RLG00000019532

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
53220292 .. 53221190
899 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019532

Sequence Viewer

Length: 312 bp
ATGGTGGCTTCATTTTCCCAACCAAATGTGGTTACACTGGTCAGCATCCTCCCTGCTTGTGCTAGTTTAGAATTTTTGGATTTAGGAAAACTGATTCACTGTCATGGAATTAAAGTGGGAGTTGACTCAGATATGTCATTCATGAATGCTTTGATTGCATTTTATGAGCACTATGCTTGTGTAGTTGATCTTCTTGGTCGAGCTGGTTGTTTGTTAGAAGCTTATAAGTTTATTCAGAGGATGCCGGTTGAGCCAGACATTGGTGTTTGGGGAGCTTTACTTAGTGCTTGCAGGATATACGGCAATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.21

Weight (kDa)

5.39

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
AccB7I CCANNNNNTGG 1 cut(s) 260
AcsI RAATTY 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 260
AluBI AGCT 3 cut(s) 203, 221, 275
AluI AGCT 3 cut(s) 203, 221, 275
Alw21I GWGCWC 1 cut(s) 171
ApoI RAATTY 1 cut(s) 71
BarI GAAGNNNNNNTAC 2 cut(s) 174, 206
Bbv12I GWGCWC 1 cut(s) 171
BfaI CTAG 1 cut(s) 63
BmsI GCATC 2 cut(s) 54, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 310
BseGI GGATG 2 cut(s) 45, 246
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 260
BsmI GAATGC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 140
BspHI TCATGA 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 244
BsrI ACTGG 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 244
BssMI GATC 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 127, 281
BstF5I GGATG 2 cut(s) 45, 246
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 2 cut(s) 155, 250
BtsCI GGATG 2 cut(s) 45, 246
BtsIMutI CAGTG 2 cut(s) 35, 97
Cac8I GCNNGC 1 cut(s) 289
CciI TCATGA 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 244
CviAII CATG 2 cut(s) 104, 142
CviJI RGCY 5 cut(s) 8, 203, 221, 253, 275
CviKI_1 RGCY 5 cut(s) 8, 203, 221, 253, 275
DdeI CTNAG 2 cut(s) 127, 281
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
FaeI CATG 2 cut(s) 107, 145
FaiI YATR 7 cut(s) 105, 134, 143, 165, 174, 225, 298
FatI CATG 2 cut(s) 103, 141
FokI GGATG 2 cut(s) 32, 253
FspBI CTAG 1 cut(s) 63
HapII CCGG 1 cut(s) 245
Hin1II CATG 2 cut(s) 107, 145
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 219
HinfI GANTC 2 cut(s) 94, 125
HpaII CCGG 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 130, 237
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 2 cut(s) 158, 291
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 250
HpyF3I CTNAG 2 cut(s) 127, 281
Hsp92II CATG 2 cut(s) 107, 145
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 6 cut(s) 23, 66, 189, 258, 267, 277
LweI GCATC 2 cut(s) 54, 231
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 2 cut(s) 71, 108
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 2 cut(s) 59, 231
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 102
MspI CCGG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 151
MwoI GCNNNNNNNGC 2 cut(s) 155, 250
NdeII GATC 1 cut(s) 187
NlaIII CATG 2 cut(s) 107, 145
PagI TCATGA 1 cut(s) 141
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 94
PflMI CCANNNNNTGG 1 cut(s) 260
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 1 cut(s) 111
Sau3AI GATC 1 cut(s) 187
SchI GAGTC 1 cut(s) 119
SduI GDGCHC 1 cut(s) 171
SetI ASST 3 cut(s) 205, 223, 277
SfaNI GCATC 2 cut(s) 54, 231
SmiMI CAYNNNNRTG 1 cut(s) 102
Sse9I AATT 2 cut(s) 71, 108
SspMI CTAG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 101
TaqI TCGA 1 cut(s) 199
TasI AATT 2 cut(s) 71, 108
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 2 cut(s) 42, 104
TspDTI ATGAA 2 cut(s) 130, 158
TspRI CASTG 2 cut(s) 42, 104
Van91I CCANNNNNTGG 1 cut(s) 260
XapI RAATTY 1 cut(s) 71
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.