GGNNCC 1 cut(s) 771
BspMAI CTGCAG 1 cut(s) 952
BspOI GCTAGC 1 cut(s) 813
BspPI GGATC 4 cut(s) 209, 641, 995, 1251
BspQI GCTCTTC 1 cut(s) 314
BspTI CTTAAG 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 115
BsrGI TGTACA 1 cut(s) 220
BssECI CCNNGG 5 cut(s) 84, 907, 1004, 1236, 1416
BssMI GATC 6 cut(s) 187, 214, 558, 646, 1000, 1243
BssNI GRCGYC 1 cut(s) 1449
BssT1I CCWWGG 3 cut(s) 84, 1004, 1236
Bst2UI CCWGG 2 cut(s) 598, 909
Bst4CI ACNGT 3 cut(s) 157, 227, 1033
Bst6I CTCTTC 3 cut(s) 314, 342, 1272
BstACI GRCGYC 1 cut(s) 1449
BstAFI CTTAAG 1 cut(s) 128
BstAUI TGTACA 1 cut(s) 220
BstBAI YACGTR 1 cut(s) 1086
BstC8I GCNNGC 3 cut(s) 755, 811, 1392
BstDEI CTNAG 5 cut(s) 231, 411, 731, 894, 1104
BstDSI CCRYGG 2 cut(s) 1004, 1416
BstF5I GGATG 3 cut(s) 51, 451, 559
BstFNI CGCG 1 cut(s) 615
BstHHI GCGC 1 cut(s) 617
BstKTI GATC 6 cut(s) 190, 217, 561, 649, 1003, 1246
BstMBI GATC 6 cut(s) 187, 214, 558, 646, 1000, 1243
BstNI CCWGG 2 cut(s) 598, 909
BstSCI CCNGG 2 cut(s) 596, 907
BstSFI CTRYAG 1 cut(s) 948
BstSNI TACGTA 1 cut(s) 1086
BstUI CGCG 1 cut(s) 615
BstV1I GCAGC 2 cut(s) 256, 414
BstX2I RGATCY 4 cut(s) 187, 646, 1000, 1243
BstXI CCANNNNNNTGG 1 cut(s) 927
BstYI RGATCY 4 cut(s) 187, 646, 1000, 1243
BsuRI GGCC 1 cut(s) 1439
BtgI CCRYGG 2 cut(s) 1004, 1416
BtrI CACGTC 1 cut(s) 503
BtsCI GGATG 3 cut(s) 51, 451, 559
BtsIMutI CAGTG 2 cut(s) 153, 1038
Cac8I GCNNGC 3 cut(s) 755, 811, 1392
CciI TCATGA 2 cut(s) 78, 585
CfoI GCGC 1 cut(s) 617
Cfr13I GGNCC 1 cut(s) 576
CseI GACGC 1 cut(s) 1438
CsiI ACCWGGT 1 cut(s) 596
Csp6I GTAC 3 cut(s) 151, 221, 1369
CspCI CAANNNNNGTGG 2 cut(s) 1018, 1053
CviAII CATG 9 cut(s) 79, 193, 458, 541, 586, 877, 1005, 1078, 1378
CviQI GTAC 3 cut(s) 151, 221, 1369
DdeI CTNAG 5 cut(s) 231, 411, 731, 894, 1104
DpnI GATC 6 cut(s) 189, 216, 560, 648, 1002, 1245
DpnII GATC 6 cut(s) 187, 214, 558, 646, 1000, 1243
DraI TTTAAA 1 cut(s) 331
Eam1104I CTCTTC 3 cut(s) 314, 342, 1272
EarI CTCTTC 3 cut(s) 314, 342, 1272
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 1086
Eco130I CCWWGG 3 cut(s) 84, 1004, 1236
Eco24I GRGCYC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 576
Eco57I CTGAAG 2 cut(s) 481, 1406
Eco88I CYCGRG 1 cut(s) 1350
EcoRI GAATTC 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 596, 907
EcoT14I CCWWGG 3 cut(s) 84, 1004, 1236
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 3 cut(s) 84, 1004, 1236
FaeI CATG 9 cut(s) 82, 196, 461, 544, 589, 880, 1008, 1081, 1381
FalI AAGNNNNNCTT 6 cut(s) 111, 143, 311, 343, 719, 751
FaqI GGGAC 2 cut(s) 1367, 1423
FatI CATG 9 cut(s) 78, 192, 457, 540, 585, 876, 1004, 1077, 1377
FauI CCCGC 1 cut(s) 1127
FbaI TGATCA 1 cut(s) 558
Fnu4HI GCNGC 2 cut(s) 245, 428
FokI GGATG 3 cut(s) 38, 438, 566
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 2 cut(s) 245, 428
FspBI CTAG 5 cut(s) 293, 810, 827, 1127, 1328
GlaI GCGC 1 cut(s) 616
GluI GCNGC 2 cut(s) 245, 428
HaeIII GGCC 1 cut(s) 1439
HgaI GACGC 1 cut(s) 1438
HhaI GCGC 1 cut(s) 617
Hin1I GRCGYC 1 cut(s) 1449
Hin1II CATG 9 cut(s) 82, 196, 461, 544, 589, 880, 1008, 1081, 1381
Hin6I GCGC 1 cut(s) 615
HinP1I GCGC 1 cut(s) 615
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 7 cut(s) 28, 44, 407, 591, 837, 916, 1171
HphI GGTGA 1 cut(s) 586
Hpy166II GTNNAC 2 cut(s) 153, 223
Hpy188I TCNGA 5 cut(s) 234, 481, 500, 1000, 1092
Hpy8I GTNNAC 2 cut(s) 153, 223
HpyAV CCTTC 1 cut(s) 1359
HpyCH4III ACNGT 3 cut(s) 157, 227, 1033
HpyCH4IV ACGT 5 cut(s) 502, 568, 843, 1064, 1085
HpyCH4V TGCA 5 cut(s) 196, 362, 950, 1316, 1377
HpyF3I CTNAG 5 cut(s) 231, 411, 731, 894, 1104
HpySE526I ACGT 5 cut(s) 502, 568, 843, 1064, 1085
Hsp92I GRCGYC 1 cut(s) 1449
Hsp92II CATG 9 cut(s) 82, 196, 461, 544, 589, 880, 1008, 1081, 1381
HspAI GCGC 1 cut(s) 615
Ksp22I TGATCA 1 cut(s) 558
Kzo9I GATC 6 cut(s) 187, 214, 558, 646, 1000, 1243
LguI GCTCTTC 1 cut(s) 314
LmnI GCTCC 5 cut(s) 448, 703, 769, 1219, 1423
Lsp1109I GCAGC 2 cut(s) 256, 414
LweI GCATC 3 cut(s) 460, 978, 1303
MabI ACCWGGT 1 cut(s) 596
MaeI CTAG 5 cut(s) 293, 810, 827, 1127, 1328
MaeII ACGT 5 cut(s) 502, 568, 843, 1064, 1085
MaeIII GTNAC 2 cut(s) 1295, 1450
MalI GATC 6 cut(s) 189, 216, 560, 648, 1002, 1245
MboI GATC 6 cut(s) 187, 214, 558, 646, 1000, 1243
MflI RGATCY 4 cut(s) 187, 646, 1000, 1243
MhlI GDGCHC 2 cut(s) 42, 232
MluCI AATT 9 cut(s) 144, 179, 286, 548, 608, 692, 721, 935, 1011
MlyI GAGTC 2 cut(s) 416, 910
MroXI GAANNNNTTC 2 cut(s) 27, 465
MseI TTAA 6 cut(s) 129, 254, 330, 636, 738, 846
MslI CAYNNNNRTG 5 cut(s) 108, 456, 866, 1158, 1214
MspA1I CMGCKG 1 cut(s) 1134
MspCI CTTAAG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 598, 909
MvaI CCWGG 2 cut(s) 598, 909
MvnI CGCG 1 cut(s) 615
NcoI CCATGG 1 cut(s) 1004
NdeII GATC 6 cut(s) 187, 214, 558, 646, 1000, 1243
NheI GCTAGC 1 cut(s) 809
NlaIII CATG 9 cut(s) 82, 196, 461, 544, 589, 880, 1008, 1081, 1381
NlaIV GGNNCC 1 cut(s) 771
NmuCI GTSAC 1 cut(s) 1450
PagI TCATGA 2 cut(s) 78, 585
PciSI GCTCTTC 1 cut(s) 314
PdmI GAANNNNTTC 2 cut(s) 27, 465
PfeI GAWTC 5 cut(s) 28, 44, 591, 837, 1171
PkrI GCNGC 2 cut(s) 246, 429
PleI GAGTC 2 cut(s) 415, 910
PpsI GAGTC 2 cut(s) 415, 910
Ppu21I YACGTR 1 cut(s) 1086
Psp6I CCWGG 2 cut(s) 596, 907
PspGI CCWGG 2 cut(s) 596, 907
PspN4I GGNNCC 1 cut(s) 771
PspPI GGNCC 1 cut(s) 576
PstI CTGCAG 1 cut(s) 952
PsuI RGATCY 4 cut(s) 187, 646, 1000, 1243
RsaI GTAC 3 cut(s) 152, 222, 1370
RsaNI GTAC 3 cut(s) 151, 221, 1369
RseI CAYNNNNRTG 5 cut(s) 108, 456, 866, 1158, 1214
SapI GCTCTTC 1 cut(s) 314
SaqAI TTAA 6 cut(s) 129, 254, 330, 636, 738, 846
SatI GCNGC 2 cut(s) 245, 428
Sau3AI GATC 6 cut(s) 187, 214, 558, 646, 1000, 1243
Sau96I GGNCC 1 cut(s) 576
SchI GAGTC 2 cut(s) 416, 910
ScrFI CCNGG 2 cut(s) 598, 909
SduI GDGCHC 2 cut(s) 42, 232
SexAI ACCWGGT 1 cut(s) 596
SfaNI GCATC 3 cut(s) 460, 978, 1303
SfcI CTRYAG 1 cut(s) 948
SinI GGWCC 1 cut(s) 576
SmiMI CAYNNNNRTG 5 cut(s) 108, 456, 866, 1158, 1214
SmlI CTYRAG 6 cut(s) 35, 128, 261, 431, 716, 1433
SmoI CTYRAG 6 cut(s) 35, 128, 261, 431, 716, 1433
SnaBI TACGTA 1 cut(s) 1086
Sse9I AATT 9 cut(s) 144, 179, 286, 548, 608, 692, 721, 935, 1011
SsiI CCGC 3 cut(s) 5, 968, 1134
SspI AATATT 1 cut(s) 466
SspMI CTAG 5 cut(s) 293, 810, 827, 1127, 1328
StyD4I CCNGG 2 cut(s) 596, 907
StyI CCWWGG 3 cut(s) 84, 1004, 1236
TaaI ACNGT 3 cut(s) 157, 227, 1033
TaiI ACGT 5 cut(s) 505, 571, 846, 1067, 1088
TaqI TCGA 2 cut(s) 160, 780
TaqII GACCGA 1 cut(s) 37
TasI AATT 9 cut(s) 144, 179, 286, 548, 608, 692, 721, 935, 1011
TatI WGTACW 2 cut(s) 150, 220
TfiI GAWTC 5 cut(s) 28, 44, 591, 837, 1171
Tru1I TTAA 6 cut(s) 129, 254, 330, 636, 738, 846
Tru9I TTAA 6 cut(s) 129, 254, 330, 636, 738, 846
TscAI CASTG 2 cut(s) 160, 1038
TseFI GTSAC 1 cut(s) 1450
TseI GCWGC 2 cut(s) 244, 427
Tsp45I GTSAC 1 cut(s) 1450
TspDTI ATGAA 4 cut(s) 360, 474, 529, 705
TspGWI ACGGA 1 cut(s) 1433
TspRI CASTG 2 cut(s) 160, 1038
Vha464I CTTAAG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 576
XapI RAATTY 3 cut(s) 286, 721, 935
XbaI TCTAGA 1 cut(s) 826
XmnI GAANNNNTTC 2 cut(s) 27, 465
XspI CTAG 5 cut(s) 293, 810, 827, 1127, 1328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.