Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001782.1

Orthogroup ID

OG0000718

Physical Location & Seq

Genomic Coordinates Reverse (-)

101606 .. 104122

Gene Structure 2517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001782.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgtctgatgaaggaagagtgcattgcaggaatgcatccaatccctaccatgaatgcagtgagttttgcttcaaagttattgctgaaaccaaagctcggatggatcaaaatcaatcagaatctgtacaagttagtagtggtagtggcaaatcaaaattagaggctgctcagcaagaggaagatctagatagaccatcagagactgatgaacatgctggtgatggtgatgagcctcatgttgacgaggaggagaatatggaaggagacttcacgaagttcacagggaggaagaaaaagttgtgggaattaaggatgaagatggtaagaacaagggacagagagagagaggaagaagggagaaaagaagaggagggggacgggaagctctcagggaaatcatcaggccggacagtccaacccgaaggtgtggagttttctgcagagattcatgactttgtagttgaggataaagccaagttctacccttctgttaaagatgatgtatccattactataatagaagcaagctctcatactttggacatgcgagtaaggcatttacatttctgtaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SYF2

Protein Analysis

191

Amino Acids

21.8

Weight (kDa)

5.0

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19340
fragaria_vesca	FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g54351 FvH4_6g54352
malus_domestica	MD09G1002100.v1.1 MD09G1035500.v1.1 MD17G1006300.v1.1
prunus_persica	Prupe.3G282800_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1
pyrus_communis	pycom111g02830 pycom17g00180
rosa_chinensis	RchiOBHm_Chr2g0171021 RchiOBHm_Chr2g0171051 RchiOBHm_Chr2g0176571 RchiOBHm_Chr2g0176581 RchiOBHm_Chr2g0176591 RchiOBHm_Chr4g0402101
rosa_laevigata	RLG00000019532 RLG00000021999 RLG00000022426 RLG00000022427 RLG00000030813 RLG00000034042
rosa_multiflora	Rmu_co8282945.1_g000001 Rmu_sc0001417.1_g000012 Rmu_sc0001782.1_g000018 Rmu_sc0003517.1_g000001 Rmu_sc0007623.1_g000005 Rmu_sc0035601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025090 Rroxscaffold_2G00076280 Rroxscaffold_2G00076290 Rroxscaffold_2G00080870 Rroxscaffold_2G00080890 Rroxscaffold_2G00133310 Rroxscaffold_5G00340280
rosa_rugosa	Rorug02G0552900 Rorug02G0553300 Rorug02G0596200 Rorug05G0287200
rosa_samantha	Rh2AG625400 Rh2AG626600 Rh2AG626800 Rh2AG674200 Rh2AG674300 Rh2BG636700 Rh2BG685400 Rh2CG604900 Rh2CG605700 Rh2CG648400 Rh2CG648500 Rh2CG648600 Rh2DG390600 Rh2DG648400 Rh2DG699300 Rh2DG699400 Rh2DG699500 Rh3AG109000 Rh4DG067200 Rh5AG358400 Rh6CG152900 Rh6CG159900 Rh7AG305100
rosa_wichuraiana	Rw2G029960 Rw2G051860 Rw2G051880 Rw2G055300 Rw2G055310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	73
AluBI	AGCT	3 cut(s)	95, 385, 528
AluI	AGCT	3 cut(s)	95, 385, 528
Alw26I	GTCTC	2 cut(s)	194, 258
AlwI	GGATC	1 cut(s)	111
AlwNI	CAGNNNCTG	2 cut(s)	122, 203
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	230, 236
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	4 cut(s)	94, 202, 215, 313
BciVI	GTATCC	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	194, 258
BfaI	CTAG	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	438
BfuI	GTATCC	1 cut(s)	514
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	1 cut(s)	165
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	166
BmsI	GCATC	1 cut(s)	44
Bpu1102I	GCTNAGC	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	22
Bse8I	GATNNNNATC	1 cut(s)	108
BseGI	GGATG	3 cut(s)	35, 105, 318
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	22
BseMII	CTCAG	2 cut(s)	182, 402
BseRI	GAGGAG	3 cut(s)	260, 263, 383
BseXI	GCAGC	1 cut(s)	151
BshFI	GGCC	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	406
BslFI	GGGAC	2 cut(s)	347, 389
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	2 cut(s)	194, 258
BsmFI	GGGAC	2 cut(s)	347, 389
BsmI	GAATGC	2 cut(s)	37, 59
BsnI	GGCC	1 cut(s)	405
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	103, 181
Bsp1720I	GCTNAGC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	2 cut(s)	181, 401
BspHI	TCATGA	1 cut(s)	448
BspMAI	CTGCAG	1 cut(s)	442
BspPI	GGATC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	22
BsrGI	TGTACA	1 cut(s)	124
BssMI	GATC	2 cut(s)	103, 181
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	2 cut(s)	10, 360
BstAUI	TGTACA	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	2 cut(s)	168, 388
BstF5I	GGATG	3 cut(s)	35, 105, 318
BstKTI	GATC	2 cut(s)	106, 184
BstMAI	GTCTC	2 cut(s)	194, 258
BstMBI	GATC	2 cut(s)	103, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	553
BstNSI	RCATGY	2 cut(s)	215, 547
BstSFI	CTRYAG	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	514
BsuRI	GGCC	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	35, 105, 318
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	526
CaiI	CAGNNNCTG	2 cut(s)	122, 203
CciI	TCATGA	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	5 cut(s)	50, 212, 236, 449, 544
CviJI	RGCY	7 cut(s)	95, 164, 232, 385, 405, 473, 528
CviKI_1	RGCY	7 cut(s)	95, 164, 232, 385, 405, 473, 528
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	2 cut(s)	168, 388
DpnI	GATC	2 cut(s)	105, 183
DpnII	GATC	2 cut(s)	103, 181
Eam1104I	CTCTTC	2 cut(s)	10, 360
EarI	CTCTTC	2 cut(s)	10, 360
EcoT22I	ATGCAT	1 cut(s)	37
FaeI	CATG	5 cut(s)	53, 215, 239, 452, 547
FaiI	YATR	8 cut(s)	51, 213, 237, 257, 450, 515, 534, 545
FaqI	GGGAC	2 cut(s)	347, 389
FatI	CATG	5 cut(s)	49, 211, 235, 448, 543
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	3 cut(s)	22, 112, 325
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	1 cut(s)	406
Hin1II	CATG	5 cut(s)	53, 215, 239, 452, 547
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	2 cut(s)	119, 445
HpaII	CCGG	1 cut(s)	406
HphI	GGTGA	2 cut(s)	230, 236
Hpy166II	GTNNAC	2 cut(s)	241, 279
Hpy188I	TCNGA	4 cut(s)	7, 99, 118, 199
Hpy188III	TCNNGA	3 cut(s)	185, 271, 449
Hpy8I	GTNNAC	2 cut(s)	241, 279
HpyAV	CCTTC	5 cut(s)	5, 254, 347, 416, 495
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	5 cut(s)	22, 27, 35, 57, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	553
HpyF3I	CTNAG	2 cut(s)	168, 388
Hsp92II	CATG	5 cut(s)	53, 215, 239, 452, 547
Kzo9I	GATC	2 cut(s)	103, 181
LpnPI	CCDG	6 cut(s)	13, 201, 267, 375, 387, 419
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	44
MaeI	CTAG	1 cut(s)	185
MalI	GATC	2 cut(s)	105, 183
MboI	GATC	2 cut(s)	103, 181
MboII	GAAGA	6 cut(s)	27, 191, 301, 328, 362, 377
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	3 cut(s)	155, 305, 571
MmeI	TCCRAC	1 cut(s)	439
Mph1103I	ATGCAT	1 cut(s)	37
MseI	TTAA	2 cut(s)	308, 492
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	1 cut(s)	406
Mva1269I	GAATGC	2 cut(s)	37, 59
MwoI	GCNNNNNNNGC	1 cut(s)	553
NdeII	GATC	2 cut(s)	103, 181
NlaIII	CATG	5 cut(s)	53, 215, 239, 452, 547
NsiI	ATGCAT	1 cut(s)	37
NspI	RCATGY	2 cut(s)	215, 547
PagI	TCATGA	1 cut(s)	448
PctI	GAATGC	2 cut(s)	37, 59
PfeI	GAWTC	2 cut(s)	119, 445
PkrI	GCNGC	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	442
PstNI	CAGNNNCTG	2 cut(s)	122, 203
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	308, 492
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	2 cut(s)	103, 181
SetI	ASST	4 cut(s)	97, 387, 427, 530
SfaNI	GCATC	1 cut(s)	44
SfcI	CTRYAG	1 cut(s)	438
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	3 cut(s)	155, 305, 571
SspMI	CTAG	1 cut(s)	185
TaaI	ACNGT	1 cut(s)	412
TasI	AATT	3 cut(s)	155, 305, 571
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	2 cut(s)	119, 445
Tru1I	TTAA	2 cut(s)	308, 492
Tru9I	TTAA	2 cut(s)	308, 492
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	5 cut(s)	24, 66, 222, 329, 437
TspRI	CASTG	1 cut(s)	64
XbaI	TCTAGA	1 cut(s)	184
XceI	RCATGY	2 cut(s)	215, 547
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XspI	CTAG	1 cut(s)	185
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.