Rh5AG358400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000718
Physical Location & Seq
Reverse (-)
59899944 .. 59917498
17555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG358400.1

Sequence Viewer

Length: 290 bp
ATGTTGGTTACACTGGTCAGCATCCTCCCTGCTTATCCTAGTCTAGAATTTTTGGATTTAGGAAAACTGATTCATTGTCATGGAGTTAAAGTTGGAGTGGACTCAGATATGTCACTCATGAATGCTTTGATTGCATTTTATGGGAAATCATCAGCCCGGGCAGTCCAACCCGAAGTTGTTGGTGGCCATCCAGCAGGTGTGGAGTTTTCGGCAGAGATTCATGACTTTGTAGTTAAGGATAAAGCCAAGTTGTACCCTTCTGTTAAAGATGGTGTATCCATTACTATAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

96

Amino Acids

10.24

Weight (kDa)

6.01

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 185
Acc36I ACCTGC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 1 cut(s) 47
AfaI GTAC 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 47
AsuC2I CCSGG 2 cut(s) 157, 158
AvaI CYCGRG 1 cut(s) 156
BalI TGGCCA 1 cut(s) 186
BccI CCATC 2 cut(s) 195, 263
BciVI GTATCC 1 cut(s) 286
BcnI CCSGG 2 cut(s) 157, 158
BfaI CTAG 2 cut(s) 39, 44
BfuAI ACCTGC 1 cut(s) 185
BfuI GTATCC 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 157, 158
BmeT110I CYCGRG 1 cut(s) 156
BmrFI CCNGG 2 cut(s) 157, 158
BmsI GCATC 1 cut(s) 30
BpuMI CCSGG 2 cut(s) 157, 158
BsaJI CCNNGG 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bse1I ACTGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 2 cut(s) 21, 187
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 18
BshFI GGCC 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 1 cut(s) 157
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 156
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 116
BspHI TCATGA 2 cut(s) 117, 220
BspMI ACCTGC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 103
BstF5I GGATG 2 cut(s) 21, 187
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 155, 156
BsuI GTATCC 1 cut(s) 286
BsuRI GGCC 1 cut(s) 186
BtsCI GGATG 2 cut(s) 21, 187
BtsIMutI CAGTG 1 cut(s) 11
BveI ACCTGC 1 cut(s) 185
CciI TCATGA 2 cut(s) 117, 220
Cfr9I CCCGGG 1 cut(s) 156
Csp6I GTAC 1 cut(s) 253
CviAII CATG 3 cut(s) 80, 118, 221
CviJI RGCY 3 cut(s) 155, 186, 245
CviKI_1 RGCY 3 cut(s) 155, 186, 245
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 156
FaeI CATG 3 cut(s) 83, 121, 224
FaiI YATR 6 cut(s) 81, 110, 119, 141, 222, 287
FatI CATG 3 cut(s) 79, 117, 220
FokI GGATG 2 cut(s) 8, 174
FspBI CTAG 2 cut(s) 39, 44
HaeIII GGCC 1 cut(s) 186
HapII CCGG 1 cut(s) 157
Hin1II CATG 3 cut(s) 83, 121, 224
HinfI GANTC 3 cut(s) 70, 101, 217
HpaII CCGG 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 3 cut(s) 44, 118, 221
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 267
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 103
Hsp92II CATG 3 cut(s) 83, 121, 224
LpnPI CCDG 4 cut(s) 42, 170, 180, 204
LweI GCATC 1 cut(s) 30
MaeI CTAG 2 cut(s) 39, 44
MaeIII GTNAC 2 cut(s) 7, 111
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 1 cut(s) 47
MluNI TGGCCA 1 cut(s) 186
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 2 cut(s) 73, 190
MnlI CCTC 1 cut(s) 35
Mox20I TGGCCA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 186
MseI TTAA 3 cut(s) 87, 234, 264
MslI CAYNNNNRTG 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 186
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 2 cut(s) 157, 158
Mva1269I GAATGC 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 131
NciI CCSGG 2 cut(s) 157, 158
NlaIII CATG 3 cut(s) 83, 121, 224
NmuCI GTSAC 1 cut(s) 111
PagI TCATGA 2 cut(s) 117, 220
PaqCI CACCTGC 1 cut(s) 185
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 2 cut(s) 70, 217
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 3 cut(s) 87, 234, 264
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 157, 158
SetI ASST 1 cut(s) 199
SfaNI GCATC 1 cut(s) 30
SmaI CCCGGG 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 78
SrfI GCCCGGGC 1 cut(s) 158
Sse9I AATT 1 cut(s) 47
SspMI CTAG 2 cut(s) 39, 44
StyD4I CCNGG 2 cut(s) 155, 156
TasI AATT 1 cut(s) 47
TfiI GAWTC 2 cut(s) 70, 217
Tru1I TTAA 3 cut(s) 87, 234, 264
Tru9I TTAA 3 cut(s) 87, 234, 264
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 111
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 3 cut(s) 62, 134, 209
TspMI CCCGGG 1 cut(s) 156
TspRI CASTG 1 cut(s) 18
XapI RAATTY 1 cut(s) 47
XbaI TCTAGA 1 cut(s) 43
XmaI CCCGGG 1 cut(s) 156
XspI CTAG 2 cut(s) 39, 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.