Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000718

Physical Location & Seq

Genomic Coordinates Forward (+)

35745357 .. 35747249

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034042

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTTGAGAATGGTTCTGCAACTGGAACTGCTCCTCTTTCTTTGCATCATAATTCTTATCAGTACCCCCCTAAATCTTTCCTTAGCTTCTGATTTAGAACTAGGCGCTGATGATGATGAGTTTAAAAGGGACGACTTTCCTCCCTCACCGGACTTTGGTTTTGGTGCTTCCTCCTCTGCTTATCAGGGCCTGGATTTGCTCCAACAGGTGGAAGGAACCCCAAGCATCTTGGGCACGTATGCGCATGCTGGGACAGAGAGAGAGGAAGAAGGGAGAAAAGAAGAGGAGGGGGACGGGAAGCTCTCAGGGAAATCATCAGCCCGGGCAGTCCAACCCGAAGTTGTTGGTGGCCATCCAGCAGGTGTGGAGTTTTTTGCAGAGATTCATGACTTTGTAGTTGAGGATAAAGCCAAGTTGTACCCTTCTGTTAAAGTTGATGTATCCATTACTATAATAGAAGCAAGCTCTCATATTTTGGACATAATCCTAATATTGATGACTGGATACTTGAGTGATGCAACTATGGCTGAGGATCCCTTATCTATTTGCATGACTATAATGATTGGGAGCTCATATTTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko00460 ko00500 ko00940 ko01100 ko01110 ko01120 map00230 map00460 map00500 map00940 map01100 map01110 map01120

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

195

Amino Acids

21.03

Weight (kDa)

4.27

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19340
fragaria_vesca	FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g54351 FvH4_6g54352
malus_domestica	MD09G1002100.v1.1 MD09G1035500.v1.1 MD17G1006300.v1.1
prunus_persica	Prupe.3G282800_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1
pyrus_communis	pycom111g02830 pycom17g00180
rosa_chinensis	RchiOBHm_Chr2g0171021 RchiOBHm_Chr2g0171051 RchiOBHm_Chr2g0176571 RchiOBHm_Chr2g0176581 RchiOBHm_Chr2g0176591 RchiOBHm_Chr4g0402101
rosa_laevigata	RLG00000019532 RLG00000021999 RLG00000022426 RLG00000022427 RLG00000030813 RLG00000034042
rosa_multiflora	Rmu_co8282945.1_g000001 Rmu_sc0001417.1_g000012 Rmu_sc0001782.1_g000018 Rmu_sc0003517.1_g000001 Rmu_sc0007623.1_g000005 Rmu_sc0035601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025090 Rroxscaffold_2G00076280 Rroxscaffold_2G00076290 Rroxscaffold_2G00080870 Rroxscaffold_2G00080890 Rroxscaffold_2G00133310 Rroxscaffold_5G00340280
rosa_rugosa	Rorug02G0552900 Rorug02G0553300 Rorug02G0596200 Rorug05G0287200
rosa_samantha	Rh2AG625400 Rh2AG626600 Rh2AG626800 Rh2AG674200 Rh2AG674300 Rh2BG636700 Rh2BG685400 Rh2CG604900 Rh2CG605700 Rh2CG648400 Rh2CG648500 Rh2CG648600 Rh2DG390600 Rh2DG648400 Rh2DG699300 Rh2DG699400 Rh2DG699500 Rh3AG109000 Rh4DG067200 Rh5AG358400 Rh6CG152900 Rh6CG159900 Rh7AG305100
rosa_wichuraiana	Rw2G029960 Rw2G051860 Rw2G051880 Rw2G055300 Rw2G055310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	350
Acc16I	TGCGCA	1 cut(s)	243
Acc36I	ACCTGC	1 cut(s)	350
AccB7I	CCANNNNNTGG	1 cut(s)	208
AclWI	GGATC	2 cut(s)	527, 540
AcoI	YGGCCR	1 cut(s)	349
AfaI	GTAC	2 cut(s)	64, 419
AfiI	CCNNNNNNNGG	2 cut(s)	155, 208
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	4 cut(s)	86, 301, 465, 570
AluI	AGCT	4 cut(s)	86, 301, 465, 570
Alw21I	GWGCWC	1 cut(s)	572
AlwI	GGATC	2 cut(s)	527, 540
AlwNI	CAGNNNCTG	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	321
AoxI	GGCC	2 cut(s)	187, 349
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspLEI	GCGC	2 cut(s)	107, 244
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	2 cut(s)	322, 323
AsuHPI	GGTGA	1 cut(s)	138
AvaI	CYCGRG	1 cut(s)	321
BaeGI	GKGCMC	1 cut(s)	236
BaeI	ACNNNNGTAYC	2 cut(s)	496, 529
BalI	TGGCCA	1 cut(s)	351
BamHI	GGATCC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	572
Bbv12I	GWGCWC	1 cut(s)	572
BbvCI	CCTCAGC	1 cut(s)	528
BccI	CCATC	1 cut(s)	360
BciT130I	CCWGG	1 cut(s)	191
BciVI	GTATCC	2 cut(s)	451, 497
BcnI	CCSGG	2 cut(s)	322, 323
BfaI	CTAG	1 cut(s)	101
BfoI	RGCGCY	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	350
BfuI	GTATCC	2 cut(s)	451, 497
Bme1390I	CCNGG	3 cut(s)	191, 322, 323
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	217, 534
BmrFI	CCNGG	3 cut(s)	191, 322, 323
BmsI	GCATC	3 cut(s)	54, 234, 505
Bpu10I	CCTNAGC	2 cut(s)	82, 528
BpuEI	CTTGAG	1 cut(s)	529
BpuMI	CCSGG	2 cut(s)	322, 323
BsaAI	YACGTR	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	321
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 208
Bse1I	ACTGG	2 cut(s)	27, 505
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	2 cut(s)	155, 208
BseMII	CTCAG	2 cut(s)	318, 519
BseNI	ACTGG	2 cut(s)	27, 505
BseRI	GAGGAG	3 cut(s)	23, 163, 299
BseSI	GKGCMC	1 cut(s)	236
BseYI	CCCAGC	1 cut(s)	248
BshFI	GGCC	2 cut(s)	189, 351
BsiHKAI	GWGCWC	1 cut(s)	572
BsiHKCI	CYCGRG	1 cut(s)	321
BsiSI	CCGG	2 cut(s)	149, 322
BslFI	GGGAC	3 cut(s)	143, 265, 305
BslI	CCNNNNNNNGG	2 cut(s)	155, 208
BsmFI	GGGAC	3 cut(s)	143, 265, 305
BsnI	GGCC	2 cut(s)	189, 351
BsoBI	CYCGRG	1 cut(s)	321
Bsp1286I	GDGCHC	2 cut(s)	236, 572
Bsp143I	GATC	1 cut(s)	532
BspANI	GGCC	2 cut(s)	189, 351
BspCNI	CTCAG	2 cut(s)	317, 520
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	217, 534
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	2 cut(s)	527, 540
BsrI	ACTGG	2 cut(s)	27, 505
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	1 cut(s)	532
Bst2UI	CCWGG	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	246, 463
BstDEI	CTNAG	3 cut(s)	82, 304, 528
BstF5I	GGATG	1 cut(s)	352
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	2 cut(s)	107, 244
BstKTI	GATC	1 cut(s)	535
BstMBI	GATC	1 cut(s)	532
BstMWI	GCNNNNNNNGC	2 cut(s)	231, 524
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	3 cut(s)	189, 320, 321
BstSLI	GKGCMC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuI	GTATCC	2 cut(s)	451, 497
BsuRI	GGCC	2 cut(s)	189, 351
BtsCI	GGATG	1 cut(s)	352
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	2 cut(s)	246, 463
CaiI	CAGNNNCTG	1 cut(s)	190
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	2 cut(s)	107, 244
Cfr13I	GGNCC	1 cut(s)	187
Cfr9I	CCCGGG	1 cut(s)	321
Csp6I	GTAC	2 cut(s)	63, 418
CviAII	CATG	3 cut(s)	245, 386, 550
CviJI	RGCY	9 cut(s)	86, 189, 301, 320, 351, 410, 465, 527, 570
CviKI_1	RGCY	9 cut(s)	86, 189, 301, 320, 351, 410, 465, 527, 570
CviQI	GTAC	2 cut(s)	63, 418
DdeI	CTNAG	3 cut(s)	82, 304, 528
DpnI	GATC	1 cut(s)	534
DpnII	GATC	1 cut(s)	532
DraI	TTTAAA	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	570
Eco24I	GRGCYC	1 cut(s)	572
Eco53kI	GAGCTC	1 cut(s)	570
Eco88I	CYCGRG	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	570
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	572
FaeI	CATG	3 cut(s)	248, 389, 553
FaqI	GGGAC	3 cut(s)	143, 265, 305
FatI	CATG	3 cut(s)	244, 385, 549
FokI	GGATG	1 cut(s)	339
FriOI	GRGCYC	1 cut(s)	572
FspAI	RTGCGCAY	1 cut(s)	243
FspBI	CTAG	1 cut(s)	101
FspI	TGCGCA	1 cut(s)	243
GlaI	GCGC	2 cut(s)	106, 243
GsaI	CCCAGC	1 cut(s)	252
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	189, 351
HapII	CCGG	2 cut(s)	149, 322
HhaI	GCGC	2 cut(s)	107, 244
Hin1II	CATG	3 cut(s)	248, 389, 553
Hin6I	GCGC	2 cut(s)	105, 242
HinP1I	GCGC	2 cut(s)	105, 242
HinfI	GANTC	1 cut(s)	382
HpaII	CCGG	2 cut(s)	149, 322
HphI	GGTGA	1 cut(s)	138
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	1 cut(s)	386
HpyAV	CCTTC	3 cut(s)	206, 263, 432
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	5 cut(s)	19, 45, 377, 518, 549
HpyF10VI	GCNNNNNNNGC	2 cut(s)	231, 524
HpyF3I	CTNAG	3 cut(s)	82, 304, 528
HpySE526I	ACGT	1 cut(s)	236
Hsp92II	CATG	3 cut(s)	248, 389, 553
HspAI	GCGC	2 cut(s)	105, 242
Kzo9I	GATC	1 cut(s)	532
LmnI	GCTCC	3 cut(s)	36, 204, 567
LweI	GCATC	3 cut(s)	54, 234, 505
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	236
MalI	GATC	1 cut(s)	534
MboI	GATC	1 cut(s)	532
MboII	GAAGA	2 cut(s)	278, 293
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	2 cut(s)	236, 572
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	1 cut(s)	51
MluNI	TGGCCA	1 cut(s)	351
MmeI	TCCRAC	2 cut(s)	226, 355
Mox20I	TGGCCA	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	3 cut(s)	123, 429, 583
Msp20I	TGGCCA	1 cut(s)	351
MspI	CCGG	2 cut(s)	149, 322
MspR9I	CCNGG	3 cut(s)	191, 322, 323
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	231, 524
NciI	CCSGG	2 cut(s)	322, 323
NdeII	GATC	1 cut(s)	532
NlaIII	CATG	3 cut(s)	248, 389, 553
NlaIV	GGNNCC	2 cut(s)	217, 534
NsbI	TGCGCA	1 cut(s)	243
NspI	RCATGY	1 cut(s)	248
PaeI	GCATGC	1 cut(s)	248
PagI	TCATGA	1 cut(s)	385
PaqCI	CACCTGC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	237
Psp124BI	GAGCTC	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	217, 534
PspPI	GGNCC	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	532
RsaI	GTAC	2 cut(s)	64, 419
RsaNI	GTAC	2 cut(s)	63, 418
SacI	GAGCTC	1 cut(s)	572
SaqAI	TTAA	3 cut(s)	123, 429, 583
Sau3AI	GATC	1 cut(s)	532
Sau96I	GGNCC	1 cut(s)	187
ScrFI	CCNGG	3 cut(s)	191, 322, 323
SduI	GDGCHC	2 cut(s)	236, 572
SetI	ASST	7 cut(s)	88, 210, 239, 303, 364, 467, 572
SfaNI	GCATC	3 cut(s)	54, 234, 505
SmaI	CCCGGG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
SphI	GCATGC	1 cut(s)	248
SrfI	GCCCGGGC	1 cut(s)	323
Sse9I	AATT	1 cut(s)	51
SspI	AATATT	1 cut(s)	492
SspMI	CTAG	1 cut(s)	101
SstI	GAGCTC	1 cut(s)	572
StyD4I	CCNGG	3 cut(s)	189, 320, 321
TaiI	ACGT	1 cut(s)	239
TasI	AATT	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	3 cut(s)	123, 429, 583
Tru9I	TTAA	3 cut(s)	123, 429, 583
TspDTI	ATGAA	1 cut(s)	374
TspMI	CCCGGG	1 cut(s)	321
Van91I	CCANNNNNTGG	1 cut(s)	208
XceI	RCATGY	1 cut(s)	248
XmaI	CCCGGG	1 cut(s)	321
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.