Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000718

Physical Location & Seq

Genomic Coordinates Reverse (-)

34040146 .. 34044945

Gene Structure 4800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG305100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGAGGGAAAGAGTCCAACGTCTGGAGTACCGAGTCCAAATGCTCTTTATTCGGACTCGACTGGATTTTTTATAGGGTCCGTTGCGTGGACCGTGACGATGGACTTGAAGGGCCAGGTGGGGTTGTTGGGTACAGAAAATTGCCCGGGCAGTCCAACCCAAAGGTTGTTGGTGGCCGTCCAGCAGGTGTGGAGTTTTCTGCAGAGATTCATGACTTTGTAGTTGAGGATAAAGCCAAGTTGTGCCCTTGTGTTAAAGATGATGTATCCATTACTATAATAGAAGCAAAGCTCTCATATTTTTGGACATGCGAAATCCTAATATTGATGACTGGATACTTGAGTGATGCAACTATGGCTGAGGATGCCTTATCTGTTTGCATGACTATAATGATTGGGAGCTCATATTTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001300 GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005975 GO:0005996 GO:0006006 GO:0006066 GO:0006067 GO:0006082 GO:0006090 GO:0006091 GO:0006113 GO:0006116 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009179 GO:0009185 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0016999 GO:0017144 GO:0019318 GO:0019362 GO:0019637 GO:0019655 GO:0019660 GO:0019666 GO:0019674 GO:0019693 GO:0019752 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032502 GO:0032787 GO:0034308 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046031 GO:0046034 GO:0046483 GO:0046496 GO:0048869 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

138

Amino Acids

15.15

Weight (kDa)

4.71

Isoelectric Point (pI)

30.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19340
fragaria_vesca	FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g54351 FvH4_6g54352
malus_domestica	MD09G1002100.v1.1 MD09G1035500.v1.1 MD17G1006300.v1.1
prunus_persica	Prupe.3G282800_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1
pyrus_communis	pycom111g02830 pycom17g00180
rosa_chinensis	RchiOBHm_Chr2g0171021 RchiOBHm_Chr2g0171051 RchiOBHm_Chr2g0176571 RchiOBHm_Chr2g0176581 RchiOBHm_Chr2g0176591 RchiOBHm_Chr4g0402101
rosa_laevigata	RLG00000019532 RLG00000021999 RLG00000022426 RLG00000022427 RLG00000030813 RLG00000034042
rosa_multiflora	Rmu_co8282945.1_g000001 Rmu_sc0001417.1_g000012 Rmu_sc0001782.1_g000018 Rmu_sc0003517.1_g000001 Rmu_sc0007623.1_g000005 Rmu_sc0035601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025090 Rroxscaffold_2G00076280 Rroxscaffold_2G00076290 Rroxscaffold_2G00080870 Rroxscaffold_2G00080890 Rroxscaffold_2G00133310 Rroxscaffold_5G00340280
rosa_rugosa	Rorug02G0552900 Rorug02G0553300 Rorug02G0596200 Rorug05G0287200
rosa_samantha	Rh2AG625400 Rh2AG626600 Rh2AG626800 Rh2AG674200 Rh2AG674300 Rh2BG636700 Rh2BG685400 Rh2CG604900 Rh2CG605700 Rh2CG648400 Rh2CG648500 Rh2CG648600 Rh2DG390600 Rh2DG648400 Rh2DG699300 Rh2DG699400 Rh2DG699500 Rh3AG109000 Rh4DG067200 Rh5AG358400 Rh6CG152900 Rh6CG159900 Rh7AG305100
rosa_wichuraiana	Rw2G029960 Rw2G051860 Rw2G051880 Rw2G055300 Rw2G055310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	176
Acc36I	ACCTGC	1 cut(s)	176
AccB7I	CCANNNNNTGG	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	175
AfaI	GTAC	2 cut(s)	31, 134
AfiI	CCNNNNNNNGG	2 cut(s)	24, 88
AgsI	TTSAA	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	2 cut(s)	292, 402
AluI	AGCT	2 cut(s)	292, 402
Alw21I	GWGCWC	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	2 cut(s)	113, 175
AspS9I	GGNCC	3 cut(s)	79, 91, 113
AsuC2I	CCSGG	2 cut(s)	147, 148
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	2 cut(s)	79, 91
BaeGI	GKGCMC	1 cut(s)	248
BaeI	ACNNNNGTAYC	2 cut(s)	328, 361
BanII	GRGCYC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	404
BbvCI	CCTCAGC	1 cut(s)	360
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	117
BciVI	GTATCC	2 cut(s)	277, 329
BcnI	CCSGG	2 cut(s)	147, 148
BfmI	CTRYAG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	176
BfuI	GTATCC	2 cut(s)	277, 329
Bme1390I	CCNGG	3 cut(s)	117, 147, 148
Bme18I	GGWCC	2 cut(s)	79, 91
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	3 cut(s)	79, 91, 113
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	3 cut(s)	117, 147, 148
BmsI	GCATC	2 cut(s)	337, 355
BpmI	CTGGAG	1 cut(s)	46
Bpu10I	CCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	361
BpuMI	CCSGG	2 cut(s)	147, 148
BsaJI	CCNNGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 88
Bse1I	ACTGG	2 cut(s)	68, 337
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	2 cut(s)	24, 88
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	68, 337
BseSI	GKGCMC	1 cut(s)	248
BshFI	GGCC	2 cut(s)	115, 177
BsiHKAI	GWGCWC	1 cut(s)	404
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	2 cut(s)	24, 88
BsnI	GGCC	2 cut(s)	115, 177
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	248, 404
BspANI	GGCC	2 cut(s)	115, 177
BspCNI	CTCAG	1 cut(s)	352
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	80
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	68, 337
BssECI	CCNNGG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	370
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 365
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	3 cut(s)	115, 145, 146
BstSFI	CTRYAG	1 cut(s)	201
BstSLI	GKGCMC	1 cut(s)	248
BsuI	GTATCC	2 cut(s)	277, 329
BsuRI	GGCC	2 cut(s)	115, 177
BtsCI	GGATG	1 cut(s)	370
BveI	ACCTGC	1 cut(s)	176
CciI	TCATGA	1 cut(s)	211
Cfr13I	GGNCC	3 cut(s)	79, 91, 113
Cfr9I	CCCGGG	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	30, 133
CviAII	CATG	3 cut(s)	212, 309, 382
CviJI	RGCY	6 cut(s)	115, 177, 236, 292, 359, 402
CviKI_1	RGCY	6 cut(s)	115, 177, 236, 292, 359, 402
CviQI	GTAC	2 cut(s)	30, 133
DdeI	CTNAG	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	404
Eco47I	GGWCC	2 cut(s)	79, 91
Eco53kI	GAGCTC	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	402
EcoRII	CCWGG	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	404
FaeI	CATG	3 cut(s)	215, 312, 385
FaiI	YATR	9 cut(s)	75, 213, 278, 298, 310, 356, 383, 389, 406
FatI	CATG	3 cut(s)	211, 308, 381
FokI	GGATG	1 cut(s)	377
FriOI	GRGCYC	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	2 cut(s)	115, 177
HapII	CCGG	1 cut(s)	147
Hin1II	CATG	3 cut(s)	215, 312, 385
HinfI	GANTC	4 cut(s)	14, 35, 57, 208
HpaII	CCGG	1 cut(s)	147
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	25, 212
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	3 cut(s)	203, 350, 381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 365
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	215, 312, 385
LmnI	GCTCC	1 cut(s)	399
LpnPI	CCDG	8 cut(s)	10, 49, 102, 129, 160, 171, 195, 318
LweI	GCATC	2 cut(s)	337, 355
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	95
MhlI	GDGCHC	2 cut(s)	248, 404
MluCI	AATT	1 cut(s)	140
MlyI	GAGTC	3 cut(s)	23, 44, 51
MmeI	TCCRAC	2 cut(s)	42, 180
MnlI	CCTC	2 cut(s)	220, 355
MseI	TTAA	2 cut(s)	255, 415
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	3 cut(s)	117, 147, 148
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	356, 365
NciI	CCSGG	2 cut(s)	147, 148
NlaIII	CATG	3 cut(s)	215, 312, 385
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	95
NspI	RCATGY	1 cut(s)	312
PagI	TCATGA	1 cut(s)	211
PaqCI	CACCTGC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	208
PflMI	CCANNNNNTGG	1 cut(s)	24
PleI	GAGTC	3 cut(s)	22, 43, 51
PpsI	GAGTC	3 cut(s)	22, 43, 51
Psp124BI	GAGCTC	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	3 cut(s)	79, 91, 113
PstI	CTGCAG	1 cut(s)	205
RsaI	GTAC	2 cut(s)	31, 134
RsaNI	GTAC	2 cut(s)	30, 133
SacI	GAGCTC	1 cut(s)	404
SaqAI	TTAA	2 cut(s)	255, 415
Sau96I	GGNCC	3 cut(s)	79, 91, 113
SchI	GAGTC	3 cut(s)	23, 44, 51
ScrFI	CCNGG	3 cut(s)	117, 147, 148
SduI	GDGCHC	2 cut(s)	248, 404
SetI	ASST	6 cut(s)	24, 121, 168, 190, 294, 404
SfaNI	GCATC	2 cut(s)	337, 355
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	2 cut(s)	79, 91
SmaI	CCCGGG	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
SrfI	GCCCGGGC	1 cut(s)	148
Sse9I	AATT	1 cut(s)	140
SspI	AATATT	1 cut(s)	324
SstI	GAGCTC	1 cut(s)	404
StyD4I	CCNGG	3 cut(s)	115, 145, 146
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	255, 415
Tru9I	TTAA	2 cut(s)	255, 415
TseFI	GTSAC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	1 cut(s)	200
TspGWI	ACGGA	1 cut(s)	71
TspMI	CCCGGG	1 cut(s)	146
Van91I	CCANNNNNTGG	1 cut(s)	24
VpaK11BI	GGWCC	2 cut(s)	79, 91
XceI	RCATGY	1 cut(s)	312
XmaI	CCCGGG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.