Rh2AG626600

Protein of unknown function (DUF3754)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000718
Physical Location & Seq
Reverse (-)
85113031 .. 85113731
701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG626600.1

Sequence Viewer

Length: 255 bp
ATGGAACAGGGAAAAGCTACAAGAGAAGATCTGGATAGGTGGTGTGAGGAACTCATTAAAGAAGAGTTTGGTGCCAGTTGTAATTTTGATGTGGATGATGCAGTTGGGAAGTTGGAGAAATTGGGAATTGTCTCTCGGGATTCCGTTGGACGGTATTTCTGCATTGGGCTGAAACGTGCGAATGAAATAATTGGGACCACCACTGAGGAGCTTGTTATGAGGGCAAAACAAGGCACACAAGGCAGTAGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3754

Protein Analysis

84

Amino Acids

9.32

Weight (kDa)

4.81

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 150
AluBI AGCT 2 cut(s) 17, 211
AluI AGCT 2 cut(s) 17, 211
Alw26I GTCTC 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 195
AvaI CYCGRG 1 cut(s) 135
AvaII GGWCC 1 cut(s) 195
BanI GGYRCC 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 136
BglII AGATCT 1 cut(s) 28
Bme18I GGWCC 1 cut(s) 195
BmeT110I CYCGRG 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 2 cut(s) 73, 196
BmsI GCATC 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 221
BshNI GGYRCC 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 208
BsoBI CYCGRG 1 cut(s) 135
Bsp143I GATC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 73, 196
BspT107I GGYRCC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 75
BssMI GATC 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 153
Bst6I CTCTTC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 195
CviJI RGCY 3 cut(s) 17, 169, 211
CviKI_1 RGCY 3 cut(s) 17, 169, 211
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 135
FaiI YATR 1 cut(s) 218
FaqI GGGAC 1 cut(s) 208
FokI GGATG 1 cut(s) 107
HinfI GANTC 1 cut(s) 140
Hpy188III TCNNGA 3 cut(s) 32, 137, 252
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 2 cut(s) 101, 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 175
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 2 cut(s) 17, 88
LweI GCATC 1 cut(s) 88
MaeII ACGT 1 cut(s) 175
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 2 cut(s) 38, 74
MflI RGATCY 1 cut(s) 28
MluCI AATT 4 cut(s) 82, 119, 126, 189
MmeI TCCRAC 2 cut(s) 93, 127
MnlI CCTC 3 cut(s) 40, 199, 213
MseI TTAA 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 240
NdeII GATC 1 cut(s) 28
NlaIV GGNNCC 2 cut(s) 73, 196
PfeI GAWTC 1 cut(s) 140
PspN4I GGNNCC 2 cut(s) 73, 196
PspPI GGNCC 1 cut(s) 195
PsuI RGATCY 1 cut(s) 28
SaqAI TTAA 1 cut(s) 57
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 1 cut(s) 195
SetI ASST 4 cut(s) 19, 41, 178, 213
SfaNI GCATC 1 cut(s) 88
SinI GGWCC 1 cut(s) 195
Sse9I AATT 4 cut(s) 82, 119, 126, 189
TaaI ACNGT 1 cut(s) 153
TaiI ACGT 1 cut(s) 178
TasI AATT 4 cut(s) 82, 119, 126, 189
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 198
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.