Rh2DG390600

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000718
Physical Location & Seq
Forward (+)
56586665 .. 56590903
4239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG390600.1

Sequence Viewer

Length: 765 bp
ATGTCTGATGAAGGAAGAGTGCATTGCAGGAATGCATCCAATCCCTACCATGAATGCAGTGAGTTTTGCTTCAAAGTTATTGCTGAAACCAAAGCTCGGATGGATCAAAATCAATCAGAATCTGTACAAGTTAGTAGTGGTAGTGGCAAATCAAAATTAGAGGCTGCTCAGCAAGAGGAAGATCTAGATAGACCATCAGAGACTGATGAACATGCTGGTGATGGTGATGAGCCTCATGTTGACGAGGAGGAGAATATGGAAGGAGACTTCACGAAGTTCACAGGGAGGAAGAAAAAGTTGTGGGAATTAAGGATGAAGATGGAAAAAAGAATTGGTAAACTTCTGGATGCAAATGGTTTGGATATGAAAAGCGCTTACATGCTAGATACACAAGAGATGGCAGTGTCAAAGTACAAGAAATGGGAAAAGGATCCTGCCCCATATGGCTGGGATGGTATGCTCCAAGAGAGAGAGGAAGAAGGGAGAAAAGAAGAGGAGGGGGACGGGAAGCTCTCAGGGAAATCATCAGGCCGGGCAGTCCAACCCGAAGTTGTTGGTGGCCGTCCTGCAGGTGTGGAGTTTTCTGCAGAGATTCATGACTTTGTAGTTGAGGATAAAGCCAAGTTCTACCCTTCTGTTAAAGATGATGTATCCATTACTATAATAGAAGCAAGCTCTCATACTTTGGACATGCGACATGACTATAATGATTGGGAGCTCATATTTCCTTTAACCTTCTTTGCGGGGACAGGAAGCAGGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
SYF2

Protein Analysis

254

Amino Acids

28.73

Weight (kDa)

4.84

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 560
AciI CCGC 1 cut(s) 743
AclWI GGATC 3 cut(s) 111, 425, 438
AcoI YGGCCR 1 cut(s) 559
AfaI GTAC 2 cut(s) 126, 413
AfeI AGCGCT 1 cut(s) 373
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 1 cut(s) 73
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AluBI AGCT 4 cut(s) 95, 511, 675, 718
AluI AGCT 4 cut(s) 95, 511, 675, 718
Alw21I GWGCWC 1 cut(s) 720
Alw26I GTCTC 2 cut(s) 194, 258
AlwI GGATC 3 cut(s) 111, 425, 438
AlwNI CAGNNNCTG 2 cut(s) 122, 203
Aor51HI AGCGCT 1 cut(s) 373
AoxI GGCC 2 cut(s) 529, 559
ApeKI GCWGC 1 cut(s) 164
AspLEI GCGC 1 cut(s) 374
AsuC2I CCSGG 1 cut(s) 533
AsuHPI GGTGA 2 cut(s) 230, 236
BamHI GGATCC 1 cut(s) 430
BanII GRGCYC 1 cut(s) 720
Bbv12I GWGCWC 1 cut(s) 720
BbvI GCAGC 1 cut(s) 151
BccI CCATC 6 cut(s) 94, 202, 215, 313, 391, 446
BceAI ACGGC 1 cut(s) 546
BciVI GTATCC 1 cut(s) 661
BcnI CCSGG 1 cut(s) 533
BcoDI GTCTC 2 cut(s) 194, 258
BfaI CTAG 2 cut(s) 185, 383
BfmI CTRYAG 2 cut(s) 567, 585
BfoI RGCGCY 1 cut(s) 375
BfuAI ACCTGC 1 cut(s) 560
BfuI GTATCC 1 cut(s) 661
BglII AGATCT 1 cut(s) 181
BisI GCNGC 1 cut(s) 165
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 533
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 1 cut(s) 533
BmsI GCATC 2 cut(s) 44, 337
Bpu1102I GCTNAGC 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 108
BseGI GGATG 5 cut(s) 35, 105, 318, 352, 457
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 2 cut(s) 182, 528
BseRI GAGGAG 3 cut(s) 260, 263, 509
BseXI GCAGC 1 cut(s) 151
BseYI CCCAGC 1 cut(s) 447
BshFI GGCC 2 cut(s) 531, 561
BsiHKAI GWGCWC 1 cut(s) 720
BsiSI CCGG 1 cut(s) 532
BslFI GGGAC 2 cut(s) 515, 760
BslI CCNNNNNNNGG 1 cut(s) 96
BsmAI GTCTC 2 cut(s) 194, 258
BsmFI GGGAC 2 cut(s) 515, 760
BsmI GAATGC 2 cut(s) 37, 59
BsnI GGCC 2 cut(s) 531, 561
Bsp1286I GDGCHC 1 cut(s) 720
Bsp1407I TGTACA 1 cut(s) 124
Bsp143I GATC 3 cut(s) 103, 181, 430
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 1 cut(s) 743
BspANI GGCC 2 cut(s) 531, 561
BspCNI CTCAG 2 cut(s) 181, 527
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 1 cut(s) 432
BspMAI CTGCAG 2 cut(s) 571, 589
BspMI ACCTGC 1 cut(s) 560
BspPI GGATC 3 cut(s) 111, 425, 438
BsrDI GCAATG 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 124
BssMI GATC 3 cut(s) 103, 181, 430
Bst6I CTCTTC 2 cut(s) 10, 486
BstAUI TGTACA 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 673
BstDEI CTNAG 2 cut(s) 168, 514
BstF5I GGATG 5 cut(s) 35, 105, 318, 352, 457
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 3 cut(s) 106, 184, 433
BstMAI GTCTC 2 cut(s) 194, 258
BstMBI GATC 3 cut(s) 103, 181, 430
BstNSI RCATGY 3 cut(s) 215, 382, 694
BstSCI CCNGG 1 cut(s) 531
BstSFI CTRYAG 2 cut(s) 567, 585
BstV1I GCAGC 1 cut(s) 151
BstX2I RGATCY 2 cut(s) 181, 430
BstXI CCANNNNNNTGG 1 cut(s) 447
BstYI RGATCY 2 cut(s) 181, 430
BsuI GTATCC 1 cut(s) 661
BsuRI GGCC 2 cut(s) 531, 561
BtsCI GGATG 5 cut(s) 35, 105, 318, 352, 457
BtsI GCAGTG 2 cut(s) 64, 408
BtsIMutI CAGTG 2 cut(s) 64, 408
BveI ACCTGC 1 cut(s) 560
Cac8I GCNNGC 1 cut(s) 673
CaiI CAGNNNCTG 2 cut(s) 122, 203
CciI TCATGA 1 cut(s) 595
CfoI GCGC 1 cut(s) 374
Csp6I GTAC 2 cut(s) 125, 412
CviAII CATG 7 cut(s) 50, 212, 236, 379, 596, 691, 698
CviQI GTAC 2 cut(s) 125, 412
DdeI CTNAG 2 cut(s) 168, 514
DpnI GATC 3 cut(s) 105, 183, 432
DpnII GATC 3 cut(s) 103, 181, 430
EaeI YGGCCR 1 cut(s) 559
Eam1104I CTCTTC 2 cut(s) 10, 486
EarI CTCTTC 2 cut(s) 10, 486
Ecl136II GAGCTC 1 cut(s) 718
Eco24I GRGCYC 1 cut(s) 720
Eco47III AGCGCT 1 cut(s) 373
Eco53kI GAGCTC 1 cut(s) 718
EcoICRI GAGCTC 1 cut(s) 718
EcoT22I ATGCAT 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 720
FaeI CATG 7 cut(s) 53, 215, 239, 382, 599, 694, 701
FaqI GGGAC 2 cut(s) 515, 760
FatI CATG 7 cut(s) 49, 211, 235, 378, 595, 690, 697
FauI CCCGC 1 cut(s) 736
FauNDI CATATG 1 cut(s) 442
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 5 cut(s) 22, 112, 325, 359, 464
FriOI GRGCYC 1 cut(s) 720
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 2 cut(s) 185, 383
GlaI GCGC 1 cut(s) 373
GluI GCNGC 1 cut(s) 165
GsaI CCCAGC 1 cut(s) 451
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 2 cut(s) 531, 561
HapII CCGG 1 cut(s) 532
HhaI GCGC 1 cut(s) 374
Hin1II CATG 7 cut(s) 53, 215, 239, 382, 599, 694, 701
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 2 cut(s) 119, 592
HpaII CCGG 1 cut(s) 532
HphI GGTGA 2 cut(s) 230, 236
Hpy166II GTNNAC 3 cut(s) 241, 279, 338
Hpy188I TCNGA 4 cut(s) 7, 99, 118, 199
Hpy188III TCNNGA 4 cut(s) 185, 271, 344, 596
Hpy8I GTNNAC 3 cut(s) 241, 279, 338
HpyAV CCTTC 5 cut(s) 5, 254, 473, 642, 745
HpyCH4V TGCA 7 cut(s) 22, 27, 35, 57, 350, 569, 587
HpyF3I CTNAG 2 cut(s) 168, 514
Hsp92II CATG 7 cut(s) 53, 215, 239, 382, 599, 694, 701
HspAI GCGC 1 cut(s) 372
Kzo9I GATC 3 cut(s) 103, 181, 430
LmnI GCTCC 2 cut(s) 465, 715
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 2 cut(s) 44, 337
MaeI CTAG 2 cut(s) 185, 383
MalI GATC 3 cut(s) 105, 183, 432
MboI GATC 3 cut(s) 103, 181, 430
MboII GAAGA 6 cut(s) 27, 191, 301, 328, 488, 503
MflI RGATCY 2 cut(s) 181, 430
MhlI GDGCHC 1 cut(s) 720
MluCI AATT 3 cut(s) 155, 305, 330
MmeI TCCRAC 1 cut(s) 565
Mph1103I ATGCAT 1 cut(s) 37
MseI TTAA 3 cut(s) 308, 639, 731
MslI CAYNNNNRTG 1 cut(s) 216
MspI CCGG 1 cut(s) 532
MspR9I CCNGG 1 cut(s) 533
Mva1269I GAATGC 2 cut(s) 37, 59
NciI CCSGG 1 cut(s) 533
NdeI CATATG 1 cut(s) 442
NdeII GATC 3 cut(s) 103, 181, 430
NlaIII CATG 7 cut(s) 53, 215, 239, 382, 599, 694, 701
NlaIV GGNNCC 1 cut(s) 432
NsiI ATGCAT 1 cut(s) 37
NspI RCATGY 3 cut(s) 215, 382, 694
PagI TCATGA 1 cut(s) 595
PaqCI CACCTGC 1 cut(s) 560
PctI GAATGC 2 cut(s) 37, 59
PfeI GAWTC 2 cut(s) 119, 592
PkrI GCNGC 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 720
PspFI CCCAGC 1 cut(s) 447
PspN4I GGNNCC 1 cut(s) 432
PstI CTGCAG 2 cut(s) 571, 589
PstNI CAGNNNCTG 2 cut(s) 122, 203
PsuI RGATCY 2 cut(s) 181, 430
RsaI GTAC 2 cut(s) 126, 413
RsaNI GTAC 2 cut(s) 125, 412
RseI CAYNNNNRTG 1 cut(s) 216
SacI GAGCTC 1 cut(s) 720
SaqAI TTAA 3 cut(s) 308, 639, 731
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 3 cut(s) 103, 181, 430
SbfI CCTGCAGG 1 cut(s) 571
ScrFI CCNGG 1 cut(s) 533
SdaI CCTGCAGG 1 cut(s) 571
SduI GDGCHC 1 cut(s) 720
SetI ASST 6 cut(s) 97, 513, 574, 677, 720, 737
SfaNI GCATC 2 cut(s) 44, 337
SfcI CTRYAG 2 cut(s) 567, 585
SmiMI CAYNNNNRTG 1 cut(s) 216
Sse8387I CCTGCAGG 1 cut(s) 571
Sse9I AATT 3 cut(s) 155, 305, 330
SsiI CCGC 1 cut(s) 743
SspMI CTAG 2 cut(s) 185, 383
SstI GAGCTC 1 cut(s) 720
StyD4I CCNGG 1 cut(s) 531
TasI AATT 3 cut(s) 155, 305, 330
TatI WGTACW 2 cut(s) 124, 411
TfiI GAWTC 2 cut(s) 119, 592
Tru1I TTAA 3 cut(s) 308, 639, 731
Tru9I TTAA 3 cut(s) 308, 639, 731
TscAI CASTG 2 cut(s) 64, 408
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 6 cut(s) 24, 66, 222, 329, 380, 584
TspRI CASTG 2 cut(s) 64, 408
XbaI TCTAGA 1 cut(s) 184
XceI RCATGY 3 cut(s) 215, 382, 694
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XspI CTAG 2 cut(s) 185, 383
Zsp2I ATGCAT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.