RLG00000022426

Protein of unknown function (DUF3754)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
83250534 .. 83256152
5619 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022426

Sequence Viewer

Length: 1695 bp
ATGAAATGCAGAGTCATGAACGCTACAAAGGCGTCCACCAGTAAGAAGCAAACAAGCGAAGAGCAACAAGCAACTGTTACAGAGTCAGACGGAGCGAGAGAAAAGAGGAGACAATTCAAGATGGGCAAGAGCAAGAAGAAAGAGATTATACGATTAGAGCGTGAATCCGTCATTGGAGTTACCAAGGCCAGACTCATCAGCACCTTGGCCGCTGAAATCGAAAACGATACTCAGGATCGGACTGAAGAACAGAGAATTCCTGATCGGGATGAGTTTTTGAAGCTATGCAAGAGGGTTGAGTACACAATTCGGGCTTGGTATCTTCTACAATTTGAGGATTTGATGCAACTCTACTCCCTCTTTGATCCTGTACATGGAGCCCAGAAGTTAGAGCAACAGAAACTTAGTGATAAAGAAATTGATGAGCTTGAACAAAATTTCCTCAAGGACTTATTTCTGGTGATGGAAAAGAGTAATTTTAAGATTGCAAGTAATGAAGAAATTGACATTGCGACTTCAGGGGAGTATCTTCTACATCTTCCCATTGTGGTTGATGAGTCTAAGCTTGACAACAAACTTTTGAAGAAATATTTTGAAAATAATCCTGCTGAAGACATTCCAGATTTTTCTGATAAGTATGTCATCTTCCGACGCGGCATTGGACTAGATAAGAAAACCGATTTCTTTATTATGGAGAAGGTGGACCTGATCATTTCACGTTTTTGGAAATATCTTTTACGAATAACTACGTTAGACAAATTTTTCAAGAAACCAGCCCCTAAGAAGAGGGATTCAGAATCTGATACAGATGAGGATGACTTCTTTGTTGAACGAATCCGTCTTGAAAACATGGAACTAAGCATTCAAAATTTAATTCTACCGAACACAATCCAGGAGCCAACTTTTGATAGGATTATCGTTGTTTACAGGCAAGCAACTACTGACGAGGATAGTCCAGAACGGGCTATACATATTAAACATTTCAAAAATATTCCAATGGCTGATTTGGAGATAGTTCTTCCTGAAAAGAAGAGCCCAGGTTTAACACCAATGGACTGGCTCTCGTTCATTGGCTCTGCTGTAGTTGGTCTGATTGCTGTTTTTACTTCAATTGAAACGACTAAACAGAACTTAGCCGATTATCAGAACTTGATAACACAGTCCATGTACGAAAAACAACTAGATAGCGGAAGGGGAACTCTTCTTCACTTGTGTGATGATGTGATTCAACAGGAAGTCAAGGAAGTAATAATTTCTTTCCTTGTGTTAAATGAAAGAGGGAATTCTACTTTACCAGATCTGGACAAGACGTGTGAGTGGATGATGAAAAATTGGTTTAACGACGAGATCAATTTTGATGTGGACGATGCAGTTAAGAAGCTAGAGAAATTGGGAATTGTTACTAAGGATAGCGAGGGACGGTATAGCTCTGTTGGGCTGAAACGTGCTAACGAGATCATTGGCACCACCACTGAGGAGGTTGTCCTTAAGGCAAAAGAAGATGCTGCTGCTGCTGCTGCTGCTAATGCTAATACTCCTGCTTCTCCTGCAGCAACGACTCCTGCAGCAACGACTCCTGCAGTCTGCGTTGACGGCAGCGGCAGTGGCAGCGACAACGCCGACGATGATAACTATGCTGCCGACACTGACGAGGATAAATATGCTGCTGACACCGATGTACTCCTAAATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

565

Amino Acids

64.15

Weight (kDa)

4.88

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3754 PF12576 302 - 372 2.1e-12 Protein of unknown function (DUF3754)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1463
AccII CGCG 1 cut(s) 654
AciI CCGC 4 cut(s) 210, 654, 1188, 1599
AclWI GGATC 2 cut(s) 243, 359
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 5 cut(s) 255, 436, 758, 868, 1282
AcuI CTGAAG 3 cut(s) 264, 501, 630
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 4 cut(s) 302, 372, 1169, 1680
AfiI CCNNNNNNNGG 1 cut(s) 374
AflII CTTAAG 1 cut(s) 1487
AflIII ACRYGT 1 cut(s) 1310
AjiI CACGTC 1 cut(s) 1311
AjnI CCWGG 2 cut(s) 891, 1036
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AleI CACNNNNGTG 1 cut(s) 1212
AloI GAACNNNNNNTCC 2 cut(s) 423, 455
AluBI AGCT 5 cut(s) 283, 427, 565, 1381, 1428
AluI AGCT 5 cut(s) 283, 427, 565, 1381, 1428
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 2 cut(s) 243, 359
AlwNI CAGNNNCTG 1 cut(s) 800
AoxI GGCC 2 cut(s) 186, 207
ApoI RAATTY 5 cut(s) 255, 436, 758, 868, 1282
Asp700I GAANNNNTTC 1 cut(s) 615
AspS9I GGNCC 1 cut(s) 703
AsuHPI GGTGA 1 cut(s) 472
AvaII GGWCC 1 cut(s) 703
BanI GGYRCC 1 cut(s) 1463
BanII GRGCYC 2 cut(s) 382, 1037
BarI GAAGNNNNNNTAC 2 cut(s) 629, 661
BbsI GAAGAC 1 cut(s) 618
BccI CCATC 2 cut(s) 115, 457
BceAI ACGGC 1 cut(s) 1609
BciT130I CCWGG 2 cut(s) 893, 1038
BclI TGATCA 1 cut(s) 708
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 3 cut(s) 665, 1181, 1382
BfmI CTRYAG 4 cut(s) 1080, 1548, 1563, 1578
BfrI CTTAAG 1 cut(s) 1487
BglII AGATCT 1 cut(s) 1297
Bme1390I CCNGG 2 cut(s) 893, 1038
Bme18I GGWCC 1 cut(s) 703
BmgBI CACGTC 1 cut(s) 1311
BmgT120I GGNCC 1 cut(s) 703
BmiI GGNNCC 3 cut(s) 379, 897, 1465
BmrFI CCNGG 2 cut(s) 893, 1038
BmsI GCATC 3 cut(s) 333, 1357, 1492
BpiI GAAGAC 1 cut(s) 618
BpuEI CTTGAG 1 cut(s) 428
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 3 cut(s) 183, 204, 1036
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse1I ACTGG 2 cut(s) 39, 1061
Bse3DI GCAATG 1 cut(s) 507
BseBI CCWGG 2 cut(s) 893, 1038
BseDI CCNNGG 3 cut(s) 183, 204, 1036
BseGI GGATG 3 cut(s) 274, 820, 1326
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 2 cut(s) 245, 1464
BseNI ACTGG 2 cut(s) 39, 1061
BseRI GAGGAG 2 cut(s) 121, 1490
Bsh1236I CGCG 1 cut(s) 654
BshFI GGCC 2 cut(s) 188, 209
BshNI GGYRCC 1 cut(s) 1463
BslFI GGGAC 1 cut(s) 1431
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 1431
BsmI GAATGC 1 cut(s) 861
BsnI GGCC 2 cut(s) 188, 209
Bsp1286I GDGCHC 2 cut(s) 382, 1037
Bsp1407I TGTACA 1 cut(s) 370
Bsp143I GATC 7 cut(s) 235, 262, 364, 708, 1297, 1347, 1455
BspACI CCGC 4 cut(s) 210, 654, 1188, 1599
BspANI GGCC 2 cut(s) 188, 209
BspCNI CTCAG 2 cut(s) 244, 1465
BspFNI CGCG 1 cut(s) 654
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 3 cut(s) 379, 897, 1465
BspMAI CTGCAG 3 cut(s) 1552, 1567, 1582
BspPI GGATC 2 cut(s) 243, 359
BspQI GCTCTTC 2 cut(s) 54, 1025
BspT107I GGYRCC 1 cut(s) 1463
BspTI CTTAAG 1 cut(s) 1487
BsrDI GCAATG 1 cut(s) 507
BsrGI TGTACA 1 cut(s) 370
BsrI ACTGG 2 cut(s) 39, 1061
BssECI CCNNGG 3 cut(s) 183, 204, 1036
BssMI GATC 7 cut(s) 235, 262, 364, 708, 1297, 1347, 1455
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 2 cut(s) 183, 204
Bst2UI CCWGG 2 cut(s) 893, 1038
Bst4CI ACNGT 3 cut(s) 76, 1161, 1422
Bst6I CTCTTC 4 cut(s) 54, 779, 1025, 1206
BstACI GRCGYC 1 cut(s) 32
BstAFI CTTAAG 1 cut(s) 1487
BstAUI TGTACA 1 cut(s) 370
BstC8I GCNNGC 1 cut(s) 933
BstDEI CTNAG 8 cut(s) 231, 404, 561, 780, 857, 1132, 1404, 1473
BstF5I GGATG 3 cut(s) 274, 820, 1326
BstFNI CGCG 1 cut(s) 654
BstKTI GATC 7 cut(s) 238, 265, 367, 711, 1300, 1350, 1458
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 7 cut(s) 235, 262, 364, 708, 1297, 1347, 1455
BstNI CCWGG 2 cut(s) 893, 1038
BstSCI CCNGG 2 cut(s) 891, 1036
BstSFI CTRYAG 4 cut(s) 1080, 1548, 1563, 1578
BstUI CGCG 1 cut(s) 654
BstV2I GAAGAC 1 cut(s) 618
BstX2I RGATCY 1 cut(s) 1297
BstXI CCANNNNNNTGG 1 cut(s) 1056
BstYI RGATCY 1 cut(s) 1297
BsuRI GGCC 2 cut(s) 188, 209
BtrI CACGTC 1 cut(s) 1311
BtsCI GGATG 3 cut(s) 274, 820, 1326
BtsI GCAGTG 1 cut(s) 1609
BtsIMutI CAGTG 3 cut(s) 1470, 1609, 1644
Cac8I GCNNGC 1 cut(s) 933
CaiI CAGNNNCTG 1 cut(s) 800
CciI TCATGA 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 703
CseI GACGC 2 cut(s) 21, 660
Csp6I GTAC 4 cut(s) 301, 371, 1168, 1679
CviAII CATG 4 cut(s) 16, 374, 850, 1165
CviQI GTAC 4 cut(s) 301, 371, 1168, 1679
DdeI CTNAG 8 cut(s) 231, 404, 561, 780, 857, 1132, 1404, 1473
DpnI GATC 7 cut(s) 237, 264, 366, 710, 1299, 1349, 1457
DpnII GATC 7 cut(s) 235, 262, 364, 708, 1297, 1347, 1455
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 4 cut(s) 54, 779, 1025, 1206
EarI CTCTTC 4 cut(s) 54, 779, 1025, 1206
Eco130I CCWWGG 2 cut(s) 183, 204
Eco24I GRGCYC 2 cut(s) 382, 1037
Eco47I GGWCC 1 cut(s) 703
Eco57I CTGAAG 3 cut(s) 264, 501, 630
EcoRI GAATTC 2 cut(s) 255, 1282
EcoRII CCWGG 2 cut(s) 891, 1036
EcoT14I CCWWGG 2 cut(s) 183, 204
EcoT38I GRGCYC 2 cut(s) 382, 1037
ErhI CCWWGG 2 cut(s) 183, 204
FaeI CATG 4 cut(s) 19, 377, 853, 1168
FaqI GGGAC 1 cut(s) 1431
FatI CATG 4 cut(s) 15, 373, 849, 1164
FbaI TGATCA 1 cut(s) 708
FokI GGATG 3 cut(s) 281, 827, 1333
FriOI GRGCYC 2 cut(s) 382, 1037
FspBI CTAG 3 cut(s) 665, 1181, 1382
HaeIII GGCC 2 cut(s) 188, 209
HgaI GACGC 2 cut(s) 21, 660
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 4 cut(s) 19, 377, 853, 1168
HincII GTYRAC 1 cut(s) 1591
HindII GTYRAC 1 cut(s) 1591
HindIII AAGCTT 1 cut(s) 563
HphI GGTGA 1 cut(s) 472
Hpy166II GTNNAC 6 cut(s) 36, 303, 703, 925, 1363, 1591
Hpy188I TCNGA 8 cut(s) 88, 240, 631, 650, 796, 802, 1092, 1146
Hpy8I GTNNAC 6 cut(s) 36, 303, 703, 925, 1363, 1591
Hpy99I CGWCG 3 cut(s) 654, 1346, 1625
HpyAV CCTTC 2 cut(s) 691, 1185
HpyCH4III ACNGT 3 cut(s) 76, 1161, 1422
HpyCH4IV ACGT 4 cut(s) 718, 749, 1310, 1444
HpyCH4V TGCA 8 cut(s) 9, 288, 346, 488, 1370, 1550, 1565, 1580
HpyF3I CTNAG 8 cut(s) 231, 404, 561, 780, 857, 1132, 1404, 1473
HpySE526I ACGT 4 cut(s) 718, 749, 1310, 1444
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 4 cut(s) 19, 377, 853, 1168
Ksp22I TGATCA 1 cut(s) 708
Kzo9I GATC 7 cut(s) 235, 262, 364, 708, 1297, 1347, 1455
LguI GCTCTTC 2 cut(s) 54, 1025
LmnI GCTCC 3 cut(s) 92, 377, 895
LweI GCATC 3 cut(s) 333, 1357, 1492
MaeI CTAG 3 cut(s) 665, 1181, 1382
MaeII ACGT 4 cut(s) 718, 749, 1310, 1444
MaeIII GTNAC 3 cut(s) 76, 178, 1399
MalI GATC 7 cut(s) 237, 264, 366, 710, 1299, 1349, 1457
MboI GATC 7 cut(s) 235, 262, 364, 708, 1297, 1347, 1455
MfeI CAATTG 1 cut(s) 1110
MflI RGATCY 1 cut(s) 1297
MhlI GDGCHC 2 cut(s) 382, 1037
MlyI GAGTC 6 cut(s) 21, 92, 186, 566, 1552, 1567
MmeI TCCRAC 1 cut(s) 673
MroXI GAANNNNTTC 1 cut(s) 615
MseI TTAA 8 cut(s) 480, 872, 975, 1043, 1268, 1338, 1374, 1488
MslI CAYNNNNRTG 1 cut(s) 1212
MspA1I CMGCKG 2 cut(s) 212, 1599
MspCI CTTAAG 1 cut(s) 1487
MspR9I CCNGG 2 cut(s) 893, 1038
MunI CAATTG 1 cut(s) 1110
Mva1269I GAATGC 1 cut(s) 861
MvaI CCWGG 2 cut(s) 893, 1038
MvnI CGCG 1 cut(s) 654
NdeII GATC 7 cut(s) 235, 262, 364, 708, 1297, 1347, 1455
NlaIII CATG 4 cut(s) 19, 377, 853, 1168
NlaIV GGNNCC 3 cut(s) 379, 897, 1465
OliI CACNNNNGTG 1 cut(s) 1212
PagI TCATGA 1 cut(s) 15
PciSI GCTCTTC 2 cut(s) 54, 1025
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PctI GAATGC 1 cut(s) 861
PdmI GAANNNNTTC 1 cut(s) 615
PfeI GAWTC 5 cut(s) 164, 791, 797, 834, 1225
PfoI TCCNGGA 1 cut(s) 891
PleI GAGTC 6 cut(s) 20, 91, 186, 565, 1552, 1567
PpsI GAGTC 6 cut(s) 20, 91, 186, 565, 1552, 1567
Psp6I CCWGG 2 cut(s) 891, 1036
PspGI CCWGG 2 cut(s) 891, 1036
PspN4I GGNNCC 3 cut(s) 379, 897, 1465
PspPI GGNCC 1 cut(s) 703
PsrI GAACNNNNNNTAC 2 cut(s) 951, 983
PstI CTGCAG 3 cut(s) 1552, 1567, 1582
PstNI CAGNNNCTG 1 cut(s) 800
PsuI RGATCY 1 cut(s) 1297
RsaI GTAC 4 cut(s) 302, 372, 1169, 1680
RsaNI GTAC 4 cut(s) 301, 371, 1168, 1679
RseI CAYNNNNRTG 1 cut(s) 1212
SapI GCTCTTC 2 cut(s) 54, 1025
SaqAI TTAA 8 cut(s) 480, 872, 975, 1043, 1268, 1338, 1374, 1488
Sau3AI GATC 7 cut(s) 235, 262, 364, 708, 1297, 1347, 1455
Sau96I GGNCC 1 cut(s) 703
SchI GAGTC 6 cut(s) 21, 92, 186, 566, 1552, 1567
ScrFI CCNGG 2 cut(s) 893, 1038
SduI GDGCHC 2 cut(s) 382, 1037
SfaNI GCATC 3 cut(s) 333, 1357, 1492
SfcI CTRYAG 4 cut(s) 1080, 1548, 1563, 1578
SinI GGWCC 1 cut(s) 703
SmiMI CAYNNNNRTG 1 cut(s) 1212
SmlI CTYRAG 2 cut(s) 443, 1487
SmoI CTYRAG 2 cut(s) 443, 1487
SsiI CCGC 4 cut(s) 210, 654, 1188, 1599
SspI AATATT 2 cut(s) 590, 991
SspMI CTAG 3 cut(s) 665, 1181, 1382
StyD4I CCNGG 2 cut(s) 891, 1036
StyI CCWWGG 2 cut(s) 183, 204
TaaI ACNGT 3 cut(s) 76, 1161, 1422
TaiI ACGT 4 cut(s) 721, 752, 1313, 1447
TaqI TCGA 1 cut(s) 219
TatI WGTACW 3 cut(s) 300, 370, 1678
TauI GCSGC 3 cut(s) 212, 657, 1602
TfiI GAWTC 5 cut(s) 164, 791, 797, 834, 1225
Tru1I TTAA 8 cut(s) 480, 872, 975, 1043, 1268, 1338, 1374, 1488
Tru9I TTAA 8 cut(s) 480, 872, 975, 1043, 1268, 1338, 1374, 1488
TscAI CASTG 3 cut(s) 1477, 1609, 1651
TspDTI ATGAA 6 cut(s) 17, 32, 510, 1057, 1287, 1340
TspGWI ACGGA 3 cut(s) 105, 157, 827
TspRI CASTG 3 cut(s) 1477, 1609, 1651
Vha464I CTTAAG 1 cut(s) 1487
VpaK11BI GGWCC 1 cut(s) 703
XapI RAATTY 5 cut(s) 255, 436, 758, 868, 1282
XmnI GAANNNNTTC 1 cut(s) 615
XspI CTAG 3 cut(s) 665, 1181, 1382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.