Rmu_sc0003517.1_g000001

Protein of unknown function (DUF3754)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003517.1
OG0000718
Physical Location & Seq
Reverse (-)
2 .. 660
659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003517.1_g000001.1.cds

Sequence Viewer

Length: 299 bp
atggaaaaaaccgcgtcccagaagaagaaagacatgattcgaatagagcgcgagtccgtgattccggttctcaagcccaagctcatcatgtccttggccaacctcattgaacatagttccgaccgggcggagtttttaaagctctgcaagagaattgagtacacgattcgggcttggtatctgctacaattcgaggatttgatgcaactgtattcgctatttgaccccgtccatgggaatcaaaaattggagcaacagaatctttctcctaaagagattgatgtactggaacagaattt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3754

Protein Analysis

99

Amino Acids

11.75

Weight (kDa)

6.73

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 14, 51
AciI CCGC 2 cut(s) 12, 128
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 1 cut(s) 295
AfaI GTAC 2 cut(s) 161, 285
AfiI CCNNNNNNNGG 2 cut(s) 233, 234
AgsI TTSAA 1 cut(s) 110
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 2 cut(s) 82, 142
AluI AGCT 2 cut(s) 82, 142
AoxI GGCC 1 cut(s) 96
ApoI RAATTY 1 cut(s) 295
AspLEI GCGC 1 cut(s) 51
AsuC2I CCSGG 1 cut(s) 125
AsuII TTCGAA 1 cut(s) 40
BalI TGGCCA 1 cut(s) 98
BcnI CCSGG 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 1 cut(s) 192
Bpu14I TTCGAA 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 93, 232
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 234
Bse1I ACTGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 93, 232
BseLI CCNNNNNNNGG 2 cut(s) 233, 234
BseNI ACTGG 1 cut(s) 291
Bsh1236I CGCG 2 cut(s) 14, 51
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 124
BsiSI CCGG 2 cut(s) 65, 124
BslI CCNNNNNNNGG 2 cut(s) 233, 234
BsnI GGCC 1 cut(s) 98
Bsp119I TTCGAA 1 cut(s) 40
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 2 cut(s) 12, 128
BspANI GGCC 1 cut(s) 98
BspFNI CGCG 2 cut(s) 14, 51
BspT104I TTCGAA 1 cut(s) 40
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 2 cut(s) 93, 232
BssT1I CCWWGG 2 cut(s) 93, 232
Bst4CI ACNGT 1 cut(s) 210
BstBI TTCGAA 1 cut(s) 40
BstDSI CCRYGG 1 cut(s) 232
BstFNI CGCG 2 cut(s) 14, 51
BstHHI GCGC 1 cut(s) 51
BstMCI CGRYCG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 123
BstUI CGCG 2 cut(s) 14, 51
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 232
CfoI GCGC 1 cut(s) 51
CseI GACGC 1 cut(s) 3
Csp6I GTAC 2 cut(s) 160, 284
CviAII CATG 3 cut(s) 34, 88, 233
CviJI RGCY 5 cut(s) 76, 82, 98, 142, 173
CviKI_1 RGCY 5 cut(s) 76, 82, 98, 142, 173
CviQI GTAC 2 cut(s) 160, 284
DraI TTTAAA 1 cut(s) 138
EaeI YGGCCR 1 cut(s) 96
EciI GGCGGA 1 cut(s) 143
Eco130I CCWWGG 2 cut(s) 93, 232
EcoT14I CCWWGG 2 cut(s) 93, 232
ErhI CCWWGG 2 cut(s) 93, 232
FaeI CATG 3 cut(s) 37, 91, 236
FaiI YATR 4 cut(s) 35, 89, 114, 234
FatI CATG 3 cut(s) 33, 87, 232
GlaI GCGC 1 cut(s) 50
HaeIII GGCC 1 cut(s) 98
HapII CCGG 2 cut(s) 65, 124
HgaI GACGC 1 cut(s) 3
HhaI GCGC 1 cut(s) 51
Hin1II CATG 3 cut(s) 37, 91, 236
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HinfI GANTC 6 cut(s) 37, 53, 61, 166, 238, 259
HpaII CCGG 2 cut(s) 65, 124
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 162
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 2 cut(s) 147, 205
Hsp92II CATG 3 cut(s) 37, 91, 236
HspAI GCGC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 4 cut(s) 32, 78, 137, 272
LweI GCATC 1 cut(s) 192
MboII GAAGA 2 cut(s) 34, 37
MlsI TGGCCA 1 cut(s) 98
MluCI AATT 4 cut(s) 153, 188, 245, 295
MluNI TGGCCA 1 cut(s) 98
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 2 cut(s) 113, 187
Mox20I TGGCCA 1 cut(s) 98
MscI TGGCCA 1 cut(s) 98
MseI TTAA 1 cut(s) 137
Msp20I TGGCCA 1 cut(s) 98
MspI CCGG 2 cut(s) 65, 124
MspR9I CCNGG 1 cut(s) 125
MvnI CGCG 2 cut(s) 14, 51
NciI CCSGG 1 cut(s) 125
NcoI CCATGG 1 cut(s) 232
NlaIII CATG 3 cut(s) 37, 91, 236
NspV TTCGAA 1 cut(s) 40
PfeI GAWTC 5 cut(s) 37, 61, 166, 238, 259
PflFI GACNNNGTC 1 cut(s) 227
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 2 cut(s) 161, 285
RsaNI GTAC 2 cut(s) 160, 284
SaqAI TTAA 1 cut(s) 137
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 125
SetI ASST 3 cut(s) 84, 105, 144
SfaNI GCATC 1 cut(s) 192
SfuI TTCGAA 1 cut(s) 40
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 4 cut(s) 153, 188, 245, 295
SsiI CCGC 2 cut(s) 12, 128
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 2 cut(s) 93, 232
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 40, 192
TasI AATT 4 cut(s) 153, 188, 245, 295
TatI WGTACW 2 cut(s) 159, 283
TfiI GAWTC 5 cut(s) 37, 61, 166, 238, 259
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TspGWI ACGGA 1 cut(s) 46
Tth111I GACNNNGTC 1 cut(s) 227
XapI RAATTY 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.